RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 SLBPQ14493 270 aaKnown RBP eCLIP5.39□□□□□ -1.55
LIMA1-206ENST00000550611 SKOR2Q2VWA4 1001 aaPredicted RBP5.39□□□□□ -1.55
LIMA1-206ENST00000550611 GGNQ86UU5 652 aa5.39□□□□□ -1.55
LIMA1-206ENST00000550611 GLYCTKQ8IVS8 523 aa5.39□□□□□ -1.55
LIMA1-206ENST00000550611 LILRA2Q8N149 483 aa5.39□□□□□ -1.55
LIMA1-206ENST00000550611 PIWIL2Q8TC59 973 aaKnown RBP5.39□□□□□ -1.55
LIMA1-206ENST00000550611 ALKBH8Q96BT7 664 aaKnown RBP5.39□□□□□ -1.55
LIMA1-206ENST00000550611 BCO2Q9BYV7 579 aa5.39□□□□□ -1.55
LIMA1-206ENST00000550611 NIF3L1Q9GZT8 377 aa5.39□□□□□ -1.55
LIMA1-206ENST00000550611 TUT1Q9H6E5 874 aaKnown RBP5.39□□□□□ -1.55
LIMA1-206ENST00000550611 NLRP2Q9NX02 1062 aa5.39□□□□□ -1.55
LIMA1-206ENST00000550611 AKAP2Q9Y2D5 859 aa5.39□□□□□ -1.55
LIMA1-206ENST00000550611 E9PCH4 1651 aa5.39□□□□□ -1.55
LIMA1-206ENST00000550611 IQGAP3Q86VI3 1631 aa5.38□□□□□ -1.55
LIMA1-206ENST00000550611 SPHKAPQ2M3C7 1700 aa5.38□□□□□ -1.55
LIMA1-206ENST00000550611 MARF1Q9Y4F3 1742 aaKnown RBP5.38□□□□□ -1.55
LIMA1-206ENST00000550611 RFXAPO00287 272 aa5.38□□□□□ -1.55
LIMA1-206ENST00000550611 CBX7O95931 251 aa5.38□□□□□ -1.55
LIMA1-206ENST00000550611 CYP7A1P22680 504 aa5.38□□□□□ -1.55
LIMA1-206ENST00000550611 LETMD1Q6P1Q0 360 aa5.38□□□□□ -1.55
LIMA1-206ENST00000550611 PTF1AQ7RTS3 328 aa5.38□□□□□ -1.55
LIMA1-206ENST00000550611 PRRT2Q7Z6L0 340 aaPredicted RBP5.38□□□□□ -1.55
LIMA1-206ENST00000550611 PDZD8Q8NEN9 1154 aa5.38□□□□□ -1.55
LIMA1-206ENST00000550611 ELMO3Q96BJ8 720 aa5.38□□□□□ -1.55
LIMA1-206ENST00000550611 CEP44Q9C0F1 390 aa5.38□□□□□ -1.55
LIMA1-206ENST00000550611 XYLT2Q9H1B5 865 aa5.38□□□□□ -1.55
LIMA1-206ENST00000550611 ADAMTS10Q9H324 1103 aa5.38□□□□□ -1.55
LIMA1-206ENST00000550611 FBRSQ9HAH7 460 aa5.38□□□□□ -1.55
LIMA1-206ENST00000550611 BTG4Q9NY30 223 aa5.38□□□□□ -1.55
LIMA1-206ENST00000550611 PCDHA4Q9UN74 947 aa5.38□□□□□ -1.55
LIMA1-206ENST00000550611 NPHP3Q7Z494 1330 aa5.38□□□□□ -1.55
LIMA1-206ENST00000550611 DISP2A7MBM2 1401 aa5.38□□□□□ -1.55
LIMA1-206ENST00000550611 NRKQ7Z2Y5 1582 aa5.38□□□□□ -1.55
LIMA1-206ENST00000550611 COL22A1Q8NFW1 1626 aaPredicted RBP5.37□□□□□ -1.55
LIMA1-206ENST00000550611 ADRB1P08588 477 aa5.37□□□□□ -1.55
LIMA1-206ENST00000550611 TRHRP34981 398 aaPredicted RBP5.37□□□□□ -1.55
LIMA1-206ENST00000550611 TNK2Q07912 1038 aa5.37□□□□□ -1.55
LIMA1-206ENST00000550611 LRRC14Q15048 493 aa5.37□□□□□ -1.55
LIMA1-206ENST00000550611 NR0B2Q15466 257 aa5.37□□□□□ -1.55
LIMA1-206ENST00000550611 LLGL2Q6P1M3 1020 aa5.37□□□□□ -1.55
LIMA1-206ENST00000550611 FAM196AQ6ZSG2 479 aa5.37□□□□□ -1.55
LIMA1-206ENST00000550611 DMRTB1Q96MA1 342 aa5.37□□□□□ -1.55
LIMA1-206ENST00000550611 ZNF552Q9H707 407 aaPredicted RBP5.37□□□□□ -1.55
LIMA1-206ENST00000550611 CWC22Q9HCG8 908 aaKnown RBP5.37□□□□□ -1.55
LIMA1-206ENST00000550611 GCM1Q9NP62 436 aa5.37□□□□□ -1.55
LIMA1-206ENST00000550611 KCTD3Q9Y597 815 aa5.37□□□□□ -1.55
LIMA1-206ENST00000550611 RPGRIP1LQ68CZ1 1315 aa5.37□□□□□ -1.55
LIMA1-206ENST00000550611 HFM1A2PYH4 1435 aa5.37□□□□□ -1.55
LIMA1-206ENST00000550611 PXDNQ92626 1479 aa5.37□□□□□ -1.55
LIMA1-206ENST00000550611 NEXMIFQ5QGS0 1516 aa5.37□□□□□ -1.55
LIMA1-206ENST00000550611 RGPD1P0DJD0 1748 aa5.37□□□□□ -1.55
LIMA1-206ENST00000550611 TNS1Q9HBL0 1735 aaKnown RBP5.37□□□□□ -1.55
LIMA1-206ENST00000550611 ENC1O14682 589 aa5.36□□□□□ -1.55
LIMA1-206ENST00000550611 GAB4Q2WGN9 574 aa5.36□□□□□ -1.55
LIMA1-206ENST00000550611 ERICH6BQ5W0A0 696 aa5.36□□□□□ -1.55
LIMA1-206ENST00000550611 KRT28Q7Z3Y7 464 aa5.36□□□□□ -1.55
LIMA1-206ENST00000550611 ZNF605Q86T29 641 aa5.36□□□□□ -1.55
LIMA1-206ENST00000550611 C3orf58Q8NDZ4 430 aa5.36□□□□□ -1.55
LIMA1-206ENST00000550611 RIN3Q8TB24 985 aa5.36□□□□□ -1.55
LIMA1-206ENST00000550611 ARID3AQ99856 593 aa5.36□□□□□ -1.55
LIMA1-206ENST00000550611 WNT10AQ9GZT5 417 aa5.36□□□□□ -1.55
LIMA1-206ENST00000550611 YBX2Q9Y2T7 364 aaKnown RBP5.36□□□□□ -1.55
LIMA1-206ENST00000550611 SPATA31A3Q5VYP0 1347 aa5.36□□□□□ -1.55
LIMA1-206ENST00000550611 MYOM1P52179 1685 aa5.36□□□□□ -1.55
LIMA1-206ENST00000550611 SHANK3Q9BYB0 1731 aa5.36□□□□□ -1.55
LIMA1-206ENST00000550611 TNKS1BP1Q9C0C2 1729 aaKnown RBP5.36□□□□□ -1.55
LIMA1-206ENST00000550611 LRPPRCP42704 1394 aaKnown RBP5.35□□□□□ -1.55
LIMA1-206ENST00000550611 SPATA31A5Q5VU36 1347 aa5.35□□□□□ -1.55
LIMA1-206ENST00000550611 SPATA31A7Q8IWB4 1347 aa5.35□□□□□ -1.55
LIMA1-206ENST00000550611 SASH1O94885 1247 aa5.35□□□□□ -1.55
LIMA1-206ENST00000550611 CST3P01034 146 aaPredicted RBP5.35□□□□□ -1.55
LIMA1-206ENST00000550611 CELA3BP08861 270 aa5.35□□□□□ -1.55
LIMA1-206ENST00000550611 NKG7Q16617 165 aa5.35□□□□□ -1.55
LIMA1-206ENST00000550611 PI16Q6UXB8 463 aa5.35□□□□□ -1.55
LIMA1-206ENST00000550611 WAPLQ7Z5K2 1190 aa5.35□□□□□ -1.55
LIMA1-206ENST00000550611 CREG2Q8IUH2 290 aa5.35□□□□□ -1.55
LIMA1-206ENST00000550611 HID1Q8IV36 788 aa5.35□□□□□ -1.55
LIMA1-206ENST00000550611 OXR1Q8N573 874 aa5.35□□□□□ -1.55
LIMA1-206ENST00000550611 INTS4Q96HW7 963 aaKnown RBP5.35□□□□□ -1.55
LIMA1-206ENST00000550611 USP35Q9P2H5 1018 aa5.35□□□□□ -1.55
LIMA1-206ENST00000550611 PPM1HQ9ULR3 514 aa5.35□□□□□ -1.55
LIMA1-206ENST00000550611 CYP8B1Q9UNU6 501 aa5.35□□□□□ -1.55
LIMA1-206ENST00000550611 NUP188Q5SRE5 1749 aa5.34□□□□□ -1.55
LIMA1-206ENST00000550611 NALCNQ8IZF0 1738 aa5.34□□□□□ -1.55
LIMA1-206ENST00000550611 ABCC11Q96J66 1382 aa5.34□□□□□ -1.55
LIMA1-206ENST00000550611 ADGRF5Q8IZF2 1346 aa5.34□□□□□ -1.55
LIMA1-206ENST00000550611 PRAMEF27A3QJZ7 478 aa5.34□□□□□ -1.55
LIMA1-206ENST00000550611 FITM1A5D6W6 292 aa5.34□□□□□ -1.55
LIMA1-206ENST00000550611 PAGE1O75459 146 aa5.34□□□□□ -1.55
LIMA1-206ENST00000550611 ZGLP1P0C6A0 271 aa5.34□□□□□ -1.55
LIMA1-206ENST00000550611 ITGAEP38570 1179 aa5.34□□□□□ -1.55
LIMA1-206ENST00000550611 INPP5AQ14642 412 aa5.34□□□□□ -1.55
LIMA1-206ENST00000550611 TMEM132EQ6IEE7 984 aa5.34□□□□□ -1.55
LIMA1-206ENST00000550611 LRFN4Q6PJG9 635 aa5.34□□□□□ -1.55
LIMA1-206ENST00000550611 NXPE4Q6UWF7 544 aa5.34□□□□□ -1.55
LIMA1-206ENST00000550611 HDXQ7Z353 690 aa5.34□□□□□ -1.55
LIMA1-206ENST00000550611 TMC1Q8TDI8 760 aa5.34□□□□□ -1.55
LIMA1-206ENST00000550611 ANKRD24Q8TF21 1146 aa5.34□□□□□ -1.55
LIMA1-206ENST00000550611 TMPRSS5Q9H3S3 457 aa5.34□□□□□ -1.55
LIMA1-206ENST00000550611 WWC3Q9ULE0 1092 aa5.34□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms