RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 TCP11L1Q9NUJ3 509 aa14.53□□□□□ -0.08
CCDC88A-214ENST00000621814 STXBP3O00186 592 aa14.53□□□□□ -0.08
CCDC88A-214ENST00000621814 UFL1O94874 794 aa14.53□□□□□ -0.08
CCDC88A-214ENST00000621814 PLCG1P19174 1290 aa14.53□□□□□ -0.08
CCDC88A-214ENST00000621814 TXKP42681 527 aa14.53□□□□□ -0.08
CCDC88A-214ENST00000621814 ASIC1P78348 528 aa14.53□□□□□ -0.08
CCDC88A-214ENST00000621814 SPAG1Q07617 926 aa14.53□□□□□ -0.08
CCDC88A-214ENST00000621814 MCM6Q14566 821 aa14.53□□□□□ -0.08
CCDC88A-214ENST00000621814 TSR1Q2NL82 804 aaKnown RBP14.53□□□□□ -0.08
CCDC88A-214ENST00000621814 TEX11Q8IYF3 940 aa14.53□□□□□ -0.08
CCDC88A-214ENST00000621814 LRRC15Q8TF66 581 aa14.53□□□□□ -0.08
CCDC88A-214ENST00000621814 BARHL2Q9NY43 387 aa14.53□□□□□ -0.08
CCDC88A-214ENST00000621814 FCER1AP12319 257 aa14.52□□□□□ -0.08
CCDC88A-214ENST00000621814 GNAQP50148 359 aa14.52□□□□□ -0.08
CCDC88A-214ENST00000621814 PDE4DQ08499 809 aa14.52□□□□□ -0.08
CCDC88A-214ENST00000621814 CABP7Q86V35 215 aa14.52□□□□□ -0.08
CCDC88A-214ENST00000621814 IRF2BP1Q8IU81 584 aa14.52□□□□□ -0.08
CCDC88A-214ENST00000621814 CSGALNACT2Q8N6G5 542 aa14.52□□□□□ -0.08
CCDC88A-214ENST00000621814 CNBD1Q8NA66 436 aa14.52□□□□□ -0.08
CCDC88A-214ENST00000621814 CCDC148Q8NFR7 591 aa14.52□□□□□ -0.08
CCDC88A-214ENST00000621814 PYM1Q9BRP8 204 aaKnown RBP14.52□□□□□ -0.08
CCDC88A-214ENST00000621814 TMEM260Q9NX78 707 aa14.52□□□□□ -0.08
CCDC88A-214ENST00000621814 FAM53CQ9NYF3 392 aa14.52□□□□□ -0.08
CCDC88A-214ENST00000621814 PSMA7O14818 248 aa14.52□□□□□ -0.08
CCDC88A-214ENST00000621814 TBC1D8O95759 1140 aa14.52□□□□□ -0.08
CCDC88A-214ENST00000621814 RASA1P20936 1047 aa14.52□□□□□ -0.08
CCDC88A-214ENST00000621814 STIM1Q13586 685 aa14.52□□□□□ -0.08
CCDC88A-214ENST00000621814 SOGA3Q5TF21 947 aa14.52□□□□□ -0.08
CCDC88A-214ENST00000621814 NCAPH2Q6IBW4 605 aa14.52□□□□□ -0.08
CCDC88A-214ENST00000621814 RSRC2Q7L4I2 434 aaKnown RBP14.52□□□□□ -0.08
CCDC88A-214ENST00000621814 ZNF804AQ7Z570 1209 aa14.52□□□□□ -0.08
CCDC88A-214ENST00000621814 CLEC10AQ8IUN9 316 aa14.52□□□□□ -0.08
CCDC88A-214ENST00000621814 ADSSL1Q8N142 457 aa14.52□□□□□ -0.08
CCDC88A-214ENST00000621814 RPGRQ92834 1020 aaKnown RBP14.52□□□□□ -0.08
CCDC88A-214ENST00000621814 PIGSQ96S52 555 aa14.52□□□□□ -0.08
CCDC88A-214ENST00000621814 SUGCTQ9HAC7 445 aa14.52□□□□□ -0.08
CCDC88A-214ENST00000621814 MKRN1Q9UHC7 482 aaKnown RBP14.52□□□□□ -0.08
CCDC88A-214ENST00000621814 LUC7L2Q9Y383 392 aaKnown RBP14.52□□□□□ -0.08
CCDC88A-214ENST00000621814 H7C1D1 291 aa14.52□□□□□ -0.09
CCDC88A-214ENST00000621814 TRIM21P19474 475 aaKnown RBP14.52□□□□□ -0.09
CCDC88A-214ENST00000621814 CDK8P49336 464 aa14.52□□□□□ -0.09
CCDC88A-214ENST00000621814 TRAPPC3LQ5T215 181 aa14.52□□□□□ -0.09
CCDC88A-214ENST00000621814 SRGAP1Q7Z6B7 1085 aa14.52□□□□□ -0.09
CCDC88A-214ENST00000621814 RABGGTAQ92696 567 aa14.52□□□□□ -0.09
CCDC88A-214ENST00000621814 SEC63Q9UGP8 760 aaKnown RBP14.52□□□□□ -0.09
CCDC88A-214ENST00000621814 CDC23Q9UJX2 597 aa14.52□□□□□ -0.09
CCDC88A-214ENST00000621814 FAM196AQ6ZSG2 479 aa14.51□□□□□ -0.09
CCDC88A-214ENST00000621814 MB21D1Q8N884 522 aa14.51□□□□□ -0.09
CCDC88A-214ENST00000621814 AGPAT5Q9NUQ2 364 aa14.51□□□□□ -0.09
CCDC88A-214ENST00000621814 HDAC6Q9UBN7 1215 aa14.51□□□□□ -0.09
CCDC88A-214ENST00000621814 TTF2Q9UNY4 1162 aaKnown RBP14.51□□□□□ -0.09
CCDC88A-214ENST00000621814 CNTNAP4Q9C0A0 1308 aa14.51□□□□□ -0.09
CCDC88A-214ENST00000621814 OAS2P29728 719 aaKnown RBP14.51□□□□□ -0.09
CCDC88A-214ENST00000621814 GSTO1P78417 241 aa14.51□□□□□ -0.09
CCDC88A-214ENST00000621814 GPSM2P81274 684 aa14.51□□□□□ -0.09
CCDC88A-214ENST00000621814 ATP2B2Q01814 1243 aa14.51□□□□□ -0.09
CCDC88A-214ENST00000621814 STK4Q13043 487 aa14.51□□□□□ -0.09
CCDC88A-214ENST00000621814 CEP95Q96GE4 821 aa14.51□□□□□ -0.09
CCDC88A-214ENST00000621814 SLC39A2Q9NP94 309 aa14.51□□□□□ -0.09
CCDC88A-214ENST00000621814 EPN1Q9Y6I3 576 aaPredicted RBP14.51□□□□□ -0.09
CCDC88A-214ENST00000621814 EP400Q96L91 3159 aa14.51□□□□□ -0.09
CCDC88A-214ENST00000621814 LRRC10BA6NIK2 292 aa14.5□□□□□ -0.09
CCDC88A-214ENST00000621814 NKRFO15226 690 aaKnown RBP eCLIP14.5□□□□□ -0.09
CCDC88A-214ENST00000621814 MTIF2P46199 727 aaKnown RBP14.5□□□□□ -0.09
CCDC88A-214ENST00000621814 GRAPQ13588 217 aa14.5□□□□□ -0.09
CCDC88A-214ENST00000621814 SMC1AQ14683 1233 aaKnown RBP14.5□□□□□ -0.09
CCDC88A-214ENST00000621814 DYMQ7RTS9 669 aa14.5□□□□□ -0.09
CCDC88A-214ENST00000621814 GRAPLQ8TC17 118 aaPredicted RBP14.5□□□□□ -0.09
CCDC88A-214ENST00000621814 TBCKQ8TEA7 893 aa14.5□□□□□ -0.09
CCDC88A-214ENST00000621814 CAPZA3Q96KX2 299 aa14.5□□□□□ -0.09
CCDC88A-214ENST00000621814 NAPGQ99747 312 aaPredicted RBP14.5□□□□□ -0.09
CCDC88A-214ENST00000621814 HINFPQ9BQA5 517 aa14.5□□□□□ -0.09
CCDC88A-214ENST00000621814 SH3GLB2Q9NR46 395 aa14.5□□□□□ -0.09
CCDC88A-214ENST00000621814 EXOC1Q9NV70 894 aa14.5□□□□□ -0.09
CCDC88A-214ENST00000621814 USP17L5A8MUK1 530 aa14.5□□□□□ -0.09
CCDC88A-214ENST00000621814 C6orf229H3BNL8 230 aa14.5□□□□□ -0.09
CCDC88A-214ENST00000621814 RIMBP2O15034 1052 aa14.5□□□□□ -0.09
CCDC88A-214ENST00000621814 SRGAP2O75044 1071 aa14.5□□□□□ -0.09
CCDC88A-214ENST00000621814 MFSD14BQ5SR56 506 aa14.5□□□□□ -0.09
CCDC88A-214ENST00000621814 LRRC47Q8N1G4 583 aaKnown RBP14.5□□□□□ -0.09
CCDC88A-214ENST00000621814 COA7Q96BR5 231 aa14.5□□□□□ -0.09
CCDC88A-214ENST00000621814 CCDC51Q96ER9 411 aa14.5□□□□□ -0.09
CCDC88A-214ENST00000621814 RRP36Q96EU6 259 aaKnown RBP14.5□□□□□ -0.09
CCDC88A-214ENST00000621814 PNKPQ96T60 521 aa14.5□□□□□ -0.09
CCDC88A-214ENST00000621814 TUBGCP2Q9BSJ2 902 aa14.5□□□□□ -0.09
CCDC88A-214ENST00000621814 NDUFA10O95299 355 aa14.5□□□□□ -0.09
CCDC88A-214ENST00000621814 OR52Z1P0C646 297 aa14.5□□□□□ -0.09
CCDC88A-214ENST00000621814 TBC1D8BQ0IIM8 1120 aa14.5□□□□□ -0.09
CCDC88A-214ENST00000621814 NONOQ15233 471 aaKnown RBP eCLIP14.5□□□□□ -0.09
CCDC88A-214ENST00000621814 LONRF2Q1L5Z9 754 aa14.5□□□□□ -0.09
CCDC88A-214ENST00000621814 OR8K1Q8NGG5 319 aa14.5□□□□□ -0.09
CCDC88A-214ENST00000621814 GJA10Q969M2 543 aa14.5□□□□□ -0.09
CCDC88A-214ENST00000621814 ITIH6Q6UXX5 1313 aa14.5□□□□□ -0.09
CCDC88A-214ENST00000621814 PALM3A6NDB9 673 aaPredicted RBP14.49□□□□□ -0.09
CCDC88A-214ENST00000621814 M0R2N6 131 aa14.49□□□□□ -0.09
CCDC88A-214ENST00000621814 KLRC4O43908 158 aa14.49□□□□□ -0.09
CCDC88A-214ENST00000621814 LDHCP07864 332 aa14.49□□□□□ -0.09
CCDC88A-214ENST00000621814 CCDC122Q5T0U0 273 aa14.49□□□□□ -0.09
CCDC88A-214ENST00000621814 ANKRD40Q6AI12 368 aa14.49□□□□□ -0.09
CCDC88A-214ENST00000621814 KIAA1328Q86T90 577 aa14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms