RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 SUSD4Q5VX71 490 aa6.11□□□□□ -1.43
LIMA1-212ENST00000552491 PIK3AP1Q6ZUJ8 805 aa6.11□□□□□ -1.43
LIMA1-212ENST00000552491 GSPT2Q8IYD1 628 aaKnown RBP6.11□□□□□ -1.43
LIMA1-212ENST00000552491 ZNF34Q8IZ26 560 aa6.11□□□□□ -1.43
LIMA1-212ENST00000552491 LRRC15Q8TF66 581 aa6.11□□□□□ -1.43
LIMA1-212ENST00000552491 ZNF384Q8TF68 577 aa6.11□□□□□ -1.43
LIMA1-212ENST00000552491 CCDC102AQ96A19 550 aa6.11□□□□□ -1.43
LIMA1-212ENST00000552491 ZSCAN10Q96SZ4 725 aaPredicted RBP6.11□□□□□ -1.43
LIMA1-212ENST00000552491 LRP2BPQ9P2M1 347 aa6.11□□□□□ -1.43
LIMA1-212ENST00000552491 CNTNAP5Q8WYK1 1306 aa6.1□□□□□ -1.43
LIMA1-212ENST00000552491 CICQ96RK0 1608 aaPredicted RBP6.1□□□□□ -1.43
LIMA1-212ENST00000552491 COL1A1P02452 1464 aaPredicted RBP6.1□□□□□ -1.43
LIMA1-212ENST00000552491 MYH10P35580 1976 aa6.1□□□□□ -1.43
LIMA1-212ENST00000552491 C2orf72A6NCS6 295 aa6.1□□□□□ -1.43
LIMA1-212ENST00000552491 RASSF10A6NK89 507 aa6.1□□□□□ -1.43
LIMA1-212ENST00000552491 PDE2AO00408 941 aaPredicted RBP6.1□□□□□ -1.43
LIMA1-212ENST00000552491 PRPF6O94906 941 aaKnown RBP6.1□□□□□ -1.43
LIMA1-212ENST00000552491 MCM7P33993 719 aa6.1□□□□□ -1.43
LIMA1-212ENST00000552491 KLK7P49862 253 aa6.1□□□□□ -1.43
LIMA1-212ENST00000552491 PIP4K2BP78356 416 aa6.1□□□□□ -1.43
LIMA1-212ENST00000552491 AKAP17AQ02040 695 aaKnown RBP6.1□□□□□ -1.43
LIMA1-212ENST00000552491 UBXN1Q04323 297 aa6.1□□□□□ -1.43
LIMA1-212ENST00000552491 WDR93Q6P2C0 686 aa6.1□□□□□ -1.43
LIMA1-212ENST00000552491 TMTC3Q6ZXV5 915 aa6.1□□□□□ -1.43
LIMA1-212ENST00000552491 ZNF507Q8TCN5 953 aa6.1□□□□□ -1.43
LIMA1-212ENST00000552491 ESR2Q92731 530 aa6.1□□□□□ -1.43
LIMA1-212ENST00000552491 RNF25Q96BH1 459 aaPredicted RBP6.1□□□□□ -1.43
LIMA1-212ENST00000552491 EEF2KMTQ96G04 330 aa6.1□□□□□ -1.43
LIMA1-212ENST00000552491 HINFPQ9BQA5 517 aa6.1□□□□□ -1.43
LIMA1-212ENST00000552491 RIOK1Q9BRS2 568 aaKnown RBP6.1□□□□□ -1.43
LIMA1-212ENST00000552491 LACRTQ9GZZ8 138 aa6.1□□□□□ -1.43
LIMA1-212ENST00000552491 GBP3Q9H0R5 595 aa6.1□□□□□ -1.43
LIMA1-212ENST00000552491 RASSF4Q9H2L5 321 aa6.1□□□□□ -1.43
LIMA1-212ENST00000552491 RNF41Q9H4P4 317 aaPredicted RBP6.1□□□□□ -1.43
LIMA1-212ENST00000552491 FAM204AQ9H8W3 233 aa6.1□□□□□ -1.43
LIMA1-212ENST00000552491 MYO1AQ9UBC5 1043 aa6.1□□□□□ -1.43
LIMA1-212ENST00000552491 RSPH14Q9UHP6 348 aa6.1□□□□□ -1.43
LIMA1-212ENST00000552491 ANAPC4Q9UJX5 808 aa6.1□□□□□ -1.43
LIMA1-212ENST00000552491 DUSP10Q9Y6W6 482 aa6.1□□□□□ -1.43
LIMA1-212ENST00000552491 DUOX1Q9NRD9 1551 aa6.1□□□□□ -1.43
LIMA1-212ENST00000552491 CACNA1SQ13698 1873 aa6.1□□□□□ -1.43
LIMA1-212ENST00000552491 TAF1P21675 1872 aa6.1□□□□□ -1.43
LIMA1-212ENST00000552491 PP2D1A8MPX8 630 aa6.1□□□□□ -1.43
LIMA1-212ENST00000552491 PSMD14O00487 310 aa6.1□□□□□ -1.43
LIMA1-212ENST00000552491 ZNF185O15231 689 aa6.1□□□□□ -1.43
LIMA1-212ENST00000552491 GTPBP6O43824 516 aaPredicted RBP6.1□□□□□ -1.43
LIMA1-212ENST00000552491 RPS6KA5O75582 802 aa6.1□□□□□ -1.43
LIMA1-212ENST00000552491 RPN1P04843 607 aaKnown RBP6.1□□□□□ -1.43
LIMA1-212ENST00000552491 PARP1P09874 1014 aaKnown RBP6.1□□□□□ -1.43
LIMA1-212ENST00000552491 XBP1P17861 261 aa6.1□□□□□ -1.43
LIMA1-212ENST00000552491 USP14P54578 494 aa6.1□□□□□ -1.43
LIMA1-212ENST00000552491 PPP2R5BQ15173 497 aa6.1□□□□□ -1.43
LIMA1-212ENST00000552491 NAALADL2Q58DX5 795 aa6.1□□□□□ -1.43
LIMA1-212ENST00000552491 IFIT1BQ5T764 474 aaKnown RBP6.1□□□□□ -1.43
LIMA1-212ENST00000552491 ZNF658Q5TYW1 1059 aaPredicted RBP6.1□□□□□ -1.43
LIMA1-212ENST00000552491 BRINP3Q76B58 766 aa6.1□□□□□ -1.43
LIMA1-212ENST00000552491 DZIP3Q86Y13 1208 aaKnown RBP6.1□□□□□ -1.43
LIMA1-212ENST00000552491 C4orf32Q8N8J7 132 aa6.1□□□□□ -1.43
LIMA1-212ENST00000552491 FAM71BQ8TC56 605 aa6.1□□□□□ -1.43
LIMA1-212ENST00000552491 CAPZA3Q96KX2 299 aa6.1□□□□□ -1.43
LIMA1-212ENST00000552491 AGPAT5Q9NUQ2 364 aa6.1□□□□□ -1.43
LIMA1-212ENST00000552491 ABCF2Q9UG63 623 aa6.1□□□□□ -1.43
LIMA1-212ENST00000552491 FAM205AQ6ZU69 1335 aa6.1□□□□□ -1.43
LIMA1-212ENST00000552491 RTL9Q8NET4 1388 aa6.09□□□□□ -1.43
LIMA1-212ENST00000552491 AGPSO00116 658 aa6.09□□□□□ -1.43
LIMA1-212ENST00000552491 RNF40O75150 1001 aa6.09□□□□□ -1.43
LIMA1-212ENST00000552491 BMP15O95972 392 aa6.09□□□□□ -1.43
LIMA1-212ENST00000552491 LEKR1Q6ZMV7 388 aa6.09□□□□□ -1.43
LIMA1-212ENST00000552491 CADPS2Q86UW7 1296 aa6.09□□□□□ -1.43
LIMA1-212ENST00000552491 MB21D1Q8N884 522 aa6.09□□□□□ -1.43
LIMA1-212ENST00000552491 RASGRP4Q8TDF6 673 aa6.09□□□□□ -1.43
LIMA1-212ENST00000552491 KCTD12Q96CX2 325 aaKnown RBP6.09□□□□□ -1.43
LIMA1-212ENST00000552491 DNAJC7Q99615 494 aa6.09□□□□□ -1.43
LIMA1-212ENST00000552491 HPCAL4Q9UM19 191 aa6.09□□□□□ -1.43
LIMA1-212ENST00000552491 PCDHGA4Q9Y5G9 962 aa6.09□□□□□ -1.43
LIMA1-212ENST00000552491 DCCP43146 1447 aa6.09□□□□□ -1.43
LIMA1-212ENST00000552491 DLEC1Q9Y238 1755 aa6.09□□□□□ -1.43
LIMA1-212ENST00000552491 MAGEB6P1A0A0J9YX57 407 aa6.09□□□□□ -1.44
LIMA1-212ENST00000552491 KLRC4O43908 158 aa6.09□□□□□ -1.44
LIMA1-212ENST00000552491 IVLP07476 585 aa6.09□□□□□ -1.44
LIMA1-212ENST00000552491 NOP2P46087 812 aaKnown RBP6.09□□□□□ -1.44
LIMA1-212ENST00000552491 GYG1P46976 350 aa6.09□□□□□ -1.44
LIMA1-212ENST00000552491 AARSP49588 968 aaKnown RBP eCLIP6.09□□□□□ -1.44
LIMA1-212ENST00000552491 CHRNDQ07001 517 aa6.09□□□□□ -1.44
LIMA1-212ENST00000552491 FAM47AQ5JRC9 791 aa6.09□□□□□ -1.44
LIMA1-212ENST00000552491 PAPD7Q5XG87 772 aaKnown RBP6.09□□□□□ -1.44
LIMA1-212ENST00000552491 TYW1BQ6NUM6 668 aa6.09□□□□□ -1.44
LIMA1-212ENST00000552491 CATIPQ7Z7H3 387 aa6.09□□□□□ -1.44
LIMA1-212ENST00000552491 ADSSL1Q8N142 457 aa6.09□□□□□ -1.44
LIMA1-212ENST00000552491 OR8K1Q8NGG5 319 aa6.09□□□□□ -1.44
LIMA1-212ENST00000552491 PLIN2Q99541 437 aa6.09□□□□□ -1.44
LIMA1-212ENST00000552491 LGALS16A8MUM7 142 aa6.08□□□□□ -1.44
LIMA1-212ENST00000552491 ARHGAP33O14559 1287 aa6.08□□□□□ -1.44
LIMA1-212ENST00000552491 KIF3CO14782 793 aa6.08□□□□□ -1.44
LIMA1-212ENST00000552491 ZNF263O14978 683 aa6.08□□□□□ -1.44
LIMA1-212ENST00000552491 FGRP09769 529 aa6.08□□□□□ -1.44
LIMA1-212ENST00000552491 MRPS25P82663 173 aaKnown RBP6.08□□□□□ -1.44
LIMA1-212ENST00000552491 SPAG1Q07617 926 aa6.08□□□□□ -1.44
LIMA1-212ENST00000552491 TRIM14Q14142 442 aa6.08□□□□□ -1.44
LIMA1-212ENST00000552491 EZH2Q15910 746 aaKnown RBP6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms