RNA–Protein interactions for RNA: ENST00000535081.1

SYNE1-232, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 561 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-232ENST00000535081 NCKAP1LP55160 1127 aa8.11□□□□□ -1.11
SYNE1-232ENST00000535081 CBX2Q14781 532 aaPredicted RBP8.11□□□□□ -1.11
SYNE1-232ENST00000535081 PLEKHN1Q494U1 663 aaPredicted RBP8.11□□□□□ -1.11
SYNE1-232ENST00000535081 TP53I13Q8NBR0 393 aaPredicted RBP8.11□□□□□ -1.11
SYNE1-232ENST00000535081 BORCS6Q96GS4 357 aa8.11□□□□□ -1.11
SYNE1-232ENST00000535081 AP5S1Q9NUS5 200 aa8.11□□□□□ -1.11
SYNE1-232ENST00000535081 ITGAEP38570 1179 aa8.1□□□□□ -1.11
SYNE1-232ENST00000535081 CRTC3Q6UUV7 619 aa8.1□□□□□ -1.11
SYNE1-232ENST00000535081 TMEM192Q8IY95 271 aa8.1□□□□□ -1.11
SYNE1-232ENST00000535081 EAF1Q96JC9 268 aaPredicted RBP8.1□□□□□ -1.11
SYNE1-232ENST00000535081 JMJD8Q96S16 334 aa8.1□□□□□ -1.11
SYNE1-232ENST00000535081 VAV1P15498 845 aa8.09□□□□□ -1.11
SYNE1-232ENST00000535081 TAGLNQ01995 201 aaKnown RBP8.09□□□□□ -1.11
SYNE1-232ENST00000535081 SLC6A18Q96N87 628 aa8.09□□□□□ -1.11
SYNE1-232ENST00000535081 PRR13Q9NZ81 148 aa8.09□□□□□ -1.11
SYNE1-232ENST00000535081 FBXL21Q9UKT6 434 aa8.09□□□□□ -1.11
SYNE1-232ENST00000535081 FFAR3O14843 346 aa8.08□□□□□ -1.12
SYNE1-232ENST00000535081 NME1P15531 152 aaKnown RBP8.08□□□□□ -1.12
SYNE1-232ENST00000535081 IGFBP6P24592 240 aaPredicted RBP8.08□□□□□ -1.12
SYNE1-232ENST00000535081 MAPKAPK2P49137 400 aa8.08□□□□□ -1.12
SYNE1-232ENST00000535081 ZNF200P98182 395 aaPredicted RBP8.08□□□□□ -1.12
SYNE1-232ENST00000535081 CAP1Q01518 475 aa8.08□□□□□ -1.12
SYNE1-232ENST00000535081 CLCQ05315 142 aa8.08□□□□□ -1.12
SYNE1-232ENST00000535081 NR1I3Q14994 352 aa8.08□□□□□ -1.12
SYNE1-232ENST00000535081 ZC3H14Q6PJT7 736 aaKnown RBP8.08□□□□□ -1.12
SYNE1-232ENST00000535081 GK5Q6ZS86 529 aa8.08□□□□□ -1.12
SYNE1-232ENST00000535081 AEBP1Q8IUX7 1158 aa8.08□□□□□ -1.12
SYNE1-232ENST00000535081 ZNF296Q8WUU4 475 aaPredicted RBP8.08□□□□□ -1.12
SYNE1-232ENST00000535081 IRS2Q9Y4H2 1338 aa8.07□□□□□ -1.12
SYNE1-232ENST00000535081 PFKLP17858 780 aa8.07□□□□□ -1.12
SYNE1-232ENST00000535081 LIMS1P48059 325 aa8.07□□□□□ -1.12
SYNE1-232ENST00000535081 EFEMP1Q12805 493 aa8.07□□□□□ -1.12
SYNE1-232ENST00000535081 AUHQ13825 339 aaKnown RBP8.07□□□□□ -1.12
SYNE1-232ENST00000535081 SPATS1Q496A3 300 aa8.07□□□□□ -1.12
SYNE1-232ENST00000535081 SEZ6Q53EL9 994 aa8.07□□□□□ -1.12
SYNE1-232ENST00000535081 NLGN1Q8N2Q7 840 aa8.07□□□□□ -1.12
SYNE1-232ENST00000535081 TMEM52Q8NDY8 209 aa8.07□□□□□ -1.12
SYNE1-232ENST00000535081 BDH2Q9BUT1 245 aa8.07□□□□□ -1.12
SYNE1-232ENST00000535081 MEIS3P2A8K0S8 358 aa8.06□□□□□ -1.12
SYNE1-232ENST00000535081 TNFRSF10CO14798 259 aa8.06□□□□□ -1.12
SYNE1-232ENST00000535081 KCNC1P48547 511 aa8.06□□□□□ -1.12
SYNE1-232ENST00000535081 RTP2Q5QGT7 225 aa8.06□□□□□ -1.12
SYNE1-232ENST00000535081 REXO1Q8N1G1 1221 aaKnown RBP8.06□□□□□ -1.12
SYNE1-232ENST00000535081 NAT16Q8N8M0 369 aa8.06□□□□□ -1.12
SYNE1-232ENST00000535081 ANTXR1Q9H6X2 564 aa8.06□□□□□ -1.12
SYNE1-232ENST00000535081 UBP1Q9NZI7 540 aa8.06□□□□□ -1.12
SYNE1-232ENST00000535081 GSNP06396 782 aa8.05□□□□□ -1.12
SYNE1-232ENST00000535081 MSL3P1P0C860 447 aa8.05□□□□□ -1.12
SYNE1-232ENST00000535081 SLURP1P55000 103 aa8.05□□□□□ -1.12
SYNE1-232ENST00000535081 MVKQ03426 396 aa8.05□□□□□ -1.12
SYNE1-232ENST00000535081 PLP2Q04941 152 aa8.05□□□□□ -1.12
SYNE1-232ENST00000535081 LRRFIP1Q32MZ4 808 aaKnown RBP8.05□□□□□ -1.12
SYNE1-232ENST00000535081 DSCC1Q9BVC3 393 aa8.05□□□□□ -1.12
SYNE1-232ENST00000535081 A0A1W2PQ27 194 aa8.04□□□□□ -1.12
SYNE1-232ENST00000535081 A0A1W2PQ64 194 aa8.04□□□□□ -1.12
SYNE1-232ENST00000535081 A0A1W2PQC6 194 aa8.04□□□□□ -1.12
SYNE1-232ENST00000535081 A0A1W2PQD8 194 aa8.04□□□□□ -1.12
SYNE1-232ENST00000535081 MCM4P33991 863 aa8.04□□□□□ -1.12
SYNE1-232ENST00000535081 APOBRQ0VD83 1088 aa8.04□□□□□ -1.12
SYNE1-232ENST00000535081 RTP5Q14D33 572 aa8.04□□□□□ -1.12
SYNE1-232ENST00000535081 ADAMTS1Q9UHI8 967 aa8.04□□□□□ -1.12
SYNE1-232ENST00000535081 TIMELESSQ9UNS1 1208 aa8.04□□□□□ -1.12
SYNE1-232ENST00000535081 PRICKLE3O43900 615 aaPredicted RBP8.03□□□□□ -1.12
SYNE1-232ENST00000535081 GSTM1P09488 218 aa8.03□□□□□ -1.12
SYNE1-232ENST00000535081 ZNF165P49910 485 aa8.03□□□□□ -1.12
SYNE1-232ENST00000535081 TARBP2Q15633 366 aaKnown RBP8.03□□□□□ -1.12
SYNE1-232ENST00000535081 HLA-DQA1Q5Y7H0 255 aa8.03□□□□□ -1.12
SYNE1-232ENST00000535081 SLC9A7Q96T83 725 aa8.03□□□□□ -1.12
SYNE1-232ENST00000535081 SHOXO15266 292 aa8.02□□□□□ -1.13
SYNE1-232ENST00000535081 SRGAP3O43295 1099 aa8.02□□□□□ -1.13
SYNE1-232ENST00000535081 CYBBP04839 570 aa8.02□□□□□ -1.13
SYNE1-232ENST00000535081 DBHP09172 617 aa8.02□□□□□ -1.13
SYNE1-232ENST00000535081 FBLN1P23142 703 aa8.02□□□□□ -1.13
SYNE1-232ENST00000535081 VWA3BQ502W6 1294 aa8.02□□□□□ -1.13
SYNE1-232ENST00000535081 PAQR3Q6TCH7 311 aa8.02□□□□□ -1.13
SYNE1-232ENST00000535081 JAMLQ86YT9 394 aa8.02□□□□□ -1.13
SYNE1-232ENST00000535081 C7orf61Q8IZ16 206 aa8.02□□□□□ -1.13
SYNE1-232ENST00000535081 SLC12A9Q9BXP2 914 aa8.02□□□□□ -1.13
SYNE1-232ENST00000535081 KRTAP17-1Q9BYP8 105 aa8.02□□□□□ -1.13
SYNE1-232ENST00000535081 SUCOQ9UBS9 1254 aaKnown RBP8.02□□□□□ -1.13
SYNE1-232ENST00000535081 CWF19L1Q69YN2 538 aaKnown RBP8.01□□□□□ -1.13
SYNE1-232ENST00000535081 CYP2R1Q6VVX0 501 aa8.01□□□□□ -1.13
SYNE1-232ENST00000535081 HS2ST1Q7LGA3 356 aa8.01□□□□□ -1.13
SYNE1-232ENST00000535081 SUSD2Q9UGT4 822 aa8.01□□□□□ -1.13
SYNE1-232ENST00000535081 GGT7Q9UJ14 662 aa8.01□□□□□ -1.13
SYNE1-232ENST00000535081 HCFC2Q9Y5Z7 792 aa8.01□□□□□ -1.13
SYNE1-232ENST00000535081 C9IYK1 514 aa8□□□□□ -1.13
SYNE1-232ENST00000535081 PLA2G1BP04054 148 aaKnown RBP8□□□□□ -1.13
SYNE1-232ENST00000535081 ZXDCQ2QGD7 858 aaPredicted RBP8□□□□□ -1.13
SYNE1-232ENST00000535081 ZFYVE27Q5T4F4 411 aa8□□□□□ -1.13
SYNE1-232ENST00000535081 LIPIQ6XZB0 460 aa8□□□□□ -1.13
SYNE1-232ENST00000535081 LSRQ86X29 649 aaPredicted RBP8□□□□□ -1.13
SYNE1-232ENST00000535081 CCDC144CPQ8IYA2 1237 aa8□□□□□ -1.13
SYNE1-232ENST00000535081 FNIP1Q8TF40 1166 aa8□□□□□ -1.13
SYNE1-232ENST00000535081 DHRS1Q96LJ7 313 aa8□□□□□ -1.13
SYNE1-232ENST00000535081 PLA2G2DQ9UNK4 145 aa8□□□□□ -1.13
SYNE1-232ENST00000535081 A0A1W2PQJ5 194 aa7.99□□□□□ -1.13
SYNE1-232ENST00000535081 FAM86C2PA6NEL3 165 aa7.99□□□□□ -1.13
SYNE1-232ENST00000535081 H0Y8X5 98 aa7.99□□□□□ -1.13
SYNE1-232ENST00000535081 BICRALQ6AI39 1079 aa7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms