RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 ELP3Q9H9T3 547 aa21.31■■□□□ 1
CLN3-204ENST00000357857 MYH7BA7E2Y1 1941 aa21.31■■□□□ 1
CLN3-204ENST00000357857 RLFQ13129 1914 aa21.31■■□□□ 1
CLN3-204ENST00000357857 MCM7P33993 719 aa21.3■■□□□ 1
CLN3-204ENST00000357857 SH3D19Q5HYK7 790 aa21.3■■□□□ 1
CLN3-204ENST00000357857 GOLPH3LQ9H4A5 285 aa21.3■■□□□ 1
CLN3-204ENST00000357857 FBXO2Q9UK22 296 aaPredicted RBP21.3■■□□□ 1
CLN3-204ENST00000357857 PPP1R9AQ9ULJ8 1098 aa21.3■■□□□ 1
CLN3-204ENST00000357857 TAL1P17542 331 aaPredicted RBP21.29■■□□□ 1
CLN3-204ENST00000357857 PTPREP23469 700 aa21.29■■□□□ 1
CLN3-204ENST00000357857 GSE1Q14687 1217 aa21.29■■□□□ 1
CLN3-204ENST00000357857 NEK8Q86SG6 692 aa21.29■■□□□ 1
CLN3-204ENST00000357857 LDHDQ86WU2 507 aa21.29■■□□□ 1
CLN3-204ENST00000357857 ERO1BQ86YB8 467 aa21.29■■□□□ 1
CLN3-204ENST00000357857 TBCKQ8TEA7 893 aa21.29■■□□□ 1
CLN3-204ENST00000357857 CLMNQ96JQ2 1002 aa21.29■■□□□ 1
CLN3-204ENST00000357857 DDX19AQ9NUU7 478 aaKnown RBP21.29■■□□□ 1
CLN3-204ENST00000357857 DACT1Q9NYF0 836 aa21.29■■□□□ 1
CLN3-204ENST00000357857 LOC285556D6RIA3 1793 aa21.29■■□□□ 1
CLN3-204ENST00000357857 NR1I2O75469 434 aa21.29■■□□□ 1
CLN3-204ENST00000357857 CMA1P23946 247 aa21.29■■□□□ 1
CLN3-204ENST00000357857 ATP2C1P98194 919 aaPredicted RBP21.29■■□□□ 1
CLN3-204ENST00000357857 PPATQ06203 517 aa21.29■■□□□ 1
CLN3-204ENST00000357857 PTGDRQ13258 359 aa21.29■■□□□ 1
CLN3-204ENST00000357857 CNKSR2Q8WXI2 1034 aa21.29■■□□□ 1
CLN3-204ENST00000357857 CLIC6Q96NY7 704 aa21.29■■□□□ 1
CLN3-204ENST00000357857 SRPRBQ9Y5M8 271 aaKnown RBP21.29■■□□□ 1
CLN3-204ENST00000357857 COL11A1P12107 1806 aaPredicted RBP21.29■■□□□ 1
CLN3-204ENST00000357857 ABCB11O95342 1321 aa21.28■■□□□ 1
CLN3-204ENST00000357857 USP17L15C9J2P7 530 aa21.28■■□□□ 1
CLN3-204ENST00000357857 USP17L13C9JLJ4 530 aa21.28■■□□□ 1
CLN3-204ENST00000357857 USP17L11C9JVI0 530 aa21.28■■□□□ 1
CLN3-204ENST00000357857 USP17L18D6R9N7 530 aa21.28■■□□□ 1
CLN3-204ENST00000357857 USP17L22D6RA61 530 aa21.28■■□□□ 1
CLN3-204ENST00000357857 USP17L17D6RBQ6 530 aa21.28■■□□□ 1
CLN3-204ENST00000357857 USP17L19D6RCP7 530 aa21.28■■□□□ 1
CLN3-204ENST00000357857 USP17L20D6RJB6 530 aa21.28■■□□□ 1
CLN3-204ENST00000357857 TRAF5O00463 557 aa21.28■■□□□ 1
CLN3-204ENST00000357857 USP17L24Q0WX57 530 aa21.28■■□□□ 1
CLN3-204ENST00000357857 USP17L6PQ6QN14 398 aa21.28■■□□□ 1
CLN3-204ENST00000357857 MRPL11Q9Y3B7 192 aaKnown RBP21.28■■□□□ 1
CLN3-204ENST00000357857 MRVI1Q9Y6F6 885 aa21.28■■□□□ 1
CLN3-204ENST00000357857 SPDYE5A6NIY4 337 aa21.27■■□□□ 1
CLN3-204ENST00000357857 MEIS2O14770 477 aa21.27■■□□□ 1
CLN3-204ENST00000357857 ICAM1P05362 532 aa21.27■■□□□ 1
CLN3-204ENST00000357857 FDX1P10109 184 aa21.27■■□□□ 1
CLN3-204ENST00000357857 FAM160A1Q05DH4 1040 aa21.27■■□□□ 1
CLN3-204ENST00000357857 MCTP2Q6DN12 878 aa21.27■■□□□ 1
CLN3-204ENST00000357857 TEX2Q8IWB9 1127 aa21.27■■□□□ 1
CLN3-204ENST00000357857 FERMT2Q96AC1 680 aa21.27■■□□□ 1
CLN3-204ENST00000357857 SLC38A10Q9HBR0 1119 aa21.27■■□□□ 1
CLN3-204ENST00000357857 ZNF536O15090 1300 aa21.27■□□□□ 0.99
CLN3-204ENST00000357857 A0A1B0GVL5 298 aa21.26■□□□□ 0.99
CLN3-204ENST00000357857 OPLAHO14841 1288 aa21.26■□□□□ 0.99
CLN3-204ENST00000357857 AP3B2Q13367 1082 aa21.26■□□□□ 0.99
CLN3-204ENST00000357857 LETM2Q2VYF4 491 aa21.26■□□□□ 0.99
CLN3-204ENST00000357857 RESP18Q5W5W9 173 aa21.26■□□□□ 0.99
CLN3-204ENST00000357857 SHC4Q6S5L8 630 aa21.26■□□□□ 0.99
CLN3-204ENST00000357857 ENGASEQ8NFI3 743 aa21.26■□□□□ 0.99
CLN3-204ENST00000357857 OTUD5Q96G74 571 aa21.26■□□□□ 0.99
CLN3-204ENST00000357857 ZNF408Q9H9D4 720 aa21.26■□□□□ 0.99
CLN3-204ENST00000357857 CCPG1Q9ULG6 757 aa21.26■□□□□ 0.99
CLN3-204ENST00000357857 CTDP1Q9Y5B0 961 aaPredicted RBP21.26■□□□□ 0.99
CLN3-204ENST00000357857 ZBED4O75132 1171 aa21.26■□□□□ 0.99
CLN3-204ENST00000357857 YY1P25490 414 aa21.26■□□□□ 0.99
CLN3-204ENST00000357857 ZNF445P59923 1031 aa21.26■□□□□ 0.99
CLN3-204ENST00000357857 ORC2Q13416 577 aaPredicted RBP21.26■□□□□ 0.99
CLN3-204ENST00000357857 LDLRAD1Q5T700 205 aa21.26■□□□□ 0.99
CLN3-204ENST00000357857 CATSPERGQ6ZRH7 1159 aa21.26■□□□□ 0.99
CLN3-204ENST00000357857 ZNF579Q8NAF0 562 aaKnown RBP21.26■□□□□ 0.99
CLN3-204ENST00000357857 NUP62CLQ9H1M0 184 aa21.26■□□□□ 0.99
CLN3-204ENST00000357857 NMRK2Q9NPI5 230 aa21.26■□□□□ 0.99
CLN3-204ENST00000357857 RBBP6Q7Z6E9 1792 aaKnown RBP21.25■□□□□ 0.99
CLN3-204ENST00000357857 SYCE3A1L190 88 aa21.25■□□□□ 0.99
CLN3-204ENST00000357857 CCNT1O60563 726 aaKnown RBP21.25■□□□□ 0.99
CLN3-204ENST00000357857 LETM1O95202 739 aaPredicted RBP21.25■□□□□ 0.99
CLN3-204ENST00000357857 NDUFA8P51970 172 aa21.25■□□□□ 0.99
CLN3-204ENST00000357857 GRIN1Q05586 938 aa21.25■□□□□ 0.99
CLN3-204ENST00000357857 FMR1Q06787 632 aaKnown RBP eCLIP21.25■□□□□ 0.99
CLN3-204ENST00000357857 PPIL2Q13356 520 aa21.25■□□□□ 0.99
CLN3-204ENST00000357857 SNW1Q13573 536 aaKnown RBP21.25■□□□□ 0.99
CLN3-204ENST00000357857 C4orf32Q8N8J7 132 aa21.25■□□□□ 0.99
CLN3-204ENST00000357857 ATG4CQ96DT6 458 aa21.25■□□□□ 0.99
CLN3-204ENST00000357857 AGBL1Q96MI9 1066 aa21.25■□□□□ 0.99
CLN3-204ENST00000357857 ANO3Q9BYT9 981 aa21.25■□□□□ 0.99
CLN3-204ENST00000357857 PNMA2Q9UL42 364 aa21.25■□□□□ 0.99
CLN3-204ENST00000357857 PIK3CDO00329 1044 aa21.24■□□□□ 0.99
CLN3-204ENST00000357857 CXCL11O14625 94 aa21.24■□□□□ 0.99
CLN3-204ENST00000357857 IRF6O14896 467 aa21.24■□□□□ 0.99
CLN3-204ENST00000357857 FOSP01100 380 aaPredicted RBP21.24■□□□□ 0.99
CLN3-204ENST00000357857 PFKFB1P16118 471 aa21.24■□□□□ 0.99
CLN3-204ENST00000357857 DSG3P32926 999 aa21.24■□□□□ 0.99
CLN3-204ENST00000357857 COG2Q14746 738 aa21.24■□□□□ 0.99
CLN3-204ENST00000357857 ARL6IP4Q66PJ3 421 aaKnown RBP21.24■□□□□ 0.99
CLN3-204ENST00000357857 FMR1NBQ8N0W7 255 aaPredicted RBP21.24■□□□□ 0.99
CLN3-204ENST00000357857 CLSTN2Q9H4D0 955 aa21.24■□□□□ 0.99
CLN3-204ENST00000357857 A0A0G2JLL6 359 aaPredicted RBP21.24■□□□□ 0.99
CLN3-204ENST00000357857 FAM237AA0A1B0GTK4 181 aa21.24■□□□□ 0.99
CLN3-204ENST00000357857 LAD1O00515 517 aa21.24■□□□□ 0.99
CLN3-204ENST00000357857 VWA5AO00534 786 aa21.24■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms