RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 CFAP74Q9C0B2 1584 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 FAM25EA8MYX2 175 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 AKR1B15C9JRZ8 316 aaPredicted RBP4.56□□□□□ -1.68
NEDD4-201ENST00000338963 SART1O43290 800 aaKnown RBP4.56□□□□□ -1.68
NEDD4-201ENST00000338963 NQO1P15559 274 aaKnown RBP4.56□□□□□ -1.68
NEDD4-201ENST00000338963 RNASELQ05823 741 aaKnown RBP4.56□□□□□ -1.68
NEDD4-201ENST00000338963 PDCLQ13371 301 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 PPP1R42Q7Z4L9 355 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 TAF1DQ9H5J8 278 aaPredicted RBP4.56□□□□□ -1.68
NEDD4-201ENST00000338963 STIM2Q9P246 746 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 BIN2Q9UBW5 565 aaPredicted RBP4.56□□□□□ -1.68
NEDD4-201ENST00000338963 IFIT3O14879 490 aaKnown RBP4.56□□□□□ -1.68
NEDD4-201ENST00000338963 ATP9BO43861 1147 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 CLASP2O75122 1294 aaKnown RBP4.56□□□□□ -1.68
NEDD4-201ENST00000338963 ESRRBO95718 433 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 PORP16435 677 aaPredicted RBP4.56□□□□□ -1.68
NEDD4-201ENST00000338963 GSTT1P30711 240 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 DMPKQ09013 629 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 NMIQ13287 307 aaPredicted RBP4.56□□□□□ -1.68
NEDD4-201ENST00000338963 C6orf163Q5TEZ5 329 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 MREGQ8N565 214 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 DEPTORQ8TB45 409 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 CENPTQ96BT3 561 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 PNKPQ96T60 521 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 HAUS8Q9BT25 410 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 TRIM55Q9BYV6 548 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 PUS3Q9BZE2 481 aaKnown RBP4.56□□□□□ -1.68
NEDD4-201ENST00000338963 PIH1D3Q9NQM4 214 aaKnown RBP4.56□□□□□ -1.68
NEDD4-201ENST00000338963 FAM114A2Q9NRY5 505 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 FAF1Q9UNN5 650 aaPredicted RBP4.56□□□□□ -1.68
NEDD4-201ENST00000338963 NR2E3Q9Y5X4 410 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 NDC80O14777 642 aa4.55□□□□□ -1.68
NEDD4-201ENST00000338963 STRNO43815 780 aa4.55□□□□□ -1.68
NEDD4-201ENST00000338963 MYZAPP0CAP1 466 aa4.55□□□□□ -1.68
NEDD4-201ENST00000338963 SDSP20132 328 aa4.55□□□□□ -1.68
NEDD4-201ENST00000338963 SP100P23497 879 aaPredicted RBP4.55□□□□□ -1.68
NEDD4-201ENST00000338963 DR1Q01658 176 aa4.55□□□□□ -1.68
NEDD4-201ENST00000338963 ITGA7Q13683 1181 aa4.55□□□□□ -1.68
NEDD4-201ENST00000338963 BTG3Q14201 252 aaPredicted RBP4.55□□□□□ -1.68
NEDD4-201ENST00000338963 ANKRD20A2Q5SQ80 823 aa4.55□□□□□ -1.68
NEDD4-201ENST00000338963 ANKRD20A1Q5TYW2 823 aa4.55□□□□□ -1.68
NEDD4-201ENST00000338963 ANKRD20A3Q5VUR7 823 aa4.55□□□□□ -1.68
NEDD4-201ENST00000338963 SLC4A10Q6U841 1118 aa4.55□□□□□ -1.68
NEDD4-201ENST00000338963 TTC6Q86TZ1 520 aa4.55□□□□□ -1.68
NEDD4-201ENST00000338963 KLHDC4Q8TBB5 520 aa4.55□□□□□ -1.68
NEDD4-201ENST00000338963 RBM46Q8TBY0 533 aaKnown RBP4.55□□□□□ -1.68
NEDD4-201ENST00000338963 CCDC42Q96M95 316 aa4.55□□□□□ -1.68
NEDD4-201ENST00000338963 ANKRD2Q9GZV1 360 aa4.55□□□□□ -1.68
NEDD4-201ENST00000338963 TSPYL2Q9H2G4 693 aaPredicted RBP4.55□□□□□ -1.68
NEDD4-201ENST00000338963 ARIH1Q9Y4X5 557 aaPredicted RBP4.55□□□□□ -1.68
NEDD4-201ENST00000338963 GMNNO75496 209 aa4.55□□□□□ -1.68
NEDD4-201ENST00000338963 PDE5AO76074 875 aa4.55□□□□□ -1.68
NEDD4-201ENST00000338963 KRT6AP02538 564 aa4.55□□□□□ -1.68
NEDD4-201ENST00000338963 KRT6BP04259 564 aa4.55□□□□□ -1.68
NEDD4-201ENST00000338963 RPL26P61254 145 aaKnown RBP4.55□□□□□ -1.68
NEDD4-201ENST00000338963 PACS1Q6VY07 963 aa4.55□□□□□ -1.68
NEDD4-201ENST00000338963 AENQ8WTP8 325 aaKnown RBP4.55□□□□□ -1.68
NEDD4-201ENST00000338963 NDST4Q9H3R1 872 aa4.55□□□□□ -1.68
NEDD4-201ENST00000338963 A0A1B0GVL5 298 aa4.55□□□□□ -1.68
NEDD4-201ENST00000338963 SYCE1LA8MT33 242 aa4.55□□□□□ -1.68
NEDD4-201ENST00000338963 LCA5LO95447 670 aa4.55□□□□□ -1.68
NEDD4-201ENST00000338963 SLC3A2P08195 630 aaKnown RBP4.55□□□□□ -1.68
NEDD4-201ENST00000338963 ODF2Q5BJF6 829 aa4.55□□□□□ -1.68
NEDD4-201ENST00000338963 PDXDC1Q6P996 788 aa4.55□□□□□ -1.68
NEDD4-201ENST00000338963 CLEC4GQ6UXB4 293 aa4.55□□□□□ -1.68
NEDD4-201ENST00000338963 Q6ZUG5 572 aa4.55□□□□□ -1.68
NEDD4-201ENST00000338963 ARHGAP24Q8N264 748 aa4.55□□□□□ -1.68
NEDD4-201ENST00000338963 UNKQ9C0B0 810 aaKnown RBP4.55□□□□□ -1.68
NEDD4-201ENST00000338963 RHBDL2Q9NX52 303 aa4.55□□□□□ -1.68
NEDD4-201ENST00000338963 PLA2R1Q13018 1463 aa4.55□□□□□ -1.68
NEDD4-201ENST00000338963 CFAP43Q8NDM7 1665 aa4.55□□□□□ -1.68
NEDD4-201ENST00000338963 ASAP2O43150 1006 aa4.55□□□□□ -1.68
NEDD4-201ENST00000338963 SKIV2L2P42285 1042 aaKnown RBP4.55□□□□□ -1.68
NEDD4-201ENST00000338963 ZNF132P52740 706 aa4.55□□□□□ -1.68
NEDD4-201ENST00000338963 EIF3BP55884 814 aaKnown RBP4.55□□□□□ -1.68
NEDD4-201ENST00000338963 NSUN2Q08J23 767 aaKnown RBP eCLIP4.55□□□□□ -1.68
NEDD4-201ENST00000338963 TAOK1Q7L7X3 1001 aa4.55□□□□□ -1.68
NEDD4-201ENST00000338963 PATL1Q86TB9 770 aaKnown RBP4.55□□□□□ -1.68
NEDD4-201ENST00000338963 ABTB1Q969K4 478 aaPredicted RBP4.55□□□□□ -1.68
NEDD4-201ENST00000338963 CHMP6Q96FZ7 201 aa4.55□□□□□ -1.68
NEDD4-201ENST00000338963 FTOQ9C0B1 505 aaKnown RBP eCLIP4.55□□□□□ -1.68
NEDD4-201ENST00000338963 ALDH8A1Q9H2A2 487 aaPredicted RBP4.55□□□□□ -1.68
NEDD4-201ENST00000338963 LRRC42Q9Y546 428 aa4.55□□□□□ -1.68
NEDD4-201ENST00000338963 SAR1BQ9Y6B6 198 aa4.55□□□□□ -1.68
NEDD4-201ENST00000338963 STK24Q9Y6E0 443 aa4.55□□□□□ -1.68
NEDD4-201ENST00000338963 KRT86O43790 486 aa4.55□□□□□ -1.68
NEDD4-201ENST00000338963 HSPA1AP0DMV8 641 aaKnown RBP4.55□□□□□ -1.68
NEDD4-201ENST00000338963 HSPA1BP0DMV9 641 aaKnown RBP4.55□□□□□ -1.68
NEDD4-201ENST00000338963 VHLP40337 213 aa4.55□□□□□ -1.68
NEDD4-201ENST00000338963 KRT6CP48668 564 aa4.55□□□□□ -1.68
NEDD4-201ENST00000338963 RIPPLY1Q0D2K3 151 aa4.55□□□□□ -1.68
NEDD4-201ENST00000338963 R3HDM1Q15032 1099 aaKnown RBP4.55□□□□□ -1.68
NEDD4-201ENST00000338963 DHX40Q8IX18 779 aaKnown RBP4.55□□□□□ -1.68
NEDD4-201ENST00000338963 CRACR2BQ8N4Y2 399 aaPredicted RBP4.55□□□□□ -1.68
NEDD4-201ENST00000338963 KLHL29Q96CT2 875 aa4.55□□□□□ -1.68
NEDD4-201ENST00000338963 DISC1Q9NRI5 854 aa4.55□□□□□ -1.68
NEDD4-201ENST00000338963 HOXC10Q9NYD6 342 aa4.55□□□□□ -1.68
NEDD4-201ENST00000338963 ASXL1Q8IXJ9 1541 aa4.55□□□□□ -1.68
NEDD4-201ENST00000338963 PDS5AQ29RF7 1337 aaKnown RBP4.55□□□□□ -1.68
NEDD4-201ENST00000338963 PSMD14O00487 310 aa4.54□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms