RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 PDIA4P13667 645 aaKnown RBP4.93□□□□□ -1.62
VPS13C-205ENST00000558088 NR1I3Q14994 352 aa4.93□□□□□ -1.62
VPS13C-205ENST00000558088 VMACQ2NL98 169 aa4.93□□□□□ -1.62
VPS13C-205ENST00000558088 SLCO6A1Q86UG4 719 aa4.93□□□□□ -1.62
VPS13C-205ENST00000558088 FAM129CQ86XR2 697 aa4.93□□□□□ -1.62
VPS13C-205ENST00000558088 ZDHHC14Q8IZN3 488 aa4.93□□□□□ -1.62
VPS13C-205ENST00000558088 FEZF2Q8TBJ5 459 aa4.93□□□□□ -1.62
VPS13C-205ENST00000558088 TEPSINQ96N21 525 aa4.93□□□□□ -1.62
VPS13C-205ENST00000558088 SLC6A18Q96N87 628 aa4.93□□□□□ -1.62
VPS13C-205ENST00000558088 COPRSQ9NQ92 184 aa4.93□□□□□ -1.62
VPS13C-205ENST00000558088 PRR13Q9NZ81 148 aa4.93□□□□□ -1.62
VPS13C-205ENST00000558088 ZC3H12DA2A288 527 aaKnown RBP4.92□□□□□ -1.62
VPS13C-205ENST00000558088 BUB1BO60566 1050 aaPredicted RBP4.92□□□□□ -1.62
VPS13C-205ENST00000558088 GSNP06396 782 aa4.92□□□□□ -1.62
VPS13C-205ENST00000558088 VAV1P15498 845 aa4.92□□□□□ -1.62
VPS13C-205ENST00000558088 NME1P15531 152 aaKnown RBP4.92□□□□□ -1.62
VPS13C-205ENST00000558088 AUHQ13825 339 aaKnown RBP4.92□□□□□ -1.62
VPS13C-205ENST00000558088 TARBP2Q15633 366 aaKnown RBP4.92□□□□□ -1.62
VPS13C-205ENST00000558088 ZC3H14Q6PJT7 736 aaKnown RBP4.92□□□□□ -1.62
VPS13C-205ENST00000558088 IGDCC3Q8IVU1 814 aa4.92□□□□□ -1.62
VPS13C-205ENST00000558088 LINC01356Q8N9X3 169 aa4.92□□□□□ -1.62
VPS13C-205ENST00000558088 TNFRSF12AQ9NP84 129 aa4.92□□□□□ -1.62
VPS13C-205ENST00000558088 AP5S1Q9NUS5 200 aa4.92□□□□□ -1.62
VPS13C-205ENST00000558088 IMPACTQ9P2X3 320 aa4.92□□□□□ -1.62
VPS13C-205ENST00000558088 ACSL6Q9UKU0 697 aa4.92□□□□□ -1.62
VPS13C-205ENST00000558088 MINPP1Q9UNW1 487 aa4.92□□□□□ -1.62
VPS13C-205ENST00000558088 CRKP46108 304 aa4.91□□□□□ -1.62
VPS13C-205ENST00000558088 MAPKAPK2P49137 400 aa4.91□□□□□ -1.62
VPS13C-205ENST00000558088 KIR3DS1Q14943 382 aa4.91□□□□□ -1.62
VPS13C-205ENST00000558088 PLEKHN1Q494U1 663 aaPredicted RBP4.91□□□□□ -1.62
VPS13C-205ENST00000558088 HLA-DQA1Q5Y7H0 255 aa4.91□□□□□ -1.62
VPS13C-205ENST00000558088 CRTC3Q6UUV7 619 aa4.91□□□□□ -1.62
VPS13C-205ENST00000558088 RPTNQ6XPR3 784 aa4.91□□□□□ -1.62
VPS13C-205ENST00000558088 CCDC144CPQ8IYA2 1237 aa4.91□□□□□ -1.62
VPS13C-205ENST00000558088 TMEFF1Q8IYR6 380 aa4.91□□□□□ -1.62
VPS13C-205ENST00000558088 RGS22Q8NE09 1264 aa4.91□□□□□ -1.62
VPS13C-205ENST00000558088 EPB41L4AQ9HCS5 686 aaPredicted RBP4.91□□□□□ -1.62
VPS13C-205ENST00000558088 UBP1Q9NZI7 540 aa4.91□□□□□ -1.62
VPS13C-205ENST00000558088 JAG2Q9Y219 1238 aa4.91□□□□□ -1.62
VPS13C-205ENST00000558088 PCDHA5Q9Y5H7 936 aa4.91□□□□□ -1.62
VPS13C-205ENST00000558088 MEIS3P2A8K0S8 358 aa4.9□□□□□ -1.63
VPS13C-205ENST00000558088 TNFRSF10CO14798 259 aa4.9□□□□□ -1.63
VPS13C-205ENST00000558088 GSTM1P09488 218 aa4.9□□□□□ -1.63
VPS13C-205ENST00000558088 CTSKP43235 329 aa4.9□□□□□ -1.63
VPS13C-205ENST00000558088 NCKAP1LP55160 1127 aa4.9□□□□□ -1.63
VPS13C-205ENST00000558088 CLCQ05315 142 aa4.9□□□□□ -1.63
VPS13C-205ENST00000558088 CBX2Q14781 532 aaPredicted RBP4.9□□□□□ -1.63
VPS13C-205ENST00000558088 CCDC27Q2M243 656 aa4.9□□□□□ -1.63
VPS13C-205ENST00000558088 SKOR2Q2VWA4 1001 aaPredicted RBP4.9□□□□□ -1.63
VPS13C-205ENST00000558088 ZNF326Q5BKZ1 582 aaKnown RBP4.9□□□□□ -1.63
VPS13C-205ENST00000558088 NOL9Q5SY16 702 aaKnown RBP4.9□□□□□ -1.63
VPS13C-205ENST00000558088 CYP2R1Q6VVX0 501 aa4.9□□□□□ -1.63
VPS13C-205ENST00000558088 FRMD5Q7Z6J6 570 aa4.9□□□□□ -1.63
VPS13C-205ENST00000558088 TMEM192Q8IY95 271 aa4.9□□□□□ -1.63
VPS13C-205ENST00000558088 NKD1Q969G9 470 aa4.9□□□□□ -1.63
VPS13C-205ENST00000558088 FAN1Q9Y2M0 1017 aa4.9□□□□□ -1.63
VPS13C-205ENST00000558088 CYBBP04839 570 aa4.89□□□□□ -1.63
VPS13C-205ENST00000558088 ADRB1P08588 477 aa4.89□□□□□ -1.63
VPS13C-205ENST00000558088 IMPDH2P12268 514 aa4.89□□□□□ -1.63
VPS13C-205ENST00000558088 NOP2P46087 812 aaKnown RBP4.89□□□□□ -1.63
VPS13C-205ENST00000558088 KCNC1P48547 511 aa4.89□□□□□ -1.63
VPS13C-205ENST00000558088 ZNF200P98182 395 aaPredicted RBP4.89□□□□□ -1.63
VPS13C-205ENST00000558088 TAGLNQ01995 201 aaKnown RBP4.89□□□□□ -1.63
VPS13C-205ENST00000558088 BICRALQ6AI39 1079 aa4.89□□□□□ -1.63
VPS13C-205ENST00000558088 C7orf61Q8IZ16 206 aa4.89□□□□□ -1.63
VPS13C-205ENST00000558088 SYT8Q8NBV8 401 aa4.89□□□□□ -1.63
VPS13C-205ENST00000558088 SMARCC1Q92922 1105 aaPredicted RBP4.89□□□□□ -1.63
VPS13C-205ENST00000558088 JMJD8Q96S16 334 aa4.89□□□□□ -1.63
VPS13C-205ENST00000558088 ANTXR1Q9H6X2 564 aa4.89□□□□□ -1.63
VPS13C-205ENST00000558088 SUCOQ9UBS9 1254 aaKnown RBP4.89□□□□□ -1.63
VPS13C-205ENST00000558088 DBR1Q9UK59 544 aaKnown RBP4.89□□□□□ -1.63
VPS13C-205ENST00000558088 CAP1Q01518 475 aa4.88□□□□□ -1.63
VPS13C-205ENST00000558088 PLP2Q04941 152 aa4.88□□□□□ -1.63
VPS13C-205ENST00000558088 SPATS1Q496A3 300 aa4.88□□□□□ -1.63
VPS13C-205ENST00000558088 PAQR3Q6TCH7 311 aa4.88□□□□□ -1.63
VPS13C-205ENST00000558088 SLC9A7Q96T83 725 aa4.88□□□□□ -1.63
VPS13C-205ENST00000558088 NT5C1AQ9BXI3 368 aa4.88□□□□□ -1.63
VPS13C-205ENST00000558088 ADAM7Q9H2U9 754 aa4.88□□□□□ -1.63
VPS13C-205ENST00000558088 USP40Q9NVE5 1235 aa4.88□□□□□ -1.63
VPS13C-205ENST00000558088 ADAMTS1Q9UHI8 967 aa4.88□□□□□ -1.63
VPS13C-205ENST00000558088 FAM86C2PA6NEL3 165 aa4.87□□□□□ -1.63
VPS13C-205ENST00000558088 LIMS1P48059 325 aa4.87□□□□□ -1.63
VPS13C-205ENST00000558088 MVKQ03426 396 aa4.87□□□□□ -1.63
VPS13C-205ENST00000558088 RTP2Q5QGT7 225 aa4.87□□□□□ -1.63
VPS13C-205ENST00000558088 INTS3Q68E01 1043 aaKnown RBP4.87□□□□□ -1.63
VPS13C-205ENST00000558088 USP48Q86UV5 1035 aa4.87□□□□□ -1.63
VPS13C-205ENST00000558088 CABP7Q86V35 215 aa4.87□□□□□ -1.63
VPS13C-205ENST00000558088 KIAA0825Q8IV33 1275 aa4.87□□□□□ -1.63
VPS13C-205ENST00000558088 SLITRK4Q8IW52 837 aa4.87□□□□□ -1.63
VPS13C-205ENST00000558088 SPON2Q9BUD6 331 aa4.87□□□□□ -1.63
VPS13C-205ENST00000558088 BDH2Q9BUT1 245 aa4.87□□□□□ -1.63
VPS13C-205ENST00000558088 BCL2L13Q9BXK5 485 aa4.87□□□□□ -1.63
VPS13C-205ENST00000558088 PDLIM7Q9NR12 457 aa4.87□□□□□ -1.63
VPS13C-205ENST00000558088 SRGAP3O43295 1099 aa4.86□□□□□ -1.63
VPS13C-205ENST00000558088 TBC1D8O95759 1140 aa4.86□□□□□ -1.63
VPS13C-205ENST00000558088 MSL3P1P0C860 447 aa4.86□□□□□ -1.63
VPS13C-205ENST00000558088 IGFBP6P24592 240 aaPredicted RBP4.86□□□□□ -1.63
VPS13C-205ENST00000558088 PMS1P54277 932 aaKnown RBP4.86□□□□□ -1.63
VPS13C-205ENST00000558088 CORO7P57737 925 aa4.86□□□□□ -1.63
VPS13C-205ENST00000558088 RBM10P98175 930 aaKnown RBP4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms