RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 ABRAQ8N0Z2 381 aa12.74□□□□□ -0.37
VPS29-208ENST00000550267 MB21D1Q8N884 522 aa12.74□□□□□ -0.37
VPS29-208ENST00000550267 PPM1EQ8WY54 764 aa12.74□□□□□ -0.37
VPS29-208ENST00000550267 EMID1Q96A84 441 aaPredicted RBP12.74□□□□□ -0.37
VPS29-208ENST00000550267 CLUAP1Q96AJ1 413 aa12.74□□□□□ -0.37
VPS29-208ENST00000550267 ZNF576Q9H609 170 aa12.74□□□□□ -0.37
VPS29-208ENST00000550267 TMEM39AQ9NV64 488 aa12.74□□□□□ -0.37
VPS29-208ENST00000550267 PRUNE2Q8WUY3 3088 aa12.73□□□□□ -0.37
VPS29-208ENST00000550267 BCAR3O75815 825 aa12.73□□□□□ -0.37
VPS29-208ENST00000550267 FLOT1O75955 427 aa12.73□□□□□ -0.37
VPS29-208ENST00000550267 TAL1P17542 331 aaPredicted RBP12.73□□□□□ -0.37
VPS29-208ENST00000550267 SSH3Q8TE77 659 aa12.73□□□□□ -0.37
VPS29-208ENST00000550267 FRAT1Q92837 279 aaPredicted RBP12.73□□□□□ -0.37
VPS29-208ENST00000550267 LENG1Q96BZ8 264 aaPredicted RBP12.73□□□□□ -0.37
VPS29-208ENST00000550267 TIFAQ96CG3 184 aa12.73□□□□□ -0.37
VPS29-208ENST00000550267 RIOK1Q9BRS2 568 aaKnown RBP12.73□□□□□ -0.37
VPS29-208ENST00000550267 TLL1O43897 1013 aa12.72□□□□□ -0.37
VPS29-208ENST00000550267 PGK2P07205 417 aa12.72□□□□□ -0.37
VPS29-208ENST00000550267 FAAP100Q0VG06 881 aa12.72□□□□□ -0.37
VPS29-208ENST00000550267 MAP3K12Q12852 859 aa12.72□□□□□ -0.37
VPS29-208ENST00000550267 TMEM132BQ14DG7 1078 aa12.72□□□□□ -0.37
VPS29-208ENST00000550267 CLEC10AQ8IUN9 316 aa12.72□□□□□ -0.37
VPS29-208ENST00000550267 SPICE1Q8N0Z3 855 aa12.72□□□□□ -0.37
VPS29-208ENST00000550267 SLC44A5Q8NCS7 719 aa12.72□□□□□ -0.37
VPS29-208ENST00000550267 EAF2Q96CJ1 260 aaPredicted RBP12.72□□□□□ -0.37
VPS29-208ENST00000550267 MMP19Q99542 508 aa12.72□□□□□ -0.37
VPS29-208ENST00000550267 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.72□□□□□ -0.37
VPS29-208ENST00000550267 TINF2Q9BSI4 451 aa12.72□□□□□ -0.37
VPS29-208ENST00000550267 MCM9Q9NXL9 1143 aa12.72□□□□□ -0.37
VPS29-208ENST00000550267 NRBP1Q9UHY1 535 aa12.72□□□□□ -0.37
VPS29-208ENST00000550267 MAGEB6P1A0A0J9YX57 407 aa12.71□□□□□ -0.37
VPS29-208ENST00000550267 GRXCR1A8MXD5 290 aa12.71□□□□□ -0.37
VPS29-208ENST00000550267 IPO8O15397 1037 aaKnown RBP12.71□□□□□ -0.37
VPS29-208ENST00000550267 ADAMTS4O75173 837 aa12.71□□□□□ -0.37
VPS29-208ENST00000550267 SLC25A27O95847 323 aa12.71□□□□□ -0.37
VPS29-208ENST00000550267 ZNF865P0CJ78 1059 aaPredicted RBP12.71□□□□□ -0.37
VPS29-208ENST00000550267 CYP2D6P10635 497 aa12.71□□□□□ -0.37
VPS29-208ENST00000550267 AKR1A1P14550 325 aa12.71□□□□□ -0.37
VPS29-208ENST00000550267 ATP8B2P98198 1209 aa12.71□□□□□ -0.37
VPS29-208ENST00000550267 ZNF792Q3KQV3 632 aa12.71□□□□□ -0.37
VPS29-208ENST00000550267 TMEM179Q6ZVK1 233 aa12.71□□□□□ -0.37
VPS29-208ENST00000550267 ANKRD33Q7Z3H0 272 aa12.71□□□□□ -0.37
VPS29-208ENST00000550267 SIAH1Q8IUQ4 282 aa12.71□□□□□ -0.37
VPS29-208ENST00000550267 GAS2L1Q99501 681 aaPredicted RBP12.71□□□□□ -0.37
VPS29-208ENST00000550267 PRDM12Q9H4Q4 367 aa12.71□□□□□ -0.37
VPS29-208ENST00000550267 C1orf115Q9H7X2 142 aa12.71□□□□□ -0.37
VPS29-208ENST00000550267 STARD7Q9NQZ5 370 aa12.71□□□□□ -0.37
VPS29-208ENST00000550267 NAV1Q8NEY1 1877 aa12.71□□□□□ -0.37
VPS29-208ENST00000550267 DCDC2CA8MYV0 355 aa12.7□□□□□ -0.38
VPS29-208ENST00000550267 TIMP1P01033 207 aa12.7□□□□□ -0.38
VPS29-208ENST00000550267 CFHP08603 1231 aa12.7□□□□□ -0.38
VPS29-208ENST00000550267 ACLYP53396 1101 aa12.7□□□□□ -0.38
VPS29-208ENST00000550267 CCDC129Q6ZRS4 1044 aa12.7□□□□□ -0.38
VPS29-208ENST00000550267 ZNF598Q86UK7 904 aaKnown RBP12.7□□□□□ -0.38
VPS29-208ENST00000550267 TMEM57Q8N5G2 664 aa12.7□□□□□ -0.38
VPS29-208ENST00000550267 ATXN2LQ8WWM7 1075 aaKnown RBP12.7□□□□□ -0.38
VPS29-208ENST00000550267 TOX2Q96NM4 488 aa12.7□□□□□ -0.38
VPS29-208ENST00000550267 PBX4Q9BYU1 374 aa12.7□□□□□ -0.38
VPS29-208ENST00000550267 CRNKL1Q9BZJ0 848 aaKnown RBP12.7□□□□□ -0.38
VPS29-208ENST00000550267 VCPKMTQ9H867 229 aa12.7□□□□□ -0.38
VPS29-208ENST00000550267 ARHGEF10LQ9HCE6 1279 aa12.7□□□□□ -0.38
VPS29-208ENST00000550267 NOP58Q9Y2X3 529 aaKnown RBP12.7□□□□□ -0.38
VPS29-208ENST00000550267 TMX2Q9Y320 296 aa12.7□□□□□ -0.38
VPS29-208ENST00000550267 ROBO3Q96MS0 1386 aa12.69□□□□□ -0.38
VPS29-208ENST00000550267 SYNRGQ9UMZ2 1314 aa12.69□□□□□ -0.38
VPS29-208ENST00000550267 WDR46O15213 610 aaKnown RBP12.69□□□□□ -0.38
VPS29-208ENST00000550267 AKR1B1P15121 316 aa12.69□□□□□ -0.38
VPS29-208ENST00000550267 ICA1Q05084 483 aa12.69□□□□□ -0.38
VPS29-208ENST00000550267 KCTD2Q14681 263 aa12.69□□□□□ -0.38
VPS29-208ENST00000550267 TMEM240Q5SV17 173 aa12.69□□□□□ -0.38
VPS29-208ENST00000550267 C16orf59Q7L2K0 433 aa12.69□□□□□ -0.38
VPS29-208ENST00000550267 RIOX2Q8IUF8 465 aa12.69□□□□□ -0.38
VPS29-208ENST00000550267 ADAMTS19Q8TE59 1207 aa12.69□□□□□ -0.38
VPS29-208ENST00000550267 SDR42E1Q8WUS8 393 aa12.69□□□□□ -0.38
VPS29-208ENST00000550267 DYNLL2Q96FJ2 89 aa12.69□□□□□ -0.38
VPS29-208ENST00000550267 ASB2Q96Q27 587 aa12.69□□□□□ -0.38
VPS29-208ENST00000550267 TSEN34Q9BSV6 310 aaKnown RBP12.69□□□□□ -0.38
VPS29-208ENST00000550267 FBXO28Q9NVF7 368 aa12.69□□□□□ -0.38
VPS29-208ENST00000550267 THEGQ9P2T0 379 aa12.69□□□□□ -0.38
VPS29-208ENST00000550267 TBX21Q9UL17 535 aa12.69□□□□□ -0.38
VPS29-208ENST00000550267 DIS3Q9Y2L1 958 aaKnown RBP12.69□□□□□ -0.38
VPS29-208ENST00000550267 MUC3AQ02505 3323 aa12.68□□□□□ -0.38
VPS29-208ENST00000550267 MYADML2A6NDP7 307 aa12.68□□□□□ -0.38
VPS29-208ENST00000550267 MOXD2PA6NHM9 499 aa12.68□□□□□ -0.38
VPS29-208ENST00000550267 S1PR4O95977 384 aa12.68□□□□□ -0.38
VPS29-208ENST00000550267 PRR20EP86478 221 aa12.68□□□□□ -0.38
VPS29-208ENST00000550267 PRR20CP86479 221 aa12.68□□□□□ -0.38
VPS29-208ENST00000550267 PRR20DP86480 221 aa12.68□□□□□ -0.38
VPS29-208ENST00000550267 PRR20BP86481 221 aa12.68□□□□□ -0.38
VPS29-208ENST00000550267 PRR20AP86496 221 aa12.68□□□□□ -0.38
VPS29-208ENST00000550267 ADGRE1Q14246 886 aa12.68□□□□□ -0.38
VPS29-208ENST00000550267 CCDC85BQ15834 202 aaPredicted RBP12.68□□□□□ -0.38
VPS29-208ENST00000550267 KCNA10Q16322 511 aa12.68□□□□□ -0.38
VPS29-208ENST00000550267 AKNAD1Q5T1N1 836 aa12.68□□□□□ -0.38
VPS29-208ENST00000550267 MFSD5Q6N075 450 aa12.68□□□□□ -0.38
VPS29-208ENST00000550267 TMED8Q6PL24 325 aaPredicted RBP12.68□□□□□ -0.38
VPS29-208ENST00000550267 LCORLQ8N3X6 602 aa12.68□□□□□ -0.38
VPS29-208ENST00000550267 KLHDC9Q8NEP7 349 aa12.68□□□□□ -0.38
VPS29-208ENST00000550267 NUP133Q8WUM0 1156 aa12.68□□□□□ -0.38
VPS29-208ENST00000550267 SH2D4AQ9H788 454 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms