RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 LMOD1P29536 600 aaPredicted RBP12.05□□□□□ -0.48
SS18-217ENST00000580958 AXDND1Q5T1B0 1012 aaPredicted RBP12.05□□□□□ -0.48
SS18-217ENST00000580958 ADALQ6DHV7 355 aa12.05□□□□□ -0.48
SS18-217ENST00000580958 GALNT17Q6IS24 598 aa12.05□□□□□ -0.48
SS18-217ENST00000580958 CCDC73Q6ZRK6 1079 aa12.05□□□□□ -0.48
SS18-217ENST00000580958 PIK3AP1Q6ZUJ8 805 aa12.05□□□□□ -0.48
SS18-217ENST00000580958 CCDC84Q86UT8 332 aaPredicted RBP12.05□□□□□ -0.48
SS18-217ENST00000580958 ZNF713Q8N859 430 aaPredicted RBP12.05□□□□□ -0.48
SS18-217ENST00000580958 JMYQ8N9B5 988 aa12.05□□□□□ -0.48
SS18-217ENST00000580958 MRPS27Q92552 414 aaKnown RBP12.05□□□□□ -0.48
SS18-217ENST00000580958 COA7Q96BR5 231 aa12.05□□□□□ -0.48
SS18-217ENST00000580958 MTMR8Q96EF0 704 aa12.05□□□□□ -0.48
SS18-217ENST00000580958 GMCL1Q96IK5 515 aa12.05□□□□□ -0.48
SS18-217ENST00000580958 C6orf50Q9HD87 102 aa12.05□□□□□ -0.48
SS18-217ENST00000580958 SCUBE2Q9NQ36 999 aa12.05□□□□□ -0.48
SS18-217ENST00000580958 DDX19AQ9NUU7 478 aaKnown RBP12.05□□□□□ -0.48
SS18-217ENST00000580958 DACT1Q9NYF0 836 aa12.05□□□□□ -0.48
SS18-217ENST00000580958 SYNPO2Q9UMS6 1093 aa12.05□□□□□ -0.48
SS18-217ENST00000580958 PCDHA6Q9UN73 950 aa12.05□□□□□ -0.48
SS18-217ENST00000580958 TMX2Q9Y320 296 aa12.05□□□□□ -0.48
SS18-217ENST00000580958 PCDHA8Q9Y5H6 950 aa12.05□□□□□ -0.48
SS18-217ENST00000580958 SCN4AP35499 1836 aa12.04□□□□□ -0.48
SS18-217ENST00000580958 WDR90Q96KV7 1748 aa12.04□□□□□ -0.48
SS18-217ENST00000580958 TMEM232C9JQI7 657 aa12.04□□□□□ -0.48
SS18-217ENST00000580958 M0R2N6 131 aa12.04□□□□□ -0.48
SS18-217ENST00000580958 WNT7AO00755 349 aa12.04□□□□□ -0.48
SS18-217ENST00000580958 PPP1R11O60927 126 aaPredicted RBP12.04□□□□□ -0.48
SS18-217ENST00000580958 ASNSP08243 561 aa12.04□□□□□ -0.48
SS18-217ENST00000580958 GPR162Q16538 588 aa12.04□□□□□ -0.48
SS18-217ENST00000580958 KIAA1755Q5JYT7 1200 aa12.04□□□□□ -0.48
SS18-217ENST00000580958 TTC38Q5R3I4 469 aa12.04□□□□□ -0.48
SS18-217ENST00000580958 SYDE2Q5VT97 1194 aa12.04□□□□□ -0.48
SS18-217ENST00000580958 PRAMEF18Q5VWM3 479 aa12.04□□□□□ -0.48
SS18-217ENST00000580958 DCAF15Q66K64 600 aa12.04□□□□□ -0.48
SS18-217ENST00000580958 LRSAM1Q6UWE0 723 aa12.04□□□□□ -0.48
SS18-217ENST00000580958 SPICE1Q8N0Z3 855 aa12.04□□□□□ -0.48
SS18-217ENST00000580958 ZNF341Q9BYN7 854 aa12.04□□□□□ -0.48
SS18-217ENST00000580958 GLIS2Q9BZE0 524 aaPredicted RBP12.04□□□□□ -0.48
SS18-217ENST00000580958 ZMYND12Q9H0C1 365 aa12.04□□□□□ -0.48
SS18-217ENST00000580958 NUP62CLQ9H1M0 184 aa12.04□□□□□ -0.48
SS18-217ENST00000580958 CLSTN2Q9H4D0 955 aa12.04□□□□□ -0.48
SS18-217ENST00000580958 GOPCQ9HD26 462 aa12.04□□□□□ -0.48
SS18-217ENST00000580958 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.04□□□□□ -0.48
SS18-217ENST00000580958 CEP131Q9UPN4 1083 aa12.04□□□□□ -0.48
SS18-217ENST00000580958 PAPPA2Q9BXP8 1791 aa12.03□□□□□ -0.48
SS18-217ENST00000580958 CCDC194A0A1B0GVG4 234 aa12.03□□□□□ -0.48
SS18-217ENST00000580958 A0A1B0GVL5 298 aa12.03□□□□□ -0.48
SS18-217ENST00000580958 ESYT2A0FGR8 921 aa12.03□□□□□ -0.48
SS18-217ENST00000580958 ZBTB5O15062 677 aa12.03□□□□□ -0.48
SS18-217ENST00000580958 CUTAO60888 179 aa12.03□□□□□ -0.48
SS18-217ENST00000580958 LETM1O95202 739 aaPredicted RBP12.03□□□□□ -0.48
SS18-217ENST00000580958 PYGBP11216 843 aa12.03□□□□□ -0.48
SS18-217ENST00000580958 GNA11P29992 359 aa12.03□□□□□ -0.48
SS18-217ENST00000580958 FAM160A1Q05DH4 1040 aa12.03□□□□□ -0.48
SS18-217ENST00000580958 IKQ13123 557 aaPredicted RBP12.03□□□□□ -0.48
SS18-217ENST00000580958 ZNF174Q15697 407 aa12.03□□□□□ -0.48
SS18-217ENST00000580958 ZYXQ15942 572 aaKnown RBP12.03□□□□□ -0.48
SS18-217ENST00000580958 CDC37Q16543 378 aaPredicted RBP12.03□□□□□ -0.48
SS18-217ENST00000580958 QRICH1Q2TAL8 776 aa12.03□□□□□ -0.48
SS18-217ENST00000580958 PPP1R18Q6NYC8 613 aa12.03□□□□□ -0.48
SS18-217ENST00000580958 KRI1Q8N9T8 703 aaKnown RBP12.03□□□□□ -0.48
SS18-217ENST00000580958 CLIC6Q96NY7 704 aa12.03□□□□□ -0.48
SS18-217ENST00000580958 SH2D4AQ9H788 454 aa12.03□□□□□ -0.48
SS18-217ENST00000580958 VCPKMTQ9H867 229 aa12.03□□□□□ -0.48
SS18-217ENST00000580958 ADARB2Q9NS39 739 aaKnown RBP12.03□□□□□ -0.48
SS18-217ENST00000580958 SSC5DA1L4H1 1573 aa12.03□□□□□ -0.48
SS18-217ENST00000580958 PTPRFP10586 1907 aa12.03□□□□□ -0.48
SS18-217ENST00000580958 CTNND1O60716 968 aaKnown RBP12.02□□□□□ -0.49
SS18-217ENST00000580958 CMA1P23946 247 aa12.02□□□□□ -0.49
SS18-217ENST00000580958 INPP5BP32019 993 aa12.02□□□□□ -0.49
SS18-217ENST00000580958 TRAPPC10P48553 1259 aa12.02□□□□□ -0.49
SS18-217ENST00000580958 ADCY7P51828 1080 aa12.02□□□□□ -0.49
SS18-217ENST00000580958 SNAP25P60880 206 aa12.02□□□□□ -0.49
SS18-217ENST00000580958 CAMK4Q16566 473 aa12.02□□□□□ -0.49
SS18-217ENST00000580958 FAM83BQ5T0W9 1011 aa12.02□□□□□ -0.49
SS18-217ENST00000580958 L1TD1Q5T7N2 865 aaKnown RBP12.02□□□□□ -0.49
SS18-217ENST00000580958 BTNL9Q6UXG8 535 aa12.02□□□□□ -0.49
SS18-217ENST00000580958 ENGASEQ8NFI3 743 aa12.02□□□□□ -0.49
SS18-217ENST00000580958 HOOK2Q96ED9 719 aa12.02□□□□□ -0.49
SS18-217ENST00000580958 TMEM106CQ9BVX2 250 aa12.02□□□□□ -0.49
SS18-217ENST00000580958 TNMDQ9H2S6 317 aa12.02□□□□□ -0.49
SS18-217ENST00000580958 TSPY26PQ9H489 355 aa12.02□□□□□ -0.49
SS18-217ENST00000580958 GINM1Q9NU53 330 aa12.02□□□□□ -0.49
SS18-217ENST00000580958 ZNF112Q9UJU3 913 aa12.02□□□□□ -0.49
SS18-217ENST00000580958 FBXO2Q9UK22 296 aaPredicted RBP12.02□□□□□ -0.49
SS18-217ENST00000580958 PPP2R3BQ9Y5P8 575 aa12.02□□□□□ -0.49
SS18-217ENST00000580958 MRVI1Q9Y6F6 885 aa12.02□□□□□ -0.49
SS18-217ENST00000580958 PITPNM2Q9BZ72 1349 aa12.02□□□□□ -0.49
SS18-217ENST00000580958 COL11A1P12107 1806 aaPredicted RBP12.02□□□□□ -0.49
SS18-217ENST00000580958 RBBP6Q7Z6E9 1792 aaKnown RBP12.01□□□□□ -0.49
SS18-217ENST00000580958 KINO60870 393 aaKnown RBP12.01□□□□□ -0.49
SS18-217ENST00000580958 BMP15O95972 392 aa12.01□□□□□ -0.49
SS18-217ENST00000580958 PFKFB1P16118 471 aa12.01□□□□□ -0.49
SS18-217ENST00000580958 PTPREP23469 700 aa12.01□□□□□ -0.49
SS18-217ENST00000580958 NDUFA8P51970 172 aa12.01□□□□□ -0.49
SS18-217ENST00000580958 GRIN1Q05586 938 aa12.01□□□□□ -0.49
SS18-217ENST00000580958 SNW1Q13573 536 aaKnown RBP12.01□□□□□ -0.49
SS18-217ENST00000580958 MAP3K11Q16584 847 aa12.01□□□□□ -0.49
SS18-217ENST00000580958 INF2Q27J81 1249 aa12.01□□□□□ -0.49
SS18-217ENST00000580958 IER5LQ5T953 404 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms