RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 GRM1Q13255 1194 aa9.82□□□□□ -0.84
SF3B3-212ENST00000568539 E2F4Q16254 413 aa9.82□□□□□ -0.84
SF3B3-212ENST00000568539 FAM160B2Q86V87 743 aa9.82□□□□□ -0.84
SF3B3-212ENST00000568539 CHURC1Q8WUH1 139 aa9.82□□□□□ -0.84
SF3B3-212ENST00000568539 ZIC5Q96T25 663 aa9.82□□□□□ -0.84
SF3B3-212ENST00000568539 SPZ1Q9BXG8 430 aa9.82□□□□□ -0.84
SF3B3-212ENST00000568539 RIOX1Q9H6W3 641 aa9.82□□□□□ -0.84
SF3B3-212ENST00000568539 PRDM10Q9NQV6 1147 aa9.82□□□□□ -0.84
SF3B3-212ENST00000568539 BMP2KQ9NSY1 1161 aaPredicted RBP9.82□□□□□ -0.84
SF3B3-212ENST00000568539 PPP1R9AQ9ULJ8 1098 aa9.82□□□□□ -0.84
SF3B3-212ENST00000568539 ISY1Q9ULR0 285 aaKnown RBP9.82□□□□□ -0.84
SF3B3-212ENST00000568539 SLC45A1Q9Y2W3 748 aa9.82□□□□□ -0.84
SF3B3-212ENST00000568539 MYH8P13535 1937 aa9.82□□□□□ -0.84
SF3B3-212ENST00000568539 MYPNQ86TC9 1320 aa9.82□□□□□ -0.84
SF3B3-212ENST00000568539 CNTNAP5Q8WYK1 1306 aa9.82□□□□□ -0.84
SF3B3-212ENST00000568539 CCDC85CA6NKD9 419 aa9.81□□□□□ -0.84
SF3B3-212ENST00000568539 PDHXO00330 501 aa9.81□□□□□ -0.84
SF3B3-212ENST00000568539 IGF2BP3O00425 579 aaKnown RBP eCLIP9.81□□□□□ -0.84
SF3B3-212ENST00000568539 CPLX1O14810 134 aa9.81□□□□□ -0.84
SF3B3-212ENST00000568539 AOC2O75106 756 aa9.81□□□□□ -0.84
SF3B3-212ENST00000568539 FLOT1O75955 427 aa9.81□□□□□ -0.84
SF3B3-212ENST00000568539 TM4SF4P48230 202 aa9.81□□□□□ -0.84
SF3B3-212ENST00000568539 VEGFBP49765 207 aa9.81□□□□□ -0.84
SF3B3-212ENST00000568539 SREBF2Q12772 1141 aa9.81□□□□□ -0.84
SF3B3-212ENST00000568539 IKQ13123 557 aaPredicted RBP9.81□□□□□ -0.84
SF3B3-212ENST00000568539 PABPC4Q13310 644 aaKnown RBP eCLIP9.81□□□□□ -0.84
SF3B3-212ENST00000568539 BECN1Q14457 450 aa9.81□□□□□ -0.84
SF3B3-212ENST00000568539 COG2Q14746 738 aa9.81□□□□□ -0.84
SF3B3-212ENST00000568539 SYDE2Q5VT97 1194 aa9.81□□□□□ -0.84
SF3B3-212ENST00000568539 CPLX2Q6PUV4 134 aaKnown RBP9.81□□□□□ -0.84
SF3B3-212ENST00000568539 ADGRF4Q8IZF3 695 aa9.81□□□□□ -0.84
SF3B3-212ENST00000568539 FAM43AQ8N2R8 423 aa9.81□□□□□ -0.84
SF3B3-212ENST00000568539 CCDC82Q8N4S0 544 aa9.81□□□□□ -0.84
SF3B3-212ENST00000568539 PRPF38AQ8NAV1 312 aaKnown RBP9.81□□□□□ -0.84
SF3B3-212ENST00000568539 NSUN7Q8NE18 718 aaKnown RBP9.81□□□□□ -0.84
SF3B3-212ENST00000568539 MTMR8Q96EF0 704 aa9.81□□□□□ -0.84
SF3B3-212ENST00000568539 SLF1Q9BQI6 1058 aa9.81□□□□□ -0.84
SF3B3-212ENST00000568539 LLPHQ9BRT6 129 aaKnown RBP9.81□□□□□ -0.84
SF3B3-212ENST00000568539 ASCC2Q9H1I8 757 aaPredicted RBP9.81□□□□□ -0.84
SF3B3-212ENST00000568539 JMJD4Q9H9V9 463 aa9.81□□□□□ -0.84
SF3B3-212ENST00000568539 PRR12Q9ULL5 1215 aa9.81□□□□□ -0.84
SF3B3-212ENST00000568539 ADAMTS5Q9UNA0 930 aa9.81□□□□□ -0.84
SF3B3-212ENST00000568539 WDR33Q9C0J8 1336 aaKnown RBP9.81□□□□□ -0.84
SF3B3-212ENST00000568539 PTPDC1A2A3K4 754 aa9.8□□□□□ -0.84
SF3B3-212ENST00000568539 SPDYE16A6NNV3 312 aaPredicted RBP9.8□□□□□ -0.84
SF3B3-212ENST00000568539 JAK2O60674 1132 aa9.8□□□□□ -0.84
SF3B3-212ENST00000568539 DTNBO60941 627 aa9.8□□□□□ -0.84
SF3B3-212ENST00000568539 PPFIA3O75145 1194 aa9.8□□□□□ -0.84
SF3B3-212ENST00000568539 CDKL5O76039 1030 aa9.8□□□□□ -0.84
SF3B3-212ENST00000568539 FMNL1O95466 1100 aaPredicted RBP9.8□□□□□ -0.84
SF3B3-212ENST00000568539 OSBPP22059 807 aa9.8□□□□□ -0.84
SF3B3-212ENST00000568539 IRX3P78415 501 aaPredicted RBP9.8□□□□□ -0.84
SF3B3-212ENST00000568539 POTEEQ6S8J3 1075 aa9.8□□□□□ -0.84
SF3B3-212ENST00000568539 LBX2Q6XYB7 198 aa9.8□□□□□ -0.84
SF3B3-212ENST00000568539 SMARCC2Q8TAQ2 1214 aa9.8□□□□□ -0.84
SF3B3-212ENST00000568539 PHKBQ93100 1093 aa9.8□□□□□ -0.84
SF3B3-212ENST00000568539 KIFC2Q96AC6 838 aa9.8□□□□□ -0.84
SF3B3-212ENST00000568539 ATG4CQ96DT6 458 aa9.8□□□□□ -0.84
SF3B3-212ENST00000568539 INTS4Q96HW7 963 aaKnown RBP9.8□□□□□ -0.84
SF3B3-212ENST00000568539 RNF26Q9BY78 433 aaPredicted RBP9.8□□□□□ -0.84
SF3B3-212ENST00000568539 RANBP17Q9H2T7 1088 aaKnown RBP9.8□□□□□ -0.84
SF3B3-212ENST00000568539 VAT1LQ9HCJ6 419 aa9.8□□□□□ -0.84
SF3B3-212ENST00000568539 ZCCHC17Q9NP64 241 aaKnown RBP9.8□□□□□ -0.84
SF3B3-212ENST00000568539 HOXC10Q9NYD6 342 aa9.8□□□□□ -0.84
SF3B3-212ENST00000568539 ARIH1Q9Y4X5 557 aaPredicted RBP9.8□□□□□ -0.84
SF3B3-212ENST00000568539 V9GY48 417 aaPredicted RBP9.8□□□□□ -0.84
SF3B3-212ENST00000568539 LOC285556D6RIA3 1793 aa9.8□□□□□ -0.84
SF3B3-212ENST00000568539 STK36Q9NRP7 1315 aa9.8□□□□□ -0.84
SF3B3-212ENST00000568539 VWA5AO00534 786 aa9.79□□□□□ -0.84
SF3B3-212ENST00000568539 ZBTB5O15062 677 aa9.79□□□□□ -0.84
SF3B3-212ENST00000568539 PRPF3O43395 683 aaKnown RBP9.79□□□□□ -0.84
SF3B3-212ENST00000568539 FDX1P10109 184 aa9.79□□□□□ -0.84
SF3B3-212ENST00000568539 CYP2C8P10632 490 aa9.79□□□□□ -0.84
SF3B3-212ENST00000568539 HSPA8P11142 646 aaKnown RBP9.79□□□□□ -0.84
SF3B3-212ENST00000568539 FDPSP14324 419 aaKnown RBP9.79□□□□□ -0.84
SF3B3-212ENST00000568539 MAP2K2P36507 400 aa9.79□□□□□ -0.84
SF3B3-212ENST00000568539 CTCFP49711 727 aaPredicted RBP9.79□□□□□ -0.84
SF3B3-212ENST00000568539 SNAP25P60880 206 aa9.79□□□□□ -0.84
SF3B3-212ENST00000568539 HERVK_113P62684 666 aa9.79□□□□□ -0.84
SF3B3-212ENST00000568539 SSRP1Q08945 709 aaKnown RBP9.79□□□□□ -0.84
SF3B3-212ENST00000568539 PKN1Q16512 942 aa9.79□□□□□ -0.84
SF3B3-212ENST00000568539 CDC37Q16543 378 aaPredicted RBP9.79□□□□□ -0.84
SF3B3-212ENST00000568539 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.79□□□□□ -0.84
SF3B3-212ENST00000568539 TRIM22Q8IYM9 498 aa9.79□□□□□ -0.84
SF3B3-212ENST00000568539 REPS2Q8NFH8 660 aa9.79□□□□□ -0.84
SF3B3-212ENST00000568539 RRP36Q96EU6 259 aaKnown RBP9.79□□□□□ -0.84
SF3B3-212ENST00000568539 PIGSQ96S52 555 aa9.79□□□□□ -0.84
SF3B3-212ENST00000568539 P2RX7Q99572 595 aaKnown RBP9.79□□□□□ -0.84
SF3B3-212ENST00000568539 SLC26A6Q9BXS9 759 aa9.79□□□□□ -0.84
SF3B3-212ENST00000568539 SLC38A10Q9HBR0 1119 aa9.79□□□□□ -0.84
SF3B3-212ENST00000568539 PNMA3Q9UL41 463 aa9.79□□□□□ -0.84
SF3B3-212ENST00000568539 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.79□□□□□ -0.84
SF3B3-212ENST00000568539 PNMA6FA0A0J9YX94 578 aa9.78□□□□□ -0.84
SF3B3-212ENST00000568539 hCG_1642624A0A1W2PR95 340 aa9.78□□□□□ -0.84
SF3B3-212ENST00000568539 GALR2O43603 387 aaPredicted RBP9.78□□□□□ -0.84
SF3B3-212ENST00000568539 PPP1R11O60927 126 aaPredicted RBP9.78□□□□□ -0.84
SF3B3-212ENST00000568539 DEXIO95424 95 aa9.78□□□□□ -0.84
SF3B3-212ENST00000568539 CLCN6P51797 869 aa9.78□□□□□ -0.84
SF3B3-212ENST00000568539 HMGN5P82970 282 aaKnown RBP9.78□□□□□ -0.84
SF3B3-212ENST00000568539 PFKFB3Q16875 520 aaPredicted RBP9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms