RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 USP17L18D6R9N7 530 aa21.25■□□□□ 0.99
CLN3-206ENST00000360019 USP17L22D6RA61 530 aa21.25■□□□□ 0.99
CLN3-206ENST00000360019 USP17L17D6RBQ6 530 aa21.25■□□□□ 0.99
CLN3-206ENST00000360019 USP17L19D6RCP7 530 aa21.25■□□□□ 0.99
CLN3-206ENST00000360019 USP17L20D6RJB6 530 aa21.25■□□□□ 0.99
CLN3-206ENST00000360019 MEIS2O14770 477 aa21.25■□□□□ 0.99
CLN3-206ENST00000360019 USP17L24Q0WX57 530 aa21.25■□□□□ 0.99
CLN3-206ENST00000360019 PPIL2Q13356 520 aa21.25■□□□□ 0.99
CLN3-206ENST00000360019 CAVIN1Q6NZI2 390 aaKnown RBP21.25■□□□□ 0.99
CLN3-206ENST00000360019 USP17L6PQ6QN14 398 aa21.25■□□□□ 0.99
CLN3-206ENST00000360019 OPTNQ96CV9 577 aa21.25■□□□□ 0.99
CLN3-206ENST00000360019 GZF1Q9H116 711 aaPredicted RBP21.25■□□□□ 0.99
CLN3-206ENST00000360019 GLT8D2Q9H1C3 349 aa21.25■□□□□ 0.99
CLN3-206ENST00000360019 A0A0G2JLL6 359 aaPredicted RBP21.25■□□□□ 0.99
CLN3-206ENST00000360019 ICAM1P05362 532 aa21.25■□□□□ 0.99
CLN3-206ENST00000360019 TRAF1Q13077 416 aa21.25■□□□□ 0.99
CLN3-206ENST00000360019 ZNF174Q15697 407 aa21.25■□□□□ 0.99
CLN3-206ENST00000360019 AXDND1Q5T1B0 1012 aaPredicted RBP21.25■□□□□ 0.99
CLN3-206ENST00000360019 ADALQ6DHV7 355 aa21.25■□□□□ 0.99
CLN3-206ENST00000360019 CATSPERGQ6ZRH7 1159 aa21.25■□□□□ 0.99
CLN3-206ENST00000360019 PRRT2Q7Z6L0 340 aaPredicted RBP21.25■□□□□ 0.99
CLN3-206ENST00000360019 ATG4CQ96DT6 458 aa21.25■□□□□ 0.99
CLN3-206ENST00000360019 WNK4Q96J92 1243 aa21.25■□□□□ 0.99
CLN3-206ENST00000360019 CEP131Q9UPN4 1083 aa21.25■□□□□ 0.99
CLN3-206ENST00000360019 KCNH4Q9UQ05 1017 aa21.25■□□□□ 0.99
CLN3-206ENST00000360019 CXCL11O14625 94 aa21.24■□□□□ 0.99
CLN3-206ENST00000360019 LIG1P18858 919 aa21.24■□□□□ 0.99
CLN3-206ENST00000360019 TREML2Q5T2D2 321 aa21.24■□□□□ 0.99
CLN3-206ENST00000360019 TBCKQ8TEA7 893 aa21.24■□□□□ 0.99
CLN3-206ENST00000360019 AGBL1Q96MI9 1066 aa21.24■□□□□ 0.99
CLN3-206ENST00000360019 P2RX7Q99572 595 aaKnown RBP21.24■□□□□ 0.99
CLN3-206ENST00000360019 TMEM63CQ9P1W3 806 aa21.24■□□□□ 0.99
CLN3-206ENST00000360019 MRVI1Q9Y6F6 885 aa21.24■□□□□ 0.99
CLN3-206ENST00000360019 LOC285556D6RIA3 1793 aa21.23■□□□□ 0.99
CLN3-206ENST00000360019 VWA5AO00534 786 aa21.23■□□□□ 0.99
CLN3-206ENST00000360019 GJA5P36382 358 aa21.23■□□□□ 0.99
CLN3-206ENST00000360019 FKBP1BP68106 108 aa21.23■□□□□ 0.99
CLN3-206ENST00000360019 JMYQ8N9B5 988 aa21.23■□□□□ 0.99
CLN3-206ENST00000360019 GBA2Q9HCG7 927 aaPredicted RBP21.23■□□□□ 0.99
CLN3-206ENST00000360019 MORC2Q9Y6X9 1032 aaPredicted RBP21.23■□□□□ 0.99
CLN3-206ENST00000360019 UNCXA6NJT0 531 aa21.22■□□□□ 0.99
CLN3-206ENST00000360019 CELF2O95319 508 aaKnown RBP21.22■□□□□ 0.99
CLN3-206ENST00000360019 ITGBL1O95965 494 aaPredicted RBP21.22■□□□□ 0.99
CLN3-206ENST00000360019 DSG3P32926 999 aa21.22■□□□□ 0.99
CLN3-206ENST00000360019 MCM7P33993 719 aa21.22■□□□□ 0.99
CLN3-206ENST00000360019 RAVER2Q9HCJ3 691 aaKnown RBP21.22■□□□□ 0.99
CLN3-206ENST00000360019 FBXO2Q9UK22 296 aaPredicted RBP21.22■□□□□ 0.99
CLN3-206ENST00000360019 CCPG1Q9ULG6 757 aa21.22■□□□□ 0.99
CLN3-206ENST00000360019 ADAMTS5Q9UNA0 930 aa21.22■□□□□ 0.99
CLN3-206ENST00000360019 EDIL3O43854 480 aa21.22■□□□□ 0.99
CLN3-206ENST00000360019 COG2Q14746 738 aa21.22■□□□□ 0.99
CLN3-206ENST00000360019 CHADLQ6NUI6 762 aa21.22■□□□□ 0.99
CLN3-206ENST00000360019 NEK8Q86SG6 692 aa21.22■□□□□ 0.99
CLN3-206ENST00000360019 REPS2Q8NFH8 660 aa21.22■□□□□ 0.99
CLN3-206ENST00000360019 CLIC6Q96NY7 704 aa21.22■□□□□ 0.99
CLN3-206ENST00000360019 GOLPH3LQ9H4A5 285 aa21.22■□□□□ 0.99
CLN3-206ENST00000360019 ABCB11O95342 1321 aa21.22■□□□□ 0.99
CLN3-206ENST00000360019 A0A1W2PQ27 194 aa21.21■□□□□ 0.99
CLN3-206ENST00000360019 A0A1W2PQ64 194 aa21.21■□□□□ 0.99
CLN3-206ENST00000360019 A0A1W2PQD8 194 aa21.21■□□□□ 0.99
CLN3-206ENST00000360019 ZBED4O75132 1171 aa21.21■□□□□ 0.99
CLN3-206ENST00000360019 BMP15O95972 392 aa21.21■□□□□ 0.99
CLN3-206ENST00000360019 FDX1P10109 184 aa21.21■□□□□ 0.99
CLN3-206ENST00000360019 PTPREP23469 700 aa21.21■□□□□ 0.99
CLN3-206ENST00000360019 ATP2C1P98194 919 aaPredicted RBP21.21■□□□□ 0.99
CLN3-206ENST00000360019 PTGDRQ13258 359 aa21.21■□□□□ 0.99
CLN3-206ENST00000360019 CCAR1Q8IX12 1150 aaKnown RBP21.21■□□□□ 0.99
CLN3-206ENST00000360019 CPXCR1Q8N123 301 aa21.21■□□□□ 0.99
CLN3-206ENST00000360019 KRI1Q8N9T8 703 aaKnown RBP21.21■□□□□ 0.99
CLN3-206ENST00000360019 PROCA1Q8NCQ7 364 aaPredicted RBP21.21■□□□□ 0.99
CLN3-206ENST00000360019 SLC10A4Q96EP9 437 aa21.21■□□□□ 0.99
CLN3-206ENST00000360019 MRPL11Q9Y3B7 192 aaKnown RBP21.21■□□□□ 0.99
CLN3-206ENST00000360019 SPDYE16A6NNV3 312 aaPredicted RBP21.2■□□□□ 0.98
CLN3-206ENST00000360019 PIK3CDO00329 1044 aa21.2■□□□□ 0.98
CLN3-206ENST00000360019 GRIN1Q05586 938 aa21.2■□□□□ 0.98
CLN3-206ENST00000360019 MOGSQ13724 837 aa21.2■□□□□ 0.98
CLN3-206ENST00000360019 LETM2Q2VYF4 491 aa21.2■□□□□ 0.98
CLN3-206ENST00000360019 GADL1Q6ZQY3 521 aa21.2■□□□□ 0.98
CLN3-206ENST00000360019 C4orf32Q8N8J7 132 aa21.2■□□□□ 0.98
CLN3-206ENST00000360019 TBC1D5Q92609 795 aa21.2■□□□□ 0.98
CLN3-206ENST00000360019 MYPNQ86TC9 1320 aa21.2■□□□□ 0.98
CLN3-206ENST00000360019 HOXA13P31271 388 aaPredicted RBP21.2■□□□□ 0.98
CLN3-206ENST00000360019 AP3B2Q13367 1082 aa21.2■□□□□ 0.98
CLN3-206ENST00000360019 CST9Q5W186 159 aa21.2■□□□□ 0.98
CLN3-206ENST00000360019 FSIP1Q8NA03 581 aa21.2■□□□□ 0.98
CLN3-206ENST00000360019 ANO3Q9BYT9 981 aa21.2■□□□□ 0.98
CLN3-206ENST00000360019 SRPRBQ9Y5M8 271 aaKnown RBP21.2■□□□□ 0.98
CLN3-206ENST00000360019 CUTAO60888 179 aa21.19■□□□□ 0.98
CLN3-206ENST00000360019 NR1I2O75469 434 aa21.19■□□□□ 0.98
CLN3-206ENST00000360019 SHC4Q6S5L8 630 aa21.19■□□□□ 0.98
CLN3-206ENST00000360019 C2orf69Q8N8R5 385 aa21.19■□□□□ 0.98
CLN3-206ENST00000360019 CLEC4DQ8WXI8 215 aa21.19■□□□□ 0.98
CLN3-206ENST00000360019 MRPS27Q92552 414 aaKnown RBP21.19■□□□□ 0.98
CLN3-206ENST00000360019 COL11A1P12107 1806 aaPredicted RBP21.19■□□□□ 0.98
CLN3-206ENST00000360019 CCNT1O60563 726 aaKnown RBP21.18■□□□□ 0.98
CLN3-206ENST00000360019 CFBP00751 764 aa21.18■□□□□ 0.98
CLN3-206ENST00000360019 HOXA7P31268 230 aaPredicted RBP21.18■□□□□ 0.98
CLN3-206ENST00000360019 HOXC10Q9NYD6 342 aa21.18■□□□□ 0.98
CLN3-206ENST00000360019 DACT1Q9NYF0 836 aa21.18■□□□□ 0.98
CLN3-206ENST00000360019 ZNF214Q9UL59 606 aaPredicted RBP21.18■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms