RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 TMEM232C9JQI7 657 aa21.62■■□□□ 1.05
VPS28-207ENST00000526977 BACE1P56817 501 aa21.62■■□□□ 1.05
VPS28-207ENST00000526977 TYRO3Q06418 890 aa21.62■■□□□ 1.05
VPS28-207ENST00000526977 VGLL4Q14135 290 aa21.62■■□□□ 1.05
VPS28-207ENST00000526977 ZYXQ15942 572 aaKnown RBP21.62■■□□□ 1.05
VPS28-207ENST00000526977 FAM43AQ8N2R8 423 aa21.62■■□□□ 1.05
VPS28-207ENST00000526977 PIGSQ96S52 555 aa21.62■■□□□ 1.05
VPS28-207ENST00000526977 NMRK2Q9NPI5 230 aa21.62■■□□□ 1.05
VPS28-207ENST00000526977 VPS54Q9P1Q0 977 aa21.62■■□□□ 1.05
VPS28-207ENST00000526977 C19orf81C9J6K1 198 aa21.62■■□□□ 1.05
VPS28-207ENST00000526977 hCG_1984214I3L0E3 225 aa21.62■■□□□ 1.05
VPS28-207ENST00000526977 PLA2G6O60733 806 aa21.62■■□□□ 1.05
VPS28-207ENST00000526977 SLC16A2P36021 539 aa21.62■■□□□ 1.05
VPS28-207ENST00000526977 TTLL12Q14166 644 aaPredicted RBP21.62■■□□□ 1.05
VPS28-207ENST00000526977 KIAA1755Q5JYT7 1200 aa21.62■■□□□ 1.05
VPS28-207ENST00000526977 HOMER1Q86YM7 354 aa21.62■■□□□ 1.05
VPS28-207ENST00000526977 FMR1NBQ8N0W7 255 aaPredicted RBP21.62■■□□□ 1.05
VPS28-207ENST00000526977 ZNF713Q8N859 430 aaPredicted RBP21.62■■□□□ 1.05
VPS28-207ENST00000526977 CHURC1Q8WUH1 139 aa21.62■■□□□ 1.05
VPS28-207ENST00000526977 MTMR8Q96EF0 704 aa21.62■■□□□ 1.05
VPS28-207ENST00000526977 NUP88Q99567 741 aaPredicted RBP21.62■■□□□ 1.05
VPS28-207ENST00000526977 PHF20Q9BVI0 1012 aa21.62■■□□□ 1.05
VPS28-207ENST00000526977 BARHL2Q9NY43 387 aa21.62■■□□□ 1.05
VPS28-207ENST00000526977 PNMA6FA0A0J9YX94 578 aa21.61■■□□□ 1.05
VPS28-207ENST00000526977 A0A1B0GVL5 298 aa21.61■■□□□ 1.05
VPS28-207ENST00000526977 TOB1P50616 345 aaPredicted RBP21.61■■□□□ 1.05
VPS28-207ENST00000526977 STAT2P52630 851 aa21.61■■□□□ 1.05
VPS28-207ENST00000526977 CCDC12Q8WUD4 166 aaPredicted RBP21.61■■□□□ 1.05
VPS28-207ENST00000526977 MRVI1Q9Y6F6 885 aa21.61■■□□□ 1.05
VPS28-207ENST00000526977 SNCAIPQ9Y6H5 919 aa21.61■■□□□ 1.05
VPS28-207ENST00000526977 BAZ2BQ9UIF8 2168 aaKnown RBP21.61■■□□□ 1.05
VPS28-207ENST00000526977 MYH6P13533 1939 aa21.61■■□□□ 1.05
VPS28-207ENST00000526977 WDR46O15213 610 aaKnown RBP21.6■■□□□ 1.05
VPS28-207ENST00000526977 CTAGE5O15320 804 aa21.6■■□□□ 1.05
VPS28-207ENST00000526977 PPP6R2O75170 966 aa21.6■■□□□ 1.05
VPS28-207ENST00000526977 MARCKSP29966 332 aaPredicted RBP21.6■■□□□ 1.05
VPS28-207ENST00000526977 IKQ13123 557 aaPredicted RBP21.6■■□□□ 1.05
VPS28-207ENST00000526977 NR5A1Q13285 461 aa21.6■■□□□ 1.05
VPS28-207ENST00000526977 FAM83BQ5T0W9 1011 aa21.6■■□□□ 1.05
VPS28-207ENST00000526977 CCDC148Q8NFR7 591 aa21.6■■□□□ 1.05
VPS28-207ENST00000526977 OXER1Q8TDS5 423 aa21.6■■□□□ 1.05
VPS28-207ENST00000526977 UNCXA6NJT0 531 aa21.6■■□□□ 1.05
VPS28-207ENST00000526977 ZBTB5O15062 677 aa21.6■■□□□ 1.05
VPS28-207ENST00000526977 CALML3P27482 149 aa21.6■■□□□ 1.05
VPS28-207ENST00000526977 NDUFA8P51970 172 aa21.6■■□□□ 1.05
VPS28-207ENST00000526977 MTMR2Q13614 643 aa21.6■■□□□ 1.05
VPS28-207ENST00000526977 HEATR3Q7Z4Q2 680 aa21.6■■□□□ 1.05
VPS28-207ENST00000526977 FAM160B2Q86V87 743 aa21.6■■□□□ 1.05
VPS28-207ENST00000526977 RBM46Q8TBY0 533 aaKnown RBP21.6■■□□□ 1.05
VPS28-207ENST00000526977 ZNF526Q8TF50 670 aaPredicted RBP21.6■■□□□ 1.05
VPS28-207ENST00000526977 TRIM44Q96DX7 344 aaPredicted RBP21.6■■□□□ 1.05
VPS28-207ENST00000526977 BRMS1Q9HCU9 246 aa21.6■■□□□ 1.05
VPS28-207ENST00000526977 EIF4ENIF1Q9NRA8 985 aaKnown RBP21.6■■□□□ 1.05
VPS28-207ENST00000526977 FEM1BQ9UK73 627 aa21.6■■□□□ 1.05
VPS28-207ENST00000526977 AFG3L2Q9Y4W6 797 aa21.6■■□□□ 1.05
VPS28-207ENST00000526977 KINO60870 393 aaKnown RBP21.59■■□□□ 1.05
VPS28-207ENST00000526977 CMA1P23946 247 aa21.59■■□□□ 1.05
VPS28-207ENST00000526977 SYDE2Q5VT97 1194 aa21.59■■□□□ 1.05
VPS28-207ENST00000526977 WWC2Q6AWC2 1192 aa21.59■■□□□ 1.05
VPS28-207ENST00000526977 NLRP5P59047 1200 aa21.58■■□□□ 1.05
VPS28-207ENST00000526977 GALNT17Q6IS24 598 aa21.58■■□□□ 1.05
VPS28-207ENST00000526977 SASS6Q6UVJ0 657 aa21.58■■□□□ 1.05
VPS28-207ENST00000526977 GPKOWQ92917 476 aaPredicted RBP eCLIP21.58■■□□□ 1.05
VPS28-207ENST00000526977 EMILIN3Q9NT22 766 aa21.58■■□□□ 1.05
VPS28-207ENST00000526977 TRIM75PA6NK02 468 aa21.58■■□□□ 1.04
VPS28-207ENST00000526977 STXBP3O00186 592 aa21.57■■□□□ 1.04
VPS28-207ENST00000526977 TRAF5O00463 557 aa21.57■■□□□ 1.04
VPS28-207ENST00000526977 KRT2P35908 639 aa21.57■■□□□ 1.04
VPS28-207ENST00000526977 FKBP1BP68106 108 aa21.57■■□□□ 1.04
VPS28-207ENST00000526977 PPATQ06203 517 aa21.57■■□□□ 1.04
VPS28-207ENST00000526977 RILPL1Q5EBL4 403 aa21.57■■□□□ 1.04
VPS28-207ENST00000526977 ERO1BQ86YB8 467 aa21.57■■□□□ 1.04
VPS28-207ENST00000526977 JMYQ8N9B5 988 aa21.57■■□□□ 1.04
VPS28-207ENST00000526977 C12orf42Q96LP6 360 aa21.57■■□□□ 1.04
VPS28-207ENST00000526977 RRAGDQ9NQL2 400 aaPredicted RBP21.56■■□□□ 1.04
VPS28-207ENST00000526977 PRR12Q9ULL5 1215 aa21.56■■□□□ 1.04
VPS28-207ENST00000526977 NAPAP54920 295 aa21.56■■□□□ 1.04
VPS28-207ENST00000526977 ANO6Q4KMQ2 910 aa21.56■■□□□ 1.04
VPS28-207ENST00000526977 LDLRAD1Q5T700 205 aa21.56■■□□□ 1.04
VPS28-207ENST00000526977 VCAM1P19320 739 aa21.55■■□□□ 1.04
VPS28-207ENST00000526977 GNA11P29992 359 aa21.55■■□□□ 1.04
VPS28-207ENST00000526977 TRAF1Q13077 416 aa21.55■■□□□ 1.04
VPS28-207ENST00000526977 CDC37Q16543 378 aaPredicted RBP21.55■■□□□ 1.04
VPS28-207ENST00000526977 SH3D19Q5HYK7 790 aa21.55■■□□□ 1.04
VPS28-207ENST00000526977 MOB2Q70IA6 237 aa21.55■■□□□ 1.04
VPS28-207ENST00000526977 FAM200AQ8TCP9 573 aa21.55■■□□□ 1.04
VPS28-207ENST00000526977 ZMYND12Q9H0C1 365 aa21.55■■□□□ 1.04
VPS28-207ENST00000526977 TMOD4Q9NZQ9 345 aa21.55■■□□□ 1.04
VPS28-207ENST00000526977 NPY5RQ15761 445 aa21.55■■□□□ 1.04
VPS28-207ENST00000526977 QRICH1Q2TAL8 776 aa21.55■■□□□ 1.04
VPS28-207ENST00000526977 CHADLQ6NUI6 762 aa21.55■■□□□ 1.04
VPS28-207ENST00000526977 TYW1BQ6NUM6 668 aa21.55■■□□□ 1.04
VPS28-207ENST00000526977 PPP1R18Q6NYC8 613 aa21.55■■□□□ 1.04
VPS28-207ENST00000526977 SHC4Q6S5L8 630 aa21.55■■□□□ 1.04
VPS28-207ENST00000526977 PRPF38AQ8NAV1 312 aaKnown RBP21.55■■□□□ 1.04
VPS28-207ENST00000526977 ZNF408Q9H9D4 720 aa21.55■■□□□ 1.04
VPS28-207ENST00000526977 ELP3Q9H9T3 547 aa21.55■■□□□ 1.04
VPS28-207ENST00000526977 C6orf50Q9HD87 102 aa21.55■■□□□ 1.04
VPS28-207ENST00000526977 PCDHA4Q9UN74 947 aa21.55■■□□□ 1.04
VPS28-207ENST00000526977 ESYT2A0FGR8 921 aa21.54■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms