RNA–Protein interactions for RNA: ENST00000571545.1

CIITA-207, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 3

Gene CIITA, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-207ENST00000571545 TCP11L1Q9NUJ3 509 aa11.5□□□□□ -0.57
CIITA-207ENST00000571545 FAM184BQ9ULE4 1060 aa11.5□□□□□ -0.57
CIITA-207ENST00000571545 FGAP02671 866 aa11.49□□□□□ -0.57
CIITA-207ENST00000571545 TOP1P11387 765 aaKnown RBP11.49□□□□□ -0.57
CIITA-207ENST00000571545 MCCP23508 829 aa11.49□□□□□ -0.57
CIITA-207ENST00000571545 NOVP48745 357 aa11.49□□□□□ -0.57
CIITA-207ENST00000571545 SLC4A3P48751 1232 aa11.49□□□□□ -0.57
CIITA-207ENST00000571545 RTP1P59025 263 aa11.49□□□□□ -0.57
CIITA-207ENST00000571545 SNX17Q15036 470 aa11.49□□□□□ -0.57
CIITA-207ENST00000571545 LRIT3Q3SXY7 679 aa11.49□□□□□ -0.57
CIITA-207ENST00000571545 SLC39A5Q6ZMH5 540 aa11.49□□□□□ -0.57
CIITA-207ENST00000571545 MFSD6Q6ZSS7 791 aa11.49□□□□□ -0.57
CIITA-207ENST00000571545 NUP133Q8WUM0 1156 aa11.49□□□□□ -0.57
CIITA-207ENST00000571545 ESR2Q92731 530 aa11.49□□□□□ -0.57
CIITA-207ENST00000571545 FAM227BQ96M60 508 aa11.49□□□□□ -0.57
CIITA-207ENST00000571545 TTC14Q96N46 770 aa11.49□□□□□ -0.57
CIITA-207ENST00000571545 ZHX1Q9UKY1 873 aaPredicted RBP11.49□□□□□ -0.57
CIITA-207ENST00000571545 PHF24Q9UPV7 400 aa11.49□□□□□ -0.57
CIITA-207ENST00000571545 LTBP2Q14767 1821 aa11.49□□□□□ -0.57
CIITA-207ENST00000571545 SMCHD1A6NHR9 2005 aa11.48□□□□□ -0.57
CIITA-207ENST00000571545 MOXD2PA6NHM9 499 aa11.48□□□□□ -0.57
CIITA-207ENST00000571545 ASB14A6NK59 587 aa11.48□□□□□ -0.57
CIITA-207ENST00000571545 DUSP11O75319 330 aaKnown RBP11.48□□□□□ -0.57
CIITA-207ENST00000571545 ZNF865P0CJ78 1059 aaPredicted RBP11.48□□□□□ -0.57
CIITA-207ENST00000571545 SDSP20132 328 aa11.48□□□□□ -0.57
CIITA-207ENST00000571545 ATN1P54259 1190 aaPredicted RBP11.48□□□□□ -0.57
CIITA-207ENST00000571545 NMIQ13287 307 aaPredicted RBP11.48□□□□□ -0.57
CIITA-207ENST00000571545 CCDC96Q2M329 555 aa11.48□□□□□ -0.57
CIITA-207ENST00000571545 RRP12Q5JTH9 1297 aaKnown RBP11.48□□□□□ -0.57
CIITA-207ENST00000571545 AKNAD1Q5T1N1 836 aa11.48□□□□□ -0.57
CIITA-207ENST00000571545 VPS53Q5VIR6 699 aa11.48□□□□□ -0.57
CIITA-207ENST00000571545 B4GALNT3Q6L9W6 998 aa11.48□□□□□ -0.57
CIITA-207ENST00000571545 PCSK9Q8NBP7 692 aaKnown RBP11.48□□□□□ -0.57
CIITA-207ENST00000571545 RNF146Q9NTX7 359 aa11.48□□□□□ -0.57
CIITA-207ENST00000571545 ATP11BQ9Y2G3 1177 aa11.48□□□□□ -0.57
CIITA-207ENST00000571545 RIPK3Q9Y572 518 aa11.48□□□□□ -0.57
CIITA-207ENST00000571545 MCM3APO60318 1980 aa11.47□□□□□ -0.57
CIITA-207ENST00000571545 MROH7Q68CQ1 1323 aa11.47□□□□□ -0.57
CIITA-207ENST00000571545 LOC102724159A0A0B4J2E5 919 aa11.47□□□□□ -0.57
CIITA-207ENST00000571545 POTEB2H3BUK9 544 aa11.47□□□□□ -0.57
CIITA-207ENST00000571545 ZNF213O14771 459 aa11.47□□□□□ -0.57
CIITA-207ENST00000571545 CST5P28325 142 aaPredicted RBP11.47□□□□□ -0.57
CIITA-207ENST00000571545 ACVR2BQ13705 512 aa11.47□□□□□ -0.57
CIITA-207ENST00000571545 PWP2Q15269 919 aaKnown RBP11.47□□□□□ -0.57
CIITA-207ENST00000571545 PRAMEF19Q5SWL8 479 aa11.47□□□□□ -0.57
CIITA-207ENST00000571545 ANO1Q5XXA6 986 aa11.47□□□□□ -0.57
CIITA-207ENST00000571545 ARMCX2Q7L311 632 aa11.47□□□□□ -0.57
CIITA-207ENST00000571545 IQCA1Q86XH1 822 aa11.47□□□□□ -0.57
CIITA-207ENST00000571545 PLEKHM2Q8IWE5 1019 aa11.47□□□□□ -0.57
CIITA-207ENST00000571545 MPHOSPH6Q99547 160 aaKnown RBP11.47□□□□□ -0.57
CIITA-207ENST00000571545 IL17RBQ9NRM6 502 aa11.47□□□□□ -0.57
CIITA-207ENST00000571545 HOMER2Q9NSB8 354 aa11.47□□□□□ -0.57
CIITA-207ENST00000571545 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.47□□□□□ -0.57
CIITA-207ENST00000571545 CTNNA3Q9UI47 895 aa11.47□□□□□ -0.57
CIITA-207ENST00000571545 CCPG1Q9ULG6 757 aa11.47□□□□□ -0.57
CIITA-207ENST00000571545 PRR12Q9ULL5 1215 aa11.47□□□□□ -0.57
CIITA-207ENST00000571545 SYNRGQ9UMZ2 1314 aa11.46□□□□□ -0.57
CIITA-207ENST00000571545 A0A1W2PQ45 241 aaPredicted RBP11.46□□□□□ -0.57
CIITA-207ENST00000571545 A0A1W2PQY0 241 aa11.46□□□□□ -0.57
CIITA-207ENST00000571545 ICAM1P05362 532 aa11.46□□□□□ -0.57
CIITA-207ENST00000571545 ALAS1P13196 640 aa11.46□□□□□ -0.57
CIITA-207ENST00000571545 ADCYAP1R1P41586 468 aa11.46□□□□□ -0.57
CIITA-207ENST00000571545 GPATCH4Q5T3I0 446 aaKnown RBP11.46□□□□□ -0.57
CIITA-207ENST00000571545 BTNL9Q6UXG8 535 aa11.46□□□□□ -0.57
CIITA-207ENST00000571545 KCTD1Q719H9 257 aa11.46□□□□□ -0.57
CIITA-207ENST00000571545 ZNF589Q86UQ0 364 aaPredicted RBP11.46□□□□□ -0.57
CIITA-207ENST00000571545 TRERF1Q96PN7 1200 aa11.46□□□□□ -0.57
CIITA-207ENST00000571545 DSCC1Q9BVC3 393 aa11.46□□□□□ -0.57
CIITA-207ENST00000571545 A1CFQ9NQ94 594 aaKnown RBP11.46□□□□□ -0.57
CIITA-207ENST00000571545 ZNF536O15090 1300 aa11.45□□□□□ -0.58
CIITA-207ENST00000571545 ELP1O95163 1332 aa11.45□□□□□ -0.58
CIITA-207ENST00000571545 RAD50Q92878 1312 aa11.45□□□□□ -0.58
CIITA-207ENST00000571545 B4DLN1 442 aa11.45□□□□□ -0.58
CIITA-207ENST00000571545 NMT2O60551 498 aa11.45□□□□□ -0.58
CIITA-207ENST00000571545 ADAMTS4O75173 837 aa11.45□□□□□ -0.58
CIITA-207ENST00000571545 SNAI1O95863 264 aaPredicted RBP11.45□□□□□ -0.58
CIITA-207ENST00000571545 PGK1P00558 417 aa11.45□□□□□ -0.58
CIITA-207ENST00000571545 MRPL12P52815 198 aaKnown RBP11.45□□□□□ -0.58
CIITA-207ENST00000571545 MDM2Q00987 491 aaPredicted RBP11.45□□□□□ -0.58
CIITA-207ENST00000571545 IMMTQ16891 758 aaKnown RBP11.45□□□□□ -0.58
CIITA-207ENST00000571545 TRIM60Q495X7 471 aa11.45□□□□□ -0.58
CIITA-207ENST00000571545 SYDE2Q5VT97 1194 aa11.45□□□□□ -0.58
CIITA-207ENST00000571545 CWC27Q6UX04 472 aaKnown RBP11.45□□□□□ -0.58
CIITA-207ENST00000571545 DGKHQ86XP1 1220 aa11.45□□□□□ -0.58
CIITA-207ENST00000571545 CCDC144CPQ8IYA2 1237 aa11.45□□□□□ -0.58
CIITA-207ENST00000571545 FAM133AQ8N9E0 248 aa11.45□□□□□ -0.58
CIITA-207ENST00000571545 EXOC6Q8TAG9 804 aa11.45□□□□□ -0.58
CIITA-207ENST00000571545 AGBL1Q96MI9 1066 aa11.45□□□□□ -0.58
CIITA-207ENST00000571545 GLT1D1Q96MS3 346 aa11.45□□□□□ -0.58
CIITA-207ENST00000571545 TOX2Q96NM4 488 aa11.45□□□□□ -0.58
CIITA-207ENST00000571545 TMEM47Q9BQJ4 181 aa11.45□□□□□ -0.58
CIITA-207ENST00000571545 SEZ6LQ9BYH1 1024 aa11.45□□□□□ -0.58
CIITA-207ENST00000571545 MAF1Q9H063 256 aa11.45□□□□□ -0.58
CIITA-207ENST00000571545 RANBP17Q9H2T7 1088 aaKnown RBP11.45□□□□□ -0.58
CIITA-207ENST00000571545 CNNM2Q9H8M5 875 aa11.45□□□□□ -0.58
CIITA-207ENST00000571545 PRDM5Q9NQX1 630 aaPredicted RBP11.45□□□□□ -0.58
CIITA-207ENST00000571545 STARD7Q9NQZ5 370 aa11.45□□□□□ -0.58
CIITA-207ENST00000571545 ADD3Q9UEY8 706 aaKnown RBP11.45□□□□□ -0.58
CIITA-207ENST00000571545 TACC3Q9Y6A5 838 aa11.45□□□□□ -0.58
CIITA-207ENST00000571545 LRRC37A2A6NM11 1700 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms