RNA–Protein interactions for RNA: ENST00000544040.5

CHD4-210, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CHD4, Length 6,514 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-210ENST00000544040 YWHAEP62258 255 aaKnown RBP16.9■□□□□ 0.3
CHD4-210ENST00000544040 MYSM1Q5VVJ2 828 aa16.9■□□□□ 0.3
CHD4-210ENST00000544040 CCDC197Q8NCU1 140 aa16.9■□□□□ 0.3
CHD4-210ENST00000544040 ZBBXA8MT70 800 aa16.9■□□□□ 0.3
CHD4-210ENST00000544040 GNGT2O14610 69 aa16.9■□□□□ 0.3
CHD4-210ENST00000544040 PDE8AO60658 829 aa16.9■□□□□ 0.3
CHD4-210ENST00000544040 PPP1R13BQ96KQ4 1090 aa16.9■□□□□ 0.3
CHD4-210ENST00000544040 NT5C3AQ9H0P0 336 aa16.9■□□□□ 0.3
CHD4-210ENST00000544040 RRP15Q9Y3B9 282 aaKnown RBP16.9■□□□□ 0.3
CHD4-210ENST00000544040 SGK1O00141 431 aa16.89■□□□□ 0.3
CHD4-210ENST00000544040 CHAMP1Q96JM3 812 aa16.89■□□□□ 0.3
CHD4-210ENST00000544040 USP28Q96RU2 1077 aa16.89■□□□□ 0.3
CHD4-210ENST00000544040 INTUQ9ULD6 942 aa16.89■□□□□ 0.3
CHD4-210ENST00000544040 DDX17Q92841 729 aaKnown RBP16.89■□□□□ 0.29
CHD4-210ENST00000544040 SUN1O94901 812 aa16.89■□□□□ 0.29
CHD4-210ENST00000544040 C2orf54Q08AI8 447 aa16.89■□□□□ 0.29
CHD4-210ENST00000544040 POLR3AO14802 1390 aaPredicted RBP16.89■□□□□ 0.29
CHD4-210ENST00000544040 PPARAQ07869 468 aa16.89■□□□□ 0.29
CHD4-210ENST00000544040 MUM1L1Q5H9M0 696 aa16.89■□□□□ 0.29
CHD4-210ENST00000544040 KDM3AQ9Y4C1 1321 aa16.89■□□□□ 0.29
CHD4-210ENST00000544040 GARSP41250 739 aaKnown RBP16.89■□□□□ 0.29
CHD4-210ENST00000544040 OTUD6AQ7L8S5 288 aa16.89■□□□□ 0.29
CHD4-210ENST00000544040 GPKOWQ92917 476 aaPredicted RBP eCLIP16.89■□□□□ 0.293e-6■□□□□ 10.4
CHD4-210ENST00000544040 C1orf112Q9NSG2 853 aa16.89■□□□□ 0.29
CHD4-210ENST00000544040 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.89■□□□□ 0.29
CHD4-210ENST00000544040 NRBP1Q9UHY1 535 aa16.89■□□□□ 0.29
CHD4-210ENST00000544040 GPC4O75487 556 aa16.88■□□□□ 0.29
CHD4-210ENST00000544040 POLD1P28340 1107 aa16.88■□□□□ 0.29
CHD4-210ENST00000544040 CCDC127Q96BQ5 260 aa16.88■□□□□ 0.29
CHD4-210ENST00000544040 MESDQ14696 234 aa16.88■□□□□ 0.29
CHD4-210ENST00000544040 LLGL1Q15334 1064 aa16.88■□□□□ 0.29
CHD4-210ENST00000544040 RFX6Q8HWS3 928 aa16.88■□□□□ 0.29
CHD4-210ENST00000544040 PIP4K2CQ8TBX8 421 aa16.88■□□□□ 0.29
CHD4-210ENST00000544040 IFT140Q96RY7 1462 aa16.88■□□□□ 0.29
CHD4-210ENST00000544040 NDUFA8P51970 172 aa16.88■□□□□ 0.29
CHD4-210ENST00000544040 CCDC68Q9H2F9 335 aa16.88■□□□□ 0.29
CHD4-210ENST00000544040 PARD3Q8TEW0 1356 aa16.88■□□□□ 0.29
CHD4-210ENST00000544040 PLB1Q6P1J6 1458 aa16.88■□□□□ 0.29
CHD4-210ENST00000544040 INHBAP08476 426 aa16.88■□□□□ 0.29
CHD4-210ENST00000544040 IL9RQ01113 521 aa16.88■□□□□ 0.29
CHD4-210ENST00000544040 TMED2Q15363 201 aa16.88■□□□□ 0.29
CHD4-210ENST00000544040 NLRX1Q86UT6 975 aa16.88■□□□□ 0.29
CHD4-210ENST00000544040 HAUS1Q96CS2 278 aa16.88■□□□□ 0.29
CHD4-210ENST00000544040 LZTS2Q9BRK4 669 aa16.88■□□□□ 0.29
CHD4-210ENST00000544040 MED4Q9NPJ6 270 aa16.88■□□□□ 0.29
CHD4-210ENST00000544040 THRAP3Q9Y2W1 955 aaKnown RBP16.88■□□□□ 0.29
CHD4-210ENST00000544040 CLIC4Q9Y696 253 aa16.88■□□□□ 0.29
CHD4-210ENST00000544040 PASKQ96RG2 1323 aa16.88■□□□□ 0.29
CHD4-210ENST00000544040 HOXC9P31274 260 aa16.88■□□□□ 0.29
CHD4-210ENST00000544040 POLE2P56282 527 aa16.88■□□□□ 0.29
CHD4-210ENST00000544040 ANKRD20A4Q4UJ75 823 aa16.88■□□□□ 0.29
CHD4-210ENST00000544040 ANKRD20A8PQ5CZ79 823 aa16.88■□□□□ 0.29
CHD4-210ENST00000544040 ANKRD20A2Q5SQ80 823 aa16.88■□□□□ 0.29
CHD4-210ENST00000544040 ANKRD20A1Q5TYW2 823 aa16.88■□□□□ 0.29
CHD4-210ENST00000544040 MYLK4Q86YV6 388 aaPredicted RBP16.88■□□□□ 0.29
CHD4-210ENST00000544040 SLC35F6Q8N357 371 aa16.88■□□□□ 0.29
CHD4-210ENST00000544040 LARSQ9P2J5 1176 aaKnown RBP16.88■□□□□ 0.29
CHD4-210ENST00000544040 ARMCX3Q9UH62 379 aaPredicted RBP16.88■□□□□ 0.29
CHD4-210ENST00000544040 CD2APQ9Y5K6 639 aa16.88■□□□□ 0.29
CHD4-210ENST00000544040 USP19O94966 1318 aa16.88■□□□□ 0.29
CHD4-210ENST00000544040 BRD1O95696 1058 aa16.87■□□□□ 0.29
CHD4-210ENST00000544040 RPN1P04843 607 aaKnown RBP16.87■□□□□ 0.29
CHD4-210ENST00000544040 PCDH11XQ9BZA7 1347 aa16.87■□□□□ 0.29
CHD4-210ENST00000544040 PCDH11YQ9BZA8 1340 aa16.87■□□□□ 0.29
CHD4-210ENST00000544040 GOLGA8HP0CJ92 632 aa16.87■□□□□ 0.29
CHD4-210ENST00000544040 PDE1BQ01064 536 aa16.87■□□□□ 0.29
CHD4-210ENST00000544040 CDR2Q01850 454 aa16.87■□□□□ 0.29
CHD4-210ENST00000544040 PKP1Q13835 747 aa16.87■□□□□ 0.29
CHD4-210ENST00000544040 ZNF654Q8IZM8 581 aa16.87■□□□□ 0.29
CHD4-210ENST00000544040 GPT2Q8TD30 523 aa16.87■□□□□ 0.29
CHD4-210ENST00000544040 IBTKQ9P2D0 1353 aaPredicted RBP16.87■□□□□ 0.29
CHD4-210ENST00000544040 TCP1P17987 556 aaKnown RBP16.87■□□□□ 0.29
CHD4-210ENST00000544040 ARHGEF16Q5VV41 709 aa16.87■□□□□ 0.29
CHD4-210ENST00000544040 NOSTRINQ8IVI9 506 aa16.87■□□□□ 0.29
CHD4-210ENST00000544040 GDAP1Q8TB36 358 aa16.87■□□□□ 0.29
CHD4-210ENST00000544040 IQCDQ96DY2 449 aa16.87■□□□□ 0.29
CHD4-210ENST00000544040 SPATS2LQ9NUQ6 558 aaKnown RBP16.87■□□□□ 0.29
CHD4-210ENST00000544040 MRC2Q9UBG0 1479 aa16.87■□□□□ 0.29
CHD4-210ENST00000544040 AOX1Q06278 1338 aa16.87■□□□□ 0.29
CHD4-210ENST00000544040 PDCD2Q16342 344 aaPredicted RBP16.87■□□□□ 0.29
CHD4-210ENST00000544040 RSBN1LQ6PCB5 846 aaPredicted RBP16.87■□□□□ 0.29
CHD4-210ENST00000544040 TMTC3Q6ZXV5 915 aa16.87■□□□□ 0.29
CHD4-210ENST00000544040 TNNC2P02585 160 aa16.87■□□□□ 0.29
CHD4-210ENST00000544040 CASP14P31944 242 aa16.87■□□□□ 0.29
CHD4-210ENST00000544040 ADAM9Q13443 819 aa16.87■□□□□ 0.29
CHD4-210ENST00000544040 XKR9Q5GH70 373 aa16.87■□□□□ 0.29
CHD4-210ENST00000544040 LPIN2Q92539 896 aa16.87■□□□□ 0.29
CHD4-210ENST00000544040 G3BP2Q9UN86 482 aaKnown RBP16.87■□□□□ 0.29
CHD4-210ENST00000544040 SLC4A1P02730 911 aa16.86■□□□□ 0.29
CHD4-210ENST00000544040 PIK3CAP42336 1068 aa16.86■□□□□ 0.29
CHD4-210ENST00000544040 ETF1P62495 437 aaKnown RBP16.86■□□□□ 0.29
CHD4-210ENST00000544040 BLIDQ8IZY5 108 aa16.86■□□□□ 0.29
CHD4-210ENST00000544040 NCKAP5LQ9HCH0 1330 aa16.86■□□□□ 0.29
CHD4-210ENST00000544040 RFX1P22670 979 aa16.86■□□□□ 0.29
CHD4-210ENST00000544040 SH3BGRP55822 239 aaPredicted RBP16.86■□□□□ 0.29
CHD4-210ENST00000544040 TBC1D10BQ4KMP7 808 aaPredicted RBP16.86■□□□□ 0.29
CHD4-210ENST00000544040 PSPC1Q8WXF1 523 aaKnown RBP16.86■□□□□ 0.29
CHD4-210ENST00000544040 KRT82Q9NSB4 513 aa16.86■□□□□ 0.29
CHD4-210ENST00000544040 ATICP31939 592 aa16.86■□□□□ 0.29
CHD4-210ENST00000544040 PTH1RQ03431 593 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms