RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 SH2D3CQ8N5H7 860 aa10.7□□□□□ -0.7
CCDC40-212ENST00000574799 TBC1D31Q96DN5 1066 aa10.7□□□□□ -0.7
CCDC40-212ENST00000574799 DUOX1Q9NRD9 1551 aa10.7□□□□□ -0.7
CCDC40-212ENST00000574799 GPAA1O43292 621 aa10.7□□□□□ -0.7
CCDC40-212ENST00000574799 SLC7A5Q01650 507 aa10.7□□□□□ -0.7
CCDC40-212ENST00000574799 MSL1Q68DK7 614 aa10.7□□□□□ -0.7
CCDC40-212ENST00000574799 NAIF1Q69YI7 327 aaPredicted RBP10.7□□□□□ -0.7
CCDC40-212ENST00000574799 APPBP2Q92624 585 aa10.7□□□□□ -0.7
CCDC40-212ENST00000574799 LRRC4BQ9NT99 713 aa10.7□□□□□ -0.7
CCDC40-212ENST00000574799 MROH5Q6ZUA9 1318 aa10.7□□□□□ -0.7
CCDC40-212ENST00000574799 PAX7P23759 505 aa10.69□□□□□ -0.7
CCDC40-212ENST00000574799 PLCD1P51178 756 aa10.69□□□□□ -0.7
CCDC40-212ENST00000574799 CYB5R4Q7L1T6 521 aa10.69□□□□□ -0.7
CCDC40-212ENST00000574799 MYO1AQ9UBC5 1043 aa10.69□□□□□ -0.7
CCDC40-212ENST00000574799 SRP68Q9UHB9 627 aaKnown RBP10.69□□□□□ -0.7
CCDC40-212ENST00000574799 TRIM21P19474 475 aaKnown RBP10.69□□□□□ -0.7
CCDC40-212ENST00000574799 CYLC1P35663 651 aaPredicted RBP10.69□□□□□ -0.7
CCDC40-212ENST00000574799 KRT83P78385 493 aa10.69□□□□□ -0.7
CCDC40-212ENST00000574799 KIF5AQ12840 1032 aa10.69□□□□□ -0.7
CCDC40-212ENST00000574799 PUM3Q15397 648 aaKnown RBP10.69□□□□□ -0.7
CCDC40-212ENST00000574799 GPIHBP1Q8IV16 184 aa10.69□□□□□ -0.7
CCDC40-212ENST00000574799 NUP133Q8WUM0 1156 aa10.69□□□□□ -0.7
CCDC40-212ENST00000574799 CCDC51Q96ER9 411 aa10.69□□□□□ -0.7
CCDC40-212ENST00000574799 RPGRIP1Q96KN7 1286 aa10.69□□□□□ -0.7
CCDC40-212ENST00000574799 FAM184BQ9ULE4 1060 aa10.69□□□□□ -0.7
CCDC40-212ENST00000574799 A6NNZ2 444 aa10.69□□□□□ -0.7
CCDC40-212ENST00000574799 BCAMP50895 628 aa10.69□□□□□ -0.7
CCDC40-212ENST00000574799 FXR1P51114 621 aaKnown RBP eCLIP10.69□□□□□ -0.7
CCDC40-212ENST00000574799 EVX2Q03828 476 aa10.69□□□□□ -0.7
CCDC40-212ENST00000574799 TUBB8Q3ZCM7 444 aa10.69□□□□□ -0.7
CCDC40-212ENST00000574799 SPATA1Q5VX52 437 aa10.69□□□□□ -0.7
CCDC40-212ENST00000574799 WDR93Q6P2C0 686 aa10.69□□□□□ -0.7
CCDC40-212ENST00000574799 KCNV1Q6PIU1 500 aa10.69□□□□□ -0.7
CCDC40-212ENST00000574799 RASGRP2Q7LDG7 609 aa10.69□□□□□ -0.7
CCDC40-212ENST00000574799 LPIN2Q92539 896 aa10.69□□□□□ -0.7
CCDC40-212ENST00000574799 MYL10Q9BUA6 226 aa10.69□□□□□ -0.7
CCDC40-212ENST00000574799 HAUS4Q9H6D7 363 aa10.69□□□□□ -0.7
CCDC40-212ENST00000574799 NIP7Q9Y221 180 aaKnown RBP eCLIP10.69□□□□□ -0.7
CCDC40-212ENST00000574799 ZNF532Q9HCE3 1301 aa10.69□□□□□ -0.7
CCDC40-212ENST00000574799 COL11A2P13942 1736 aaPredicted RBP10.68□□□□□ -0.7
CCDC40-212ENST00000574799 MYH6P13533 1939 aa10.68□□□□□ -0.7
CCDC40-212ENST00000574799 PPP1R12BO60237 982 aaPredicted RBP10.68□□□□□ -0.7
CCDC40-212ENST00000574799 PPP6R2O75170 966 aa10.68□□□□□ -0.7
CCDC40-212ENST00000574799 ATP1A1P05023 1023 aaKnown RBP10.68□□□□□ -0.7
CCDC40-212ENST00000574799 SSRP1Q08945 709 aaKnown RBP10.68□□□□□ -0.7
CCDC40-212ENST00000574799 TBX2Q13207 712 aaPredicted RBP10.68□□□□□ -0.7
CCDC40-212ENST00000574799 SPATS2Q86XZ4 545 aaKnown RBP10.68□□□□□ -0.7
CCDC40-212ENST00000574799 UBAC1Q9BSL1 405 aa10.68□□□□□ -0.7
CCDC40-212ENST00000574799 HSD3B7Q9H2F3 369 aa10.68□□□□□ -0.7
CCDC40-212ENST00000574799 NEDD4P46934 1319 aa10.68□□□□□ -0.7
CCDC40-212ENST00000574799 BUB1BO60566 1050 aaPredicted RBP10.68□□□□□ -0.7
CCDC40-212ENST00000574799 USO1O60763 962 aaKnown RBP10.68□□□□□ -0.7
CCDC40-212ENST00000574799 TOM1O60784 492 aa10.68□□□□□ -0.7
CCDC40-212ENST00000574799 PDE6AP16499 860 aa10.68□□□□□ -0.7
CCDC40-212ENST00000574799 CHRNDQ07001 517 aa10.68□□□□□ -0.7
CCDC40-212ENST00000574799 NNTQ13423 1086 aa10.68□□□□□ -0.7
CCDC40-212ENST00000574799 FOXP4Q8IVH2 680 aaPredicted RBP10.68□□□□□ -0.7
CCDC40-212ENST00000574799 STRBPQ96SI9 672 aaKnown RBP10.68□□□□□ -0.7
CCDC40-212ENST00000574799 RBM28Q9NW13 759 aaKnown RBP10.68□□□□□ -0.7
CCDC40-212ENST00000574799 PPP1R12AO14974 1030 aaPredicted RBP10.68□□□□□ -0.7
CCDC40-212ENST00000574799 ZBTB43O43298 467 aa10.68□□□□□ -0.7
CCDC40-212ENST00000574799 ABL1P00519 1130 aa10.68□□□□□ -0.7
CCDC40-212ENST00000574799 CASP1P29466 404 aa10.68□□□□□ -0.7
CCDC40-212ENST00000574799 GUCY2FP51841 1108 aa10.68□□□□□ -0.7
CCDC40-212ENST00000574799 GUCY1A3Q02108 690 aa10.68□□□□□ -0.7
CCDC40-212ENST00000574799 NR1I3Q14994 352 aa10.68□□□□□ -0.7
CCDC40-212ENST00000574799 C8orf74Q6P047 294 aa10.68□□□□□ -0.7
CCDC40-212ENST00000574799 PNMA8AQ86V59 439 aaPredicted RBP10.68□□□□□ -0.7
CCDC40-212ENST00000574799 TEX11Q8IYF3 940 aa10.68□□□□□ -0.7
CCDC40-212ENST00000574799 MICAL1Q8TDZ2 1067 aa10.68□□□□□ -0.7
CCDC40-212ENST00000574799 CELF1Q92879 486 aaKnown RBP10.68□□□□□ -0.7
CCDC40-212ENST00000574799 KCNG1Q9UIX4 513 aa10.68□□□□□ -0.7
CCDC40-212ENST00000574799 TFR2Q9UP52 801 aa10.68□□□□□ -0.7
CCDC40-212ENST00000574799 CEP131Q9UPN4 1083 aa10.68□□□□□ -0.7
CCDC40-212ENST00000574799 ADAMTSL1Q8N6G6 1762 aa10.67□□□□□ -0.7
CCDC40-212ENST00000574799 SPAG1Q07617 926 aa10.67□□□□□ -0.7
CCDC40-212ENST00000574799 SF3B3Q15393 1217 aaKnown RBP10.67□□□□□ -0.7
CCDC40-212ENST00000574799 SLC10A5Q5PT55 438 aa10.67□□□□□ -0.7
CCDC40-212ENST00000574799 RESP18Q5W5W9 173 aa10.67□□□□□ -0.7
CCDC40-212ENST00000574799 AP1ARQ63HQ0 302 aa10.67□□□□□ -0.7
CCDC40-212ENST00000574799 CLEC4GQ6UXB4 293 aa10.67□□□□□ -0.7
CCDC40-212ENST00000574799 AMOTL1Q8IY63 956 aa10.67□□□□□ -0.7
CCDC40-212ENST00000574799 SPATA5Q8NB90 893 aa10.67□□□□□ -0.7
CCDC40-212ENST00000574799 UBE2Q2LH0YL09 131 aa10.67□□□□□ -0.7
CCDC40-212ENST00000574799 ZNF185O15231 689 aa10.67□□□□□ -0.7
CCDC40-212ENST00000574799 TACC1O75410 805 aa10.67□□□□□ -0.7
CCDC40-212ENST00000574799 NDUFA10O95299 355 aa10.67□□□□□ -0.7
CCDC40-212ENST00000574799 CPLX4Q7Z7G2 160 aa10.67□□□□□ -0.7
CCDC40-212ENST00000574799 MSL3Q8N5Y2 521 aaKnown RBP10.67□□□□□ -0.7
CCDC40-212ENST00000574799 MIEF2Q96C03 454 aa10.67□□□□□ -0.7
CCDC40-212ENST00000574799 CNNM1Q9NRU3 951 aa10.67□□□□□ -0.7
CCDC40-212ENST00000574799 FAM217BQ9NTX9 383 aaPredicted RBP10.67□□□□□ -0.7
CCDC40-212ENST00000574799 KCNJ14Q9UNX9 436 aa10.67□□□□□ -0.7
CCDC40-212ENST00000574799 SKAP2O75563 359 aaPredicted RBP10.67□□□□□ -0.7
CCDC40-212ENST00000574799 AARSP49588 968 aaKnown RBP eCLIP10.67□□□□□ -0.7
CCDC40-212ENST00000574799 UBE3CQ15386 1083 aa10.67□□□□□ -0.7
CCDC40-212ENST00000574799 CCDC50Q8IVM0 306 aa10.67□□□□□ -0.7
CCDC40-212ENST00000574799 ZKSCAN4Q969J2 545 aaPredicted RBP10.67□□□□□ -0.7
CCDC40-212ENST00000574799 CCDC43Q96MW1 224 aaKnown RBP10.67□□□□□ -0.7
CCDC40-212ENST00000574799 CPSF2Q9P2I0 782 aaKnown RBP10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms