RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 ARHGEF35A5YM69 484 aa16.7■□□□□ 0.26
CUX1-214ENST00000550008 NTSR2O95665 410 aa16.7■□□□□ 0.26
CUX1-214ENST00000550008 TUBB4AP04350 444 aa16.7■□□□□ 0.26
CUX1-214ENST00000550008 LONP1P36776 959 aaKnown RBP16.7■□□□□ 0.26
CUX1-214ENST00000550008 PAGE5Q96GU1 130 aa16.7■□□□□ 0.26
CUX1-214ENST00000550008 KIAA1024Q9UPX6 916 aa16.7■□□□□ 0.26
CUX1-214ENST00000550008 B4DLN1 442 aa16.7■□□□□ 0.26
CUX1-214ENST00000550008 MCM3P25205 808 aa16.7■□□□□ 0.26
CUX1-214ENST00000550008 ABCB5Q2M3G0 1257 aa16.7■□□□□ 0.26
CUX1-214ENST00000550008 BCS1LQ9Y276 419 aa16.7■□□□□ 0.26
CUX1-214ENST00000550008 SPATA31A1Q5TZJ5 1347 aa16.7■□□□□ 0.26
CUX1-214ENST00000550008 RPL13P26373 211 aaKnown RBP16.7■□□□□ 0.26
CUX1-214ENST00000550008 ALX1Q15699 326 aa16.7■□□□□ 0.26
CUX1-214ENST00000550008 USP17L5A8MUK1 530 aa16.7■□□□□ 0.26
CUX1-214ENST00000550008 COPB1P53618 953 aaKnown RBP16.7■□□□□ 0.26
CUX1-214ENST00000550008 PABPC4Q13310 644 aaKnown RBP eCLIP16.7■□□□□ 0.26
CUX1-214ENST00000550008 MIGA2Q7L4E1 593 aa16.7■□□□□ 0.26
CUX1-214ENST00000550008 FBXO11Q86XK2 927 aa16.7■□□□□ 0.26
CUX1-214ENST00000550008 NIM1KQ8IY84 436 aa16.7■□□□□ 0.26
CUX1-214ENST00000550008 NSUN4Q96CB9 384 aaKnown RBP16.7■□□□□ 0.26
CUX1-214ENST00000550008 PPP1R13BQ96KQ4 1090 aa16.7■□□□□ 0.26
CUX1-214ENST00000550008 NCOA3Q9Y6Q9 1424 aa16.7■□□□□ 0.26
CUX1-214ENST00000550008 ALAS1P13196 640 aa16.69■□□□□ 0.26
CUX1-214ENST00000550008 RESP18Q5W5W9 173 aa16.69■□□□□ 0.26
CUX1-214ENST00000550008 SGMS1Q86VZ5 419 aa16.69■□□□□ 0.26
CUX1-214ENST00000550008 ALDH8A1Q9H2A2 487 aaPredicted RBP16.69■□□□□ 0.26
CUX1-214ENST00000550008 MEIS1O00470 390 aa16.69■□□□□ 0.26
CUX1-214ENST00000550008 IKBKBO14920 756 aa16.69■□□□□ 0.26
CUX1-214ENST00000550008 TTLL1O95922 423 aa16.69■□□□□ 0.26
CUX1-214ENST00000550008 EPB41P11171 864 aaKnown RBP16.69■□□□□ 0.26
CUX1-214ENST00000550008 CASP7P55210 303 aa16.69■□□□□ 0.26
CUX1-214ENST00000550008 CEP95Q96GE4 821 aa16.69■□□□□ 0.26
CUX1-214ENST00000550008 KIAA0754O94854 1291 aa16.69■□□□□ 0.26
CUX1-214ENST00000550008 RDXP35241 583 aaKnown RBP16.69■□□□□ 0.26
CUX1-214ENST00000550008 GPSM2P81274 684 aa16.69■□□□□ 0.26
CUX1-214ENST00000550008 RBL2Q08999 1139 aa16.69■□□□□ 0.26
CUX1-214ENST00000550008 NAA30Q147X3 362 aaPredicted RBP16.69■□□□□ 0.26
CUX1-214ENST00000550008 WTIPA6NIX2 430 aaPredicted RBP16.68■□□□□ 0.26
CUX1-214ENST00000550008 PLCG1P19174 1290 aa16.68■□□□□ 0.26
CUX1-214ENST00000550008 ST3GAL1Q11201 340 aa16.68■□□□□ 0.26
CUX1-214ENST00000550008 VPS18Q9P253 973 aa16.68■□□□□ 0.26
CUX1-214ENST00000550008 ABCC12Q96J65 1359 aa16.68■□□□□ 0.26
CUX1-214ENST00000550008 MST1RQ04912 1400 aa16.68■□□□□ 0.26
CUX1-214ENST00000550008 GAS7O60861 476 aa16.68■□□□□ 0.26
CUX1-214ENST00000550008 CUL4BQ13620 913 aa16.68■□□□□ 0.26
CUX1-214ENST00000550008 TRIM14Q14142 442 aa16.68■□□□□ 0.26
CUX1-214ENST00000550008 MYOCDQ8IZQ8 938 aa16.68■□□□□ 0.26
CUX1-214ENST00000550008 INTS5Q6P9B9 1019 aaKnown RBP16.68■□□□□ 0.26
CUX1-214ENST00000550008 DGKHQ86XP1 1220 aa16.68■□□□□ 0.26
CUX1-214ENST00000550008 SH2D4AQ9H788 454 aa16.68■□□□□ 0.26
CUX1-214ENST00000550008 DPH6Q7L8W6 267 aa16.68■□□□□ 0.26
CUX1-214ENST00000550008 HPS5Q9UPZ3 1129 aa16.68■□□□□ 0.26
CUX1-214ENST00000550008 FRMD4BQ9Y2L6 1034 aa16.68■□□□□ 0.26
CUX1-214ENST00000550008 SOWAHDA6NJG2 315 aa16.67■□□□□ 0.26
CUX1-214ENST00000550008 H7C1D1 291 aa16.67■□□□□ 0.26
CUX1-214ENST00000550008 FAM26FQ5R3K3 315 aa16.67■□□□□ 0.26
CUX1-214ENST00000550008 SRBD1Q8N5C6 995 aaKnown RBP16.67■□□□□ 0.26
CUX1-214ENST00000550008 GJA10Q969M2 543 aa16.67■□□□□ 0.26
CUX1-214ENST00000550008 TUBGCP2Q9BSJ2 902 aa16.67■□□□□ 0.26
CUX1-214ENST00000550008 ENC1O14682 589 aa16.67■□□□□ 0.26
CUX1-214ENST00000550008 TRAPPC10P48553 1259 aa16.67■□□□□ 0.26
CUX1-214ENST00000550008 CYP2J2P51589 502 aa16.67■□□□□ 0.26
CUX1-214ENST00000550008 OVOS2A0A0G2JMS6 1433 aa16.67■□□□□ 0.26
CUX1-214ENST00000550008 USP27XA6NNY8 438 aa16.67■□□□□ 0.26
CUX1-214ENST00000550008 EXOC3O60645 756 aa16.67■□□□□ 0.26
CUX1-214ENST00000550008 HOXA13P31271 388 aaPredicted RBP16.66■□□□□ 0.26
CUX1-214ENST00000550008 KLHL30Q0D2K2 578 aa16.66■□□□□ 0.26
CUX1-214ENST00000550008 ARHGAP44Q17R89 818 aa16.66■□□□□ 0.26
CUX1-214ENST00000550008 KIAA0753Q2KHM9 967 aa16.66■□□□□ 0.26
CUX1-214ENST00000550008 UTP14CQ5TAP6 766 aaKnown RBP16.66■□□□□ 0.26
CUX1-214ENST00000550008 ACRBPQ8NEB7 543 aa16.66■□□□□ 0.26
CUX1-214ENST00000550008 CNOT6LQ96LI5 555 aaKnown RBP16.66■□□□□ 0.26
CUX1-214ENST00000550008 IFIH1Q9BYX4 1025 aaKnown RBP16.66■□□□□ 0.26
CUX1-214ENST00000550008 TRIM49BA6NDI0 452 aa16.66■□□□□ 0.26
CUX1-214ENST00000550008 ERCC5P28715 1186 aaPredicted RBP16.66■□□□□ 0.26
CUX1-214ENST00000550008 CETN2P41208 172 aa16.66■□□□□ 0.26
CUX1-214ENST00000550008 GRIN1Q05586 938 aa16.66■□□□□ 0.26
CUX1-214ENST00000550008 MXD3Q9BW11 206 aa16.66■□□□□ 0.26
CUX1-214ENST00000550008 PANK4Q9NVE7 773 aa16.66■□□□□ 0.26
CUX1-214ENST00000550008 CLEC11AQ9Y240 323 aa16.66■□□□□ 0.26
CUX1-214ENST00000550008 C21orf2O43822 256 aa16.66■□□□□ 0.26
CUX1-214ENST00000550008 PPP1R2P41236 205 aa16.66■□□□□ 0.26
CUX1-214ENST00000550008 ENOX1Q8TC92 643 aaKnown RBP16.66■□□□□ 0.26
CUX1-214ENST00000550008 LARP4BQ92615 738 aaKnown RBP16.66■□□□□ 0.26
CUX1-214ENST00000550008 SECISBP2LQ93073 1101 aaKnown RBP16.66■□□□□ 0.26
CUX1-214ENST00000550008 NAP1L4Q99733 375 aaKnown RBP16.66■□□□□ 0.26
CUX1-214ENST00000550008 PICK1Q9NRD5 415 aa16.66■□□□□ 0.26
CUX1-214ENST00000550008 TMEM260Q9NX78 707 aa16.66■□□□□ 0.26
CUX1-214ENST00000550008 IFI16Q16666 785 aaKnown RBP16.66■□□□□ 0.26
CUX1-214ENST00000550008 SLC9C1Q4G0N8 1177 aa16.66■□□□□ 0.26
CUX1-214ENST00000550008 DYDC1Q8WWB3 177 aa16.66■□□□□ 0.26
CUX1-214ENST00000550008 CNKSR1Q969H4 720 aa16.66■□□□□ 0.26
CUX1-214ENST00000550008 GJD4Q96KN9 370 aaPredicted RBP16.66■□□□□ 0.26
CUX1-214ENST00000550008 GLT8D2Q9H1C3 349 aa16.66■□□□□ 0.26
CUX1-214ENST00000550008 TDRD3Q9H7E2 651 aaKnown RBP16.66■□□□□ 0.26
CUX1-214ENST00000550008 TESPA1A2RU30 521 aaPredicted RBP16.65■□□□□ 0.26
CUX1-214ENST00000550008 POTEMA6NI47 508 aa16.65■□□□□ 0.26
CUX1-214ENST00000550008 CTNNA2P26232 953 aa16.65■□□□□ 0.26
CUX1-214ENST00000550008 GRM1Q13255 1194 aa16.65■□□□□ 0.26
CUX1-214ENST00000550008 SEPT7Q16181 437 aaKnown RBP16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms