RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 PRR19A6NJB7 356 aa6.47□□□□□ -1.37
CD44-236ENST00000533222 K7ELQ4 463 aaPredicted RBP6.47□□□□□ -1.37
CD44-236ENST00000533222 BAG4O95429 457 aaKnown RBP6.47□□□□□ -1.37
CD44-236ENST00000533222 RAG1P15918 1043 aa6.47□□□□□ -1.37
CD44-236ENST00000533222 ATP2B1P20020 1258 aa6.47□□□□□ -1.37
CD44-236ENST00000533222 ETFBP38117 255 aa6.47□□□□□ -1.37
CD44-236ENST00000533222 ADCY2Q08462 1091 aa6.47□□□□□ -1.37
CD44-236ENST00000533222 CDCP2Q5VXM1 449 aa6.47□□□□□ -1.37
CD44-236ENST00000533222 OGFOD3Q6PK18 319 aa6.47□□□□□ -1.37
CD44-236ENST00000533222 APBB1IPQ7Z5R6 666 aaPredicted RBP6.47□□□□□ -1.37
CD44-236ENST00000533222 VPS37DQ86XT2 251 aa6.47□□□□□ -1.37
CD44-236ENST00000533222 FMNL3Q8IVF7 1028 aa6.47□□□□□ -1.37
CD44-236ENST00000533222 MFSD2AQ8NA29 543 aa6.47□□□□□ -1.37
CD44-236ENST00000533222 HDAC7Q8WUI4 952 aa6.47□□□□□ -1.37
CD44-236ENST00000533222 CPLX3Q8WVH0 158 aa6.47□□□□□ -1.37
CD44-236ENST00000533222 ANKRD7Q92527 254 aa6.47□□□□□ -1.37
CD44-236ENST00000533222 CFAP53Q96M91 514 aa6.47□□□□□ -1.37
CD44-236ENST00000533222 TANGO6Q9C0B7 1094 aa6.47□□□□□ -1.37
CD44-236ENST00000533222 ZNF408Q9H9D4 720 aa6.47□□□□□ -1.37
CD44-236ENST00000533222 TRPV5Q9NQA5 729 aa6.47□□□□□ -1.37
CD44-236ENST00000533222 CCDC39Q9UFE4 941 aa6.47□□□□□ -1.37
CD44-236ENST00000533222 MORC2Q9Y6X9 1032 aaPredicted RBP6.47□□□□□ -1.37
CD44-236ENST00000533222 ARHGAP31Q2M1Z3 1444 aa6.47□□□□□ -1.37
CD44-236ENST00000533222 RSF1Q96T23 1441 aaPredicted RBP6.47□□□□□ -1.37
CD44-236ENST00000533222 COL17A1Q9UMD9 1497 aaPredicted RBP6.47□□□□□ -1.37
CD44-236ENST00000533222 BICDL2A1A5D9 508 aa6.46□□□□□ -1.38
CD44-236ENST00000533222 PRR33A8MZF0 331 aa6.46□□□□□ -1.38
CD44-236ENST00000533222 SSBP05455 408 aaKnown RBP eCLIP6.46□□□□□ -1.38
CD44-236ENST00000533222 PTPRGP23470 1445 aa6.46□□□□□ -1.38
CD44-236ENST00000533222 HOXA10P31260 410 aaPredicted RBP6.46□□□□□ -1.38
CD44-236ENST00000533222 RWDD2BP57060 319 aa6.46□□□□□ -1.38
CD44-236ENST00000533222 TTLL5Q6EMB2 1281 aa6.46□□□□□ -1.38
CD44-236ENST00000533222 OTUD6AQ7L8S5 288 aa6.46□□□□□ -1.38
CD44-236ENST00000533222 CATIPQ7Z7H3 387 aa6.46□□□□□ -1.38
CD44-236ENST00000533222 EFCAB13Q8IY85 973 aa6.46□□□□□ -1.38
CD44-236ENST00000533222 RBBP8NLQ8NC74 664 aaPredicted RBP6.46□□□□□ -1.38
CD44-236ENST00000533222 MORC4Q8TE76 937 aa6.46□□□□□ -1.38
CD44-236ENST00000533222 LZTS2Q9BRK4 669 aa6.46□□□□□ -1.38
CD44-236ENST00000533222 OSBPL1AQ9BXW6 950 aa6.46□□□□□ -1.38
CD44-236ENST00000533222 LRRC4CQ9HCJ2 640 aa6.46□□□□□ -1.38
CD44-236ENST00000533222 A1CFQ9NQ94 594 aaKnown RBP6.46□□□□□ -1.38
CD44-236ENST00000533222 STK26Q9P289 416 aa6.46□□□□□ -1.38
CD44-236ENST00000533222 RSPH14Q9UHP6 348 aa6.46□□□□□ -1.38
CD44-236ENST00000533222 YEATS2Q9ULM3 1422 aa6.46□□□□□ -1.38
CD44-236ENST00000533222 JRKLQ9Y4A0 524 aa6.46□□□□□ -1.38
CD44-236ENST00000533222 A0A1B0GUL7 405 aa6.45□□□□□ -1.38
CD44-236ENST00000533222 TNFRSF10CO14798 259 aa6.45□□□□□ -1.38
CD44-236ENST00000533222 SGSM2O43147 1006 aa6.45□□□□□ -1.38
CD44-236ENST00000533222 EPB41L2O43491 1005 aaKnown RBP6.45□□□□□ -1.38
CD44-236ENST00000533222 HTATSF1O43719 755 aaKnown RBP6.45□□□□□ -1.38
CD44-236ENST00000533222 IMPDH2P12268 514 aa6.45□□□□□ -1.38
CD44-236ENST00000533222 NEXNQ0ZGT2 675 aa6.45□□□□□ -1.38
CD44-236ENST00000533222 MLECQ14165 292 aa6.45□□□□□ -1.38
CD44-236ENST00000533222 PDIA5Q14554 519 aa6.45□□□□□ -1.38
CD44-236ENST00000533222 RASA3Q14644 834 aa6.45□□□□□ -1.38
CD44-236ENST00000533222 FILIP1Q7Z7B0 1213 aa6.45□□□□□ -1.38
CD44-236ENST00000533222 TMEM192Q8IY95 271 aa6.45□□□□□ -1.38
CD44-236ENST00000533222 MIGA1Q8NAN2 632 aa6.45□□□□□ -1.38
CD44-236ENST00000533222 PNISRQ8TF01 805 aaKnown RBP6.45□□□□□ -1.38
CD44-236ENST00000533222 DHX38Q92620 1227 aaKnown RBP6.45□□□□□ -1.38
CD44-236ENST00000533222 PDLIM2Q96JY6 352 aa6.45□□□□□ -1.38
CD44-236ENST00000533222 ZNF512BQ96KM6 892 aaPredicted RBP6.45□□□□□ -1.38
CD44-236ENST00000533222 CCDC74BQ96LY2 380 aa6.45□□□□□ -1.38
CD44-236ENST00000533222 IQCGQ9H095 443 aaKnown RBP6.45□□□□□ -1.38
CD44-236ENST00000533222 TNKS2Q9H2K2 1166 aa6.45□□□□□ -1.38
CD44-236ENST00000533222 VEZTQ9HBM0 779 aa6.45□□□□□ -1.38
CD44-236ENST00000533222 ETAA1Q9NY74 926 aa6.45□□□□□ -1.38
CD44-236ENST00000533222 FAM53CQ9NYF3 392 aa6.45□□□□□ -1.38
CD44-236ENST00000533222 POGKQ9P215 609 aa6.45□□□□□ -1.38
CD44-236ENST00000533222 STRIP2Q9ULQ0 834 aa6.45□□□□□ -1.38
CD44-236ENST00000533222 TPX2Q9ULW0 747 aaKnown RBP6.45□□□□□ -1.38
CD44-236ENST00000533222 ZKSCAN5Q9Y2L8 839 aa6.45□□□□□ -1.38
CD44-236ENST00000533222 R3HCC1Q9Y3T6 440 aaKnown RBP6.45□□□□□ -1.38
CD44-236ENST00000533222 CGNL1Q0VF96 1302 aa6.45□□□□□ -1.38
CD44-236ENST00000533222 RPGRIP1LQ68CZ1 1315 aa6.45□□□□□ -1.38
CD44-236ENST00000533222 RGS13O14921 159 aa6.44□□□□□ -1.38
CD44-236ENST00000533222 SMAD7O15105 426 aaKnown RBP6.44□□□□□ -1.38
CD44-236ENST00000533222 GSC2O15499 205 aa6.44□□□□□ -1.38
CD44-236ENST00000533222 ADAM23O75077 832 aa6.44□□□□□ -1.38
CD44-236ENST00000533222 NBPF7P0C2Y1 421 aaPredicted RBP6.44□□□□□ -1.38
CD44-236ENST00000533222 ITIH2P19823 946 aa6.44□□□□□ -1.38
CD44-236ENST00000533222 TRPC1P48995 793 aa6.44□□□□□ -1.38
CD44-236ENST00000533222 BIRC2Q13490 618 aa6.44□□□□□ -1.38
CD44-236ENST00000533222 LRRFIP1Q32MZ4 808 aaKnown RBP6.44□□□□□ -1.38
CD44-236ENST00000533222 MAP9Q49MG5 647 aa6.44□□□□□ -1.38
CD44-236ENST00000533222 WWC2Q6AWC2 1192 aa6.44□□□□□ -1.38
CD44-236ENST00000533222 CLEC4GQ6UXB4 293 aa6.44□□□□□ -1.38
CD44-236ENST00000533222 CCDC73Q6ZRK6 1079 aa6.44□□□□□ -1.38
CD44-236ENST00000533222 RBM12BQ8IXT5 1001 aaKnown RBP6.44□□□□□ -1.38
CD44-236ENST00000533222 SMC5Q8IY18 1101 aa6.44□□□□□ -1.38
CD44-236ENST00000533222 CCDC191Q8NCU4 936 aa6.44□□□□□ -1.38
CD44-236ENST00000533222 SLC6A18Q96N87 628 aa6.44□□□□□ -1.38
CD44-236ENST00000533222 CRBNQ96SW2 442 aa6.44□□□□□ -1.38
CD44-236ENST00000533222 SH3GL3Q99963 347 aa6.44□□□□□ -1.38
CD44-236ENST00000533222 NOL10Q9BSC4 688 aaKnown RBP6.44□□□□□ -1.38
CD44-236ENST00000533222 MAF1Q9H063 256 aa6.44□□□□□ -1.38
CD44-236ENST00000533222 IRF2BPLQ9H1B7 796 aa6.44□□□□□ -1.38
CD44-236ENST00000533222 PRDM5Q9NQX1 630 aaPredicted RBP6.44□□□□□ -1.38
CD44-236ENST00000533222 ATG3Q9NT62 314 aa6.44□□□□□ -1.38
CD44-236ENST00000533222 CEP131Q9UPN4 1083 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms