RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 KLRF2D3W0D1 207 aa14.49□□□□□ -0.09
LDLR-207ENST00000558013 SRGAP2O75044 1071 aa14.49□□□□□ -0.09
LDLR-207ENST00000558013 TPM1P09493 284 aa14.49□□□□□ -0.09
LDLR-207ENST00000558013 PLCG1P19174 1290 aa14.49□□□□□ -0.09
LDLR-207ENST00000558013 RASA1P20936 1047 aa14.49□□□□□ -0.09
LDLR-207ENST00000558013 PIP4K2BP78356 416 aa14.49□□□□□ -0.09
LDLR-207ENST00000558013 STK4Q13043 487 aa14.49□□□□□ -0.09
LDLR-207ENST00000558013 WDR59Q6PJI9 974 aa14.49□□□□□ -0.09
LDLR-207ENST00000558013 CYP26C1Q6V0L0 522 aa14.49□□□□□ -0.09
LDLR-207ENST00000558013 ZNF444Q8N0Y2 327 aaPredicted RBP14.49□□□□□ -0.09
LDLR-207ENST00000558013 TRIM47Q96LD4 638 aa14.49□□□□□ -0.09
LDLR-207ENST00000558013 UBA5Q9GZZ9 404 aa14.49□□□□□ -0.09
LDLR-207ENST00000558013 LAMB2P55268 1798 aa14.49□□□□□ -0.09
LDLR-207ENST00000558013 CCNT1O60563 726 aaKnown RBP14.49□□□□□ -0.09
LDLR-207ENST00000558013 FECHP22830 423 aa14.49□□□□□ -0.09
LDLR-207ENST00000558013 MB21D1Q8N884 522 aa14.49□□□□□ -0.09
LDLR-207ENST00000558013 UIMC1Q96RL1 719 aa14.49□□□□□ -0.09
LDLR-207ENST00000558013 HINFPQ9BQA5 517 aa14.49□□□□□ -0.09
LDLR-207ENST00000558013 UBXN6Q9BZV1 441 aa14.49□□□□□ -0.09
LDLR-207ENST00000558013 BARHL2Q9NY43 387 aa14.49□□□□□ -0.09
LDLR-207ENST00000558013 EPN1Q9Y6I3 576 aaPredicted RBP14.49□□□□□ -0.09
LDLR-207ENST00000558013 DUSP10Q9Y6W6 482 aa14.49□□□□□ -0.09
LDLR-207ENST00000558013 RCCD1A6NED2 376 aa14.48□□□□□ -0.09
LDLR-207ENST00000558013 RASSF10A6NK89 507 aa14.48□□□□□ -0.09
LDLR-207ENST00000558013 N4BP1O75113 896 aaKnown RBP14.48□□□□□ -0.09
LDLR-207ENST00000558013 NDUFA10O95299 355 aa14.48□□□□□ -0.09
LDLR-207ENST00000558013 TECP42680 631 aa14.48□□□□□ -0.09
LDLR-207ENST00000558013 CCDC178Q5BJE1 867 aa14.48□□□□□ -0.09
LDLR-207ENST00000558013 CLEC10AQ8IUN9 316 aa14.48□□□□□ -0.09
LDLR-207ENST00000558013 DUSP9Q99956 384 aaKnown RBP14.48□□□□□ -0.09
LDLR-207ENST00000558013 TMEM260Q9NX78 707 aa14.48□□□□□ -0.09
LDLR-207ENST00000558013 RREB1Q92766 1687 aa14.48□□□□□ -0.09
LDLR-207ENST00000558013 H7C1D1 291 aa14.48□□□□□ -0.09
LDLR-207ENST00000558013 VSNL1P62760 191 aa14.48□□□□□ -0.09
LDLR-207ENST00000558013 ZNF507Q8TCN5 953 aa14.48□□□□□ -0.09
LDLR-207ENST00000558013 ABCB6Q9NP58 842 aa14.48□□□□□ -0.09
LDLR-207ENST00000558013 KBTBD4Q9NVX7 518 aa14.48□□□□□ -0.09
LDLR-207ENST00000558013 RMND1Q9NWS8 449 aa14.48□□□□□ -0.09
LDLR-207ENST00000558013 TTF2Q9UNY4 1162 aaKnown RBP14.48□□□□□ -0.09
LDLR-207ENST00000558013 WNK3Q9BYP7 1800 aa14.47□□□□□ -0.09
LDLR-207ENST00000558013 SRCAPQ6ZRS2 3230 aa14.47□□□□□ -0.09
LDLR-207ENST00000558013 CYP2C19P33261 490 aa14.47□□□□□ -0.09
LDLR-207ENST00000558013 NAPAP54920 295 aa14.47□□□□□ -0.09
LDLR-207ENST00000558013 JAKMIP3Q5VZ66 844 aa14.47□□□□□ -0.09
LDLR-207ENST00000558013 ANKRD40Q6AI12 368 aa14.47□□□□□ -0.09
LDLR-207ENST00000558013 TTI2Q6NXR4 508 aa14.47□□□□□ -0.09
LDLR-207ENST00000558013 ANKRD20A12PQ8NF67 263 aa14.47□□□□□ -0.09
LDLR-207ENST00000558013 NAPGQ99747 312 aaPredicted RBP14.47□□□□□ -0.09
LDLR-207ENST00000558013 NYXQ9GZU5 481 aa14.47□□□□□ -0.09
LDLR-207ENST00000558013 BIN2Q9UBW5 565 aaPredicted RBP14.47□□□□□ -0.09
LDLR-207ENST00000558013 DLEC1Q9Y238 1755 aa14.47□□□□□ -0.09
LDLR-207ENST00000558013 PALM3A6NDB9 673 aaPredicted RBP14.47□□□□□ -0.09
LDLR-207ENST00000558013 LGALS16A8MUM7 142 aa14.47□□□□□ -0.09
LDLR-207ENST00000558013 RPS6KA4O75676 772 aa14.47□□□□□ -0.09
LDLR-207ENST00000558013 HERVK_113P62684 666 aa14.47□□□□□ -0.09
LDLR-207ENST00000558013 CYP27A1Q02318 531 aa14.47□□□□□ -0.09
LDLR-207ENST00000558013 CCDC51Q96ER9 411 aa14.47□□□□□ -0.09
LDLR-207ENST00000558013 TRERF1Q96PN7 1200 aa14.47□□□□□ -0.09
LDLR-207ENST00000558013 ZKSCAN7Q9P0L1 754 aaPredicted RBP14.47□□□□□ -0.09
LDLR-207ENST00000558013 LUC7L2Q9Y383 392 aaKnown RBP14.47□□□□□ -0.09
LDLR-207ENST00000558013 FLT1P17948 1338 aa14.47□□□□□ -0.09
LDLR-207ENST00000558013 KIAA1551Q9HCM1 1747 aa14.47□□□□□ -0.09
LDLR-207ENST00000558013 CASZ1Q86V15 1759 aa14.47□□□□□ -0.09
LDLR-207ENST00000558013 ZBTB22O15209 634 aa14.46□□□□□ -0.09
LDLR-207ENST00000558013 SLURP2P0DP57 97 aa14.46□□□□□ -0.09
LDLR-207ENST00000558013 EIF6P56537 245 aaKnown RBP14.46□□□□□ -0.09
LDLR-207ENST00000558013 SPAG1Q07617 926 aa14.46□□□□□ -0.09
LDLR-207ENST00000558013 BEND6Q5SZJ8 279 aaPredicted RBP14.46□□□□□ -0.09
LDLR-207ENST00000558013 BARGINQ6ZT62 677 aa14.46□□□□□ -0.09
LDLR-207ENST00000558013 CSGALNACT2Q8N6G5 542 aa14.46□□□□□ -0.09
LDLR-207ENST00000558013 GIMAP8Q8ND71 665 aaPredicted RBP14.46□□□□□ -0.09
LDLR-207ENST00000558013 GJA10Q969M2 543 aa14.46□□□□□ -0.09
LDLR-207ENST00000558013 LACRTQ9GZZ8 138 aa14.46□□□□□ -0.09
LDLR-207ENST00000558013 SMCO2A6NFE2 343 aa14.46□□□□□ -0.09
LDLR-207ENST00000558013 CABP7Q86V35 215 aa14.46□□□□□ -0.09
LDLR-207ENST00000558013 OR8K1Q8NGG5 319 aa14.46□□□□□ -0.09
LDLR-207ENST00000558013 C8orf37Q96NL8 207 aa14.46□□□□□ -0.09
LDLR-207ENST00000558013 PIGSQ96S52 555 aa14.46□□□□□ -0.09
LDLR-207ENST00000558013 TUBGCP2Q9BSJ2 902 aa14.46□□□□□ -0.09
LDLR-207ENST00000558013 PDE11AQ9HCR9 933 aa14.46□□□□□ -0.09
LDLR-207ENST00000558013 SH3GLB2Q9NR46 395 aa14.46□□□□□ -0.09
LDLR-207ENST00000558013 FRMPD2Q68DX3 1309 aaPredicted RBP14.46□□□□□ -0.1
LDLR-207ENST00000558013 CNTNAP4Q9C0A0 1308 aa14.46□□□□□ -0.1
LDLR-207ENST00000558013 ATP1A1P05023 1023 aaKnown RBP14.46□□□□□ -0.1
LDLR-207ENST00000558013 BTDP43251 543 aa14.46□□□□□ -0.1
LDLR-207ENST00000558013 CDK8P49336 464 aa14.46□□□□□ -0.1
LDLR-207ENST00000558013 PDE4DQ08499 809 aa14.46□□□□□ -0.1
LDLR-207ENST00000558013 CAPZA3Q96KX2 299 aa14.46□□□□□ -0.1
LDLR-207ENST00000558013 EYA3Q99504 573 aa14.46□□□□□ -0.1
LDLR-207ENST00000558013 CCNL1Q9UK58 526 aaPredicted RBP14.46□□□□□ -0.1
LDLR-207ENST00000558013 CCDC151A5D8V7 595 aa14.45□□□□□ -0.1
LDLR-207ENST00000558013 RHOBTB3O94955 611 aa14.45□□□□□ -0.1
LDLR-207ENST00000558013 PLEKP08567 350 aaPredicted RBP14.45□□□□□ -0.1
LDLR-207ENST00000558013 ASIC1P78348 528 aa14.45□□□□□ -0.1
LDLR-207ENST00000558013 AMPD2Q01433 879 aa14.45□□□□□ -0.1
LDLR-207ENST00000558013 POTEDQ86YR6 584 aa14.45□□□□□ -0.1
LDLR-207ENST00000558013 CEP95Q96GE4 821 aa14.45□□□□□ -0.1
LDLR-207ENST00000558013 MMTAG2Q9BU76 263 aaKnown RBP14.45□□□□□ -0.1
LDLR-207ENST00000558013 RTFDC1Q9BY42 306 aaPredicted RBP14.45□□□□□ -0.1
LDLR-207ENST00000558013 TRIM9Q9C026 710 aa14.45□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms