RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 TRIM73Q86UV7 250 aa5.52□□□□□ -1.53
VPS13D-214ENST00000620676 LRRC1Q9BTT6 524 aa5.52□□□□□ -1.53
VPS13D-214ENST00000620676 POLA1P09884 1462 aaPredicted RBP5.52□□□□□ -1.53
VPS13D-214ENST00000620676 KRT5P13647 590 aa5.52□□□□□ -1.53
VPS13D-214ENST00000620676 SEC63Q9UGP8 760 aaKnown RBP5.52□□□□□ -1.53
VPS13D-214ENST00000620676 L3MBTL1Q9Y468 752 aa5.52□□□□□ -1.53
VPS13D-214ENST00000620676 EME2A4GXA9 379 aaPredicted RBP5.52□□□□□ -1.53
VPS13D-214ENST00000620676 ARL1P40616 181 aaPredicted RBP5.52□□□□□ -1.53
VPS13D-214ENST00000620676 TESK2Q96S53 571 aa5.52□□□□□ -1.53
VPS13D-214ENST00000620676 PDE4DQ08499 809 aa5.52□□□□□ -1.53
VPS13D-214ENST00000620676 PAG1Q9NWQ8 432 aa5.52□□□□□ -1.53
VPS13D-214ENST00000620676 KCNA3P22001 575 aa5.52□□□□□ -1.53
VPS13D-214ENST00000620676 TMC4Q7Z404 712 aa5.52□□□□□ -1.53
VPS13D-214ENST00000620676 SEC16BQ96JE7 1060 aa5.52□□□□□ -1.53
VPS13D-214ENST00000620676 FUT8Q9BYC5 575 aa5.52□□□□□ -1.53
VPS13D-214ENST00000620676 ETNK1Q9HBU6 452 aa5.52□□□□□ -1.53
VPS13D-214ENST00000620676 RPN1P04843 607 aaKnown RBP5.52□□□□□ -1.53
VPS13D-214ENST00000620676 PPP1R2P41236 205 aa5.52□□□□□ -1.53
VPS13D-214ENST00000620676 IRX4P78413 519 aa5.52□□□□□ -1.53
VPS13D-214ENST00000620676 PLEKHO1Q53GL0 409 aaPredicted RBP5.52□□□□□ -1.53
VPS13D-214ENST00000620676 PPP1R2P3Q6NXS1 205 aa5.52□□□□□ -1.53
VPS13D-214ENST00000620676 PRCCQ92733 491 aaPredicted RBP5.52□□□□□ -1.53
VPS13D-214ENST00000620676 IBTKQ9P2D0 1353 aaPredicted RBP5.52□□□□□ -1.53
VPS13D-214ENST00000620676 SERPINB3P29508 390 aa5.52□□□□□ -1.53
VPS13D-214ENST00000620676 NAA16Q6N069 864 aaPredicted RBP5.52□□□□□ -1.53
VPS13D-214ENST00000620676 NYAP1Q6ZVC0 841 aa5.52□□□□□ -1.53
VPS13D-214ENST00000620676 EGFL6Q8IUX8 553 aa5.52□□□□□ -1.53
VPS13D-214ENST00000620676 NHEJ1Q9H9Q4 299 aaPredicted RBP5.52□□□□□ -1.53
VPS13D-214ENST00000620676 ACTN4O43707 911 aaKnown RBP5.52□□□□□ -1.53
VPS13D-214ENST00000620676 FAM200BP0CF97 657 aa5.52□□□□□ -1.53
VPS13D-214ENST00000620676 YY1P25490 414 aa5.52□□□□□ -1.53
VPS13D-214ENST00000620676 POLR2FP61218 127 aaKnown RBP5.52□□□□□ -1.53
VPS13D-214ENST00000620676 MLKLQ8NB16 471 aa5.52□□□□□ -1.53
VPS13D-214ENST00000620676 DDX18Q9NVP1 670 aaKnown RBP5.52□□□□□ -1.53
VPS13D-214ENST00000620676 CASKIN1Q8WXD9 1431 aa5.52□□□□□ -1.53
VPS13D-214ENST00000620676 ABCD1P33897 745 aa5.52□□□□□ -1.53
VPS13D-214ENST00000620676 PHEXP78562 749 aa5.52□□□□□ -1.53
VPS13D-214ENST00000620676 PCYT1AP49585 367 aa5.52□□□□□ -1.53
VPS13D-214ENST00000620676 USP14P54578 494 aa5.52□□□□□ -1.53
VPS13D-214ENST00000620676 KRT31Q15323 416 aa5.52□□□□□ -1.53
VPS13D-214ENST00000620676 NBPF3Q9H094 633 aa5.52□□□□□ -1.53
VPS13D-214ENST00000620676 ZSWIM6Q9HCJ5 1215 aa5.52□□□□□ -1.53
VPS13D-214ENST00000620676 ADGRF5Q8IZF2 1346 aa5.51□□□□□ -1.53
VPS13D-214ENST00000620676 TATP17735 454 aaPredicted RBP5.51□□□□□ -1.53
VPS13D-214ENST00000620676 CMA1P23946 247 aa5.51□□□□□ -1.53
VPS13D-214ENST00000620676 EIF4A3P38919 411 aaKnown RBP5.51□□□□□ -1.53
VPS13D-214ENST00000620676 ACAP1Q15027 740 aa5.51□□□□□ -1.53
VPS13D-214ENST00000620676 ADALQ6DHV7 355 aa5.51□□□□□ -1.53
VPS13D-214ENST00000620676 VPS54Q9P1Q0 977 aa5.51□□□□□ -1.53
VPS13D-214ENST00000620676 CTTNBP2NLQ9P2B4 639 aa5.51□□□□□ -1.53
VPS13D-214ENST00000620676 IL16Q14005 1332 aa5.51□□□□□ -1.53
VPS13D-214ENST00000620676 THAP12O43422 761 aa5.51□□□□□ -1.53
VPS13D-214ENST00000620676 EEF1B2P24534 225 aaKnown RBP5.51□□□□□ -1.53
VPS13D-214ENST00000620676 PAPOLBQ9NRJ5 636 aaKnown RBP5.51□□□□□ -1.53
VPS13D-214ENST00000620676 AMPD3Q01432 767 aa5.51□□□□□ -1.53
VPS13D-214ENST00000620676 KIF6Q6ZMV9 814 aa5.51□□□□□ -1.53
VPS13D-214ENST00000620676 HEATR4Q86WZ0 1026 aa5.51□□□□□ -1.53
VPS13D-214ENST00000620676 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP5.51□□□□□ -1.53
VPS13D-214ENST00000620676 IQUBQ8NA54 791 aa5.51□□□□□ -1.53
VPS13D-214ENST00000620676 PRPF31Q8WWY3 499 aaKnown RBP5.51□□□□□ -1.53
VPS13D-214ENST00000620676 FERMT2Q96AC1 680 aa5.51□□□□□ -1.53
VPS13D-214ENST00000620676 STX10O60499 249 aa5.51□□□□□ -1.53
VPS13D-214ENST00000620676 PLS3P13797 630 aa5.51□□□□□ -1.53
VPS13D-214ENST00000620676 CYB5D1Q6P9G0 228 aa5.51□□□□□ -1.53
VPS13D-214ENST00000620676 TRPC6Q9Y210 931 aa5.51□□□□□ -1.53
VPS13D-214ENST00000620676 LRRIQ3A6PVS8 624 aaPredicted RBP5.51□□□□□ -1.53
VPS13D-214ENST00000620676 TRIM37O94972 964 aa5.51□□□□□ -1.53
VPS13D-214ENST00000620676 CABP4P57796 275 aa5.51□□□□□ -1.53
VPS13D-214ENST00000620676 TRMT2AQ8IZ69 625 aaKnown RBP5.51□□□□□ -1.53
VPS13D-214ENST00000620676 ARHGAP26Q9UNA1 814 aa5.51□□□□□ -1.53
VPS13D-214ENST00000620676 ATP6V0A2Q9Y487 856 aa5.51□□□□□ -1.53
VPS13D-214ENST00000620676 KDM1AO60341 852 aa5.51□□□□□ -1.53
VPS13D-214ENST00000620676 MDH1P40925 334 aaKnown RBP5.51□□□□□ -1.53
VPS13D-214ENST00000620676 GALNT4Q8N4A0 578 aa5.51□□□□□ -1.53
VPS13D-214ENST00000620676 SUPT20HQ8NEM7 779 aa5.51□□□□□ -1.53
VPS13D-214ENST00000620676 AIFM3Q96NN9 605 aa5.51□□□□□ -1.53
VPS13D-214ENST00000620676 MTUS1Q9ULD2 1270 aa5.51□□□□□ -1.53
VPS13D-214ENST00000620676 PALMO75781 387 aa5.51□□□□□ -1.53
VPS13D-214ENST00000620676 GFPT1Q06210 699 aaPredicted RBP5.51□□□□□ -1.53
VPS13D-214ENST00000620676 KLHL30Q0D2K2 578 aa5.51□□□□□ -1.53
VPS13D-214ENST00000620676 SLMAPQ14BN4 828 aa5.51□□□□□ -1.53
VPS13D-214ENST00000620676 HOMER3Q9NSC5 361 aa5.51□□□□□ -1.53
VPS13D-214ENST00000620676 ANKRD20A3Q5VUR7 823 aa5.51□□□□□ -1.53
VPS13D-214ENST00000620676 ZNF594Q96JF6 807 aaPredicted RBP5.51□□□□□ -1.53
VPS13D-214ENST00000620676 CARD9Q9H257 536 aa5.51□□□□□ -1.53
VPS13D-214ENST00000620676 FYCO1Q9BQS8 1478 aa5.51□□□□□ -1.53
VPS13D-214ENST00000620676 CCT8L1PA6NM43 557 aa5.51□□□□□ -1.53
VPS13D-214ENST00000620676 APOEP02649 317 aa5.51□□□□□ -1.53
VPS13D-214ENST00000620676 KLK7P49862 253 aa5.51□□□□□ -1.53
VPS13D-214ENST00000620676 CCNT1O60563 726 aaKnown RBP5.51□□□□□ -1.53
VPS13D-214ENST00000620676 EEF1DP29692 281 aaKnown RBP5.51□□□□□ -1.53
VPS13D-214ENST00000620676 ZBTB3Q9H5J0 574 aa5.51□□□□□ -1.53
VPS13D-214ENST00000620676 NVLO15381 856 aaKnown RBP5.51□□□□□ -1.53
VPS13D-214ENST00000620676 H2AFXP16104 143 aaPredicted RBP5.51□□□□□ -1.53
VPS13D-214ENST00000620676 SAT1P21673 171 aa5.51□□□□□ -1.53
VPS13D-214ENST00000620676 CYTH1Q15438 398 aa5.51□□□□□ -1.53
VPS13D-214ENST00000620676 ZNF507Q8TCN5 953 aa5.51□□□□□ -1.53
VPS13D-214ENST00000620676 ASCC2Q9H1I8 757 aaPredicted RBP5.51□□□□□ -1.53
VPS13D-214ENST00000620676 ZFATQ9P243 1243 aa5.51□□□□□ -1.53
VPS13D-214ENST00000620676 RAPGEF5Q92565 580 aa5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms