RNA–Protein interactions for RNA: ENST00000569117.1

CDH3-210, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 576 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-210ENST00000569117 LZTS2Q9BRK4 669 aa12.13□□□□□ -0.47
CDH3-210ENST00000569117 LLPHQ9BRT6 129 aaKnown RBP12.13□□□□□ -0.47
CDH3-210ENST00000569117 TMUB1Q9BVT8 246 aa12.13□□□□□ -0.47
CDH3-210ENST00000569117 SPZ1Q9BXG8 430 aa12.13□□□□□ -0.47
CDH3-210ENST00000569117 AGTPBP1Q9UPW5 1226 aa12.13□□□□□ -0.47
CDH3-210ENST00000569117 STK36Q9NRP7 1315 aa12.12□□□□□ -0.47
CDH3-210ENST00000569117 CPLX1O14810 134 aa12.12□□□□□ -0.47
CDH3-210ENST00000569117 CDKL5O76039 1030 aa12.12□□□□□ -0.47
CDH3-210ENST00000569117 CETPP11597 493 aa12.12□□□□□ -0.47
CDH3-210ENST00000569117 IFNAR1P17181 557 aa12.12□□□□□ -0.47
CDH3-210ENST00000569117 CLCN1P35523 988 aa12.12□□□□□ -0.47
CDH3-210ENST00000569117 ATN1P54259 1190 aaPredicted RBP12.12□□□□□ -0.47
CDH3-210ENST00000569117 FUT2Q10981 343 aa12.12□□□□□ -0.47
CDH3-210ENST00000569117 FASTKD5Q7L8L6 764 aaKnown RBP12.12□□□□□ -0.47
CDH3-210ENST00000569117 FAM160B2Q86V87 743 aa12.12□□□□□ -0.47
CDH3-210ENST00000569117 NSUN7Q8NE18 718 aaKnown RBP12.12□□□□□ -0.47
CDH3-210ENST00000569117 INTS4Q96HW7 963 aaKnown RBP12.12□□□□□ -0.47
CDH3-210ENST00000569117 TANGO6Q9C0B7 1094 aa12.12□□□□□ -0.47
CDH3-210ENST00000569117 RPAP3Q9H6T3 665 aaPredicted RBP12.12□□□□□ -0.47
CDH3-210ENST00000569117 GPCPD1Q9NPB8 672 aa12.12□□□□□ -0.47
CDH3-210ENST00000569117 FEM1BQ9UK73 627 aa12.12□□□□□ -0.47
CDH3-210ENST00000569117 MYPNQ86TC9 1320 aa12.11□□□□□ -0.47
CDH3-210ENST00000569117 BAZ2BQ9UIF8 2168 aaKnown RBP12.11□□□□□ -0.47
CDH3-210ENST00000569117 CCL15-CCL14A0A0B4J2E2 113 aa12.11□□□□□ -0.47
CDH3-210ENST00000569117 PTPDC1A2A3K4 754 aa12.11□□□□□ -0.47
CDH3-210ENST00000569117 MANSC4A6NHS7 340 aaPredicted RBP12.11□□□□□ -0.47
CDH3-210ENST00000569117 TMEM232C9JQI7 657 aa12.11□□□□□ -0.47
CDH3-210ENST00000569117 CYTH3O43739 400 aa12.11□□□□□ -0.47
CDH3-210ENST00000569117 CTDNEP1O95476 244 aa12.11□□□□□ -0.47
CDH3-210ENST00000569117 CCL15Q16663 113 aa12.11□□□□□ -0.47
CDH3-210ENST00000569117 SLC35G1Q2M3R5 365 aa12.11□□□□□ -0.47
CDH3-210ENST00000569117 TREML2Q5T2D2 321 aa12.11□□□□□ -0.47
CDH3-210ENST00000569117 TMEM92Q6UXU6 159 aa12.11□□□□□ -0.47
CDH3-210ENST00000569117 GADL1Q6ZQY3 521 aa12.11□□□□□ -0.47
CDH3-210ENST00000569117 NBPF11Q86T75 865 aa12.11□□□□□ -0.47
CDH3-210ENST00000569117 SRBD1Q8N5C6 995 aaKnown RBP12.11□□□□□ -0.47
CDH3-210ENST00000569117 SMARCC2Q8TAQ2 1214 aa12.11□□□□□ -0.47
CDH3-210ENST00000569117 BRI3BPQ8WY22 251 aa12.11□□□□□ -0.47
CDH3-210ENST00000569117 RNF26Q9BY78 433 aaPredicted RBP12.11□□□□□ -0.47
CDH3-210ENST00000569117 RIOX1Q9H6W3 641 aa12.11□□□□□ -0.47
CDH3-210ENST00000569117 RBM27Q9P2N5 1060 aaKnown RBP12.11□□□□□ -0.47
CDH3-210ENST00000569117 ISY1Q9ULR0 285 aaKnown RBP12.11□□□□□ -0.47
CDH3-210ENST00000569117 SLC45A1Q9Y2W3 748 aa12.11□□□□□ -0.47
CDH3-210ENST00000569117 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.11□□□□□ -0.47
CDH3-210ENST00000569117 USP17L15C9J2P7 530 aa12.1□□□□□ -0.47
CDH3-210ENST00000569117 USP17L13C9JLJ4 530 aa12.1□□□□□ -0.47
CDH3-210ENST00000569117 USP17L11C9JVI0 530 aa12.1□□□□□ -0.47
CDH3-210ENST00000569117 USP17L18D6R9N7 530 aa12.1□□□□□ -0.47
CDH3-210ENST00000569117 USP17L22D6RA61 530 aa12.1□□□□□ -0.47
CDH3-210ENST00000569117 USP17L17D6RBQ6 530 aa12.1□□□□□ -0.47
CDH3-210ENST00000569117 USP17L19D6RCP7 530 aa12.1□□□□□ -0.47
CDH3-210ENST00000569117 USP17L20D6RJB6 530 aa12.1□□□□□ -0.47
CDH3-210ENST00000569117 FMNL1O95466 1100 aaPredicted RBP12.1□□□□□ -0.47
CDH3-210ENST00000569117 HOXA7P31268 230 aaPredicted RBP12.1□□□□□ -0.47
CDH3-210ENST00000569117 USP17L24Q0WX57 530 aa12.1□□□□□ -0.47
CDH3-210ENST00000569117 IKQ13123 557 aaPredicted RBP12.1□□□□□ -0.47
CDH3-210ENST00000569117 PABPC4Q13310 644 aaKnown RBP eCLIP12.1□□□□□ -0.47
CDH3-210ENST00000569117 SKIV2LQ15477 1246 aaKnown RBP12.1□□□□□ -0.47
CDH3-210ENST00000569117 SYDE2Q5VT97 1194 aa12.1□□□□□ -0.47
CDH3-210ENST00000569117 TTBK2Q6IQ55 1244 aa12.1□□□□□ -0.47
CDH3-210ENST00000569117 GPAT2Q6NUI2 795 aa12.1□□□□□ -0.47
CDH3-210ENST00000569117 CATSPERGQ6ZRH7 1159 aa12.1□□□□□ -0.47
CDH3-210ENST00000569117 ANKRD23Q86SG2 305 aa12.1□□□□□ -0.47
CDH3-210ENST00000569117 CMTR1Q8N1G2 835 aaKnown RBP12.1□□□□□ -0.47
CDH3-210ENST00000569117 CHURC1Q8WUH1 139 aa12.1□□□□□ -0.47
CDH3-210ENST00000569117 MTMR8Q96EF0 704 aa12.1□□□□□ -0.47
CDH3-210ENST00000569117 SLF1Q9BQI6 1058 aa12.1□□□□□ -0.47
CDH3-210ENST00000569117 CPVLQ9H3G5 476 aa12.1□□□□□ -0.47
CDH3-210ENST00000569117 ZCCHC17Q9NP64 241 aaKnown RBP12.1□□□□□ -0.47
CDH3-210ENST00000569117 FBXO28Q9NVF7 368 aa12.1□□□□□ -0.47
CDH3-210ENST00000569117 PPP1R9AQ9ULJ8 1098 aa12.1□□□□□ -0.47
CDH3-210ENST00000569117 JAK2O60674 1132 aa12.09□□□□□ -0.47
CDH3-210ENST00000569117 FLOT1O75955 427 aa12.09□□□□□ -0.47
CDH3-210ENST00000569117 SLC16A2P36021 539 aa12.09□□□□□ -0.47
CDH3-210ENST00000569117 HMGN5P82970 282 aaKnown RBP12.09□□□□□ -0.47
CDH3-210ENST00000569117 MDM2Q00987 491 aaPredicted RBP12.09□□□□□ -0.47
CDH3-210ENST00000569117 SREBF2Q12772 1141 aa12.09□□□□□ -0.47
CDH3-210ENST00000569117 NOGQ13253 232 aa12.09□□□□□ -0.47
CDH3-210ENST00000569117 DEFB115Q30KQ5 88 aa12.09□□□□□ -0.47
CDH3-210ENST00000569117 IER5LQ5T953 404 aa12.09□□□□□ -0.47
CDH3-210ENST00000569117 CYP4F22Q6NT55 531 aa12.09□□□□□ -0.47
CDH3-210ENST00000569117 TRIM22Q8IYM9 498 aa12.09□□□□□ -0.47
CDH3-210ENST00000569117 ADGRF4Q8IZF3 695 aa12.09□□□□□ -0.47
CDH3-210ENST00000569117 PRPF38AQ8NAV1 312 aaKnown RBP12.09□□□□□ -0.47
CDH3-210ENST00000569117 PHKBQ93100 1093 aa12.09□□□□□ -0.47
CDH3-210ENST00000569117 CAPNS2Q96L46 248 aa12.09□□□□□ -0.47
CDH3-210ENST00000569117 UBA5Q9GZZ9 404 aa12.09□□□□□ -0.47
CDH3-210ENST00000569117 PNMA3Q9UL41 463 aa12.09□□□□□ -0.47
CDH3-210ENST00000569117 PRR12Q9ULL5 1215 aa12.09□□□□□ -0.47
CDH3-210ENST00000569117 BTBD19C9JJ37 291 aa12.08□□□□□ -0.48
CDH3-210ENST00000569117 DEXIO95424 95 aa12.08□□□□□ -0.48
CDH3-210ENST00000569117 HSP90AA1P07900 732 aaKnown RBP12.08□□□□□ -0.48
CDH3-210ENST00000569117 FDX1P10109 184 aa12.08□□□□□ -0.48
CDH3-210ENST00000569117 SSTR3P32745 418 aaPredicted RBP12.08□□□□□ -0.48
CDH3-210ENST00000569117 IRX3P78415 501 aaPredicted RBP12.08□□□□□ -0.48
CDH3-210ENST00000569117 SSRP1Q08945 709 aaKnown RBP12.08□□□□□ -0.48
CDH3-210ENST00000569117 CDC37Q16543 378 aaPredicted RBP12.08□□□□□ -0.48
CDH3-210ENST00000569117 LBX2Q6XYB7 198 aa12.08□□□□□ -0.48
CDH3-210ENST00000569117 KIFC2Q96AC6 838 aa12.08□□□□□ -0.48
CDH3-210ENST00000569117 RRP36Q96EU6 259 aaKnown RBP12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms