RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 SLC51AQ86UW1 340 aa16.75■□□□□ 0.27
NUP54-217ENST00000514987 NLGN1Q8N2Q7 840 aa16.75■□□□□ 0.27
NUP54-217ENST00000514987 NOC3LQ8WTT2 800 aaKnown RBP16.75■□□□□ 0.27
NUP54-217ENST00000514987 NELFBQ8WX92 580 aa16.75■□□□□ 0.27
NUP54-217ENST00000514987 TMX4Q9H1E5 349 aaPredicted RBP16.75■□□□□ 0.27
NUP54-217ENST00000514987 KBTBD4Q9NVX7 518 aa16.75■□□□□ 0.27
NUP54-217ENST00000514987 MTMR4Q9NYA4 1195 aa16.75■□□□□ 0.27
NUP54-217ENST00000514987 GOLGA8HP0CJ92 632 aa16.74■□□□□ 0.27
NUP54-217ENST00000514987 NPR1P16066 1061 aa16.74■□□□□ 0.27
NUP54-217ENST00000514987 ALDH1B1P30837 517 aa16.74■□□□□ 0.27
NUP54-217ENST00000514987 ADKP55263 362 aaKnown RBP16.74■□□□□ 0.27
NUP54-217ENST00000514987 GABPAQ06546 454 aa16.74■□□□□ 0.27
NUP54-217ENST00000514987 PPP1R18Q6NYC8 613 aa16.74■□□□□ 0.27
NUP54-217ENST00000514987 TRIM65Q6PJ69 517 aa16.74■□□□□ 0.27
NUP54-217ENST00000514987 ZNF397Q8NF99 534 aaPredicted RBP16.74■□□□□ 0.27
NUP54-217ENST00000514987 STAMQ92783 540 aa16.74■□□□□ 0.27
NUP54-217ENST00000514987 TMEM60Q9H2L4 133 aa16.74■□□□□ 0.27
NUP54-217ENST00000514987 DNAI1Q9UI46 699 aa16.74■□□□□ 0.27
NUP54-217ENST00000514987 RHOBTB3O94955 611 aa16.73■□□□□ 0.27
NUP54-217ENST00000514987 CCDC175P0C221 793 aa16.73■□□□□ 0.27
NUP54-217ENST00000514987 FECHP22830 423 aa16.73■□□□□ 0.27
NUP54-217ENST00000514987 AMPD3Q01432 767 aa16.73■□□□□ 0.27
NUP54-217ENST00000514987 USP17L2Q6R6M4 530 aa16.73■□□□□ 0.27
NUP54-217ENST00000514987 KRT27Q7Z3Y8 459 aa16.73■□□□□ 0.27
NUP54-217ENST00000514987 SMYD4Q8IYR2 804 aaPredicted RBP16.73■□□□□ 0.27
NUP54-217ENST00000514987 ADSSL1Q8N142 457 aa16.73■□□□□ 0.27
NUP54-217ENST00000514987 REXO1Q8N1G1 1221 aaKnown RBP16.73■□□□□ 0.27
NUP54-217ENST00000514987 UBE2Q2Q8WVN8 375 aa16.73■□□□□ 0.27
NUP54-217ENST00000514987 QTRT2Q9H974 415 aaKnown RBP16.73■□□□□ 0.27
NUP54-217ENST00000514987 MTMR7Q9Y216 660 aa16.73■□□□□ 0.27
NUP54-217ENST00000514987 NRXN2Q9P2S2 1712 aa16.73■□□□□ 0.27
NUP54-217ENST00000514987 IGKV6D-41A0A0C4DH26 115 aa16.72■□□□□ 0.27
NUP54-217ENST00000514987 PSMA7O14818 248 aa16.72■□□□□ 0.27
NUP54-217ENST00000514987 N4BP3O15049 544 aa16.72■□□□□ 0.27
NUP54-217ENST00000514987 TEX33O43247 280 aa16.72■□□□□ 0.27
NUP54-217ENST00000514987 MFAP3LO75121 409 aa16.72■□□□□ 0.27
NUP54-217ENST00000514987 PDHBP11177 359 aa16.72■□□□□ 0.27
NUP54-217ENST00000514987 EEF1GP26641 437 aaKnown RBP16.72■□□□□ 0.27
NUP54-217ENST00000514987 KRT31Q15323 416 aa16.72■□□□□ 0.27
NUP54-217ENST00000514987 NAALADL2Q58DX5 795 aa16.72■□□□□ 0.27
NUP54-217ENST00000514987 TCP11X2Q5H9J9 407 aa16.72■□□□□ 0.27
NUP54-217ENST00000514987 HHIPL2Q6UWX4 724 aa16.72■□□□□ 0.27
NUP54-217ENST00000514987 CABP7Q86V35 215 aa16.72■□□□□ 0.27
NUP54-217ENST00000514987 DHTKD1Q96HY7 919 aaPredicted RBP16.72■□□□□ 0.27
NUP54-217ENST00000514987 THAP9Q9H5L6 903 aa16.72■□□□□ 0.27
NUP54-217ENST00000514987 MYH8P13535 1937 aa16.72■□□□□ 0.27
NUP54-217ENST00000514987 KCNJ18B7U540 433 aa16.72■□□□□ 0.27
NUP54-217ENST00000514987 CCNT1O60563 726 aaKnown RBP16.72■□□□□ 0.27
NUP54-217ENST00000514987 TTLL1O95922 423 aa16.72■□□□□ 0.27
NUP54-217ENST00000514987 SNHG28P0DPA3 235 aa16.72■□□□□ 0.27
NUP54-217ENST00000514987 PDE6BP35913 854 aa16.72■□□□□ 0.27
NUP54-217ENST00000514987 PRCPP42785 496 aa16.72■□□□□ 0.27
NUP54-217ENST00000514987 COPB1P53618 953 aaKnown RBP16.72■□□□□ 0.27
NUP54-217ENST00000514987 RBL2Q08999 1139 aa16.72■□□□□ 0.27
NUP54-217ENST00000514987 GOLGA8FQ08AF8 430 aa16.72■□□□□ 0.27
NUP54-217ENST00000514987 GOLGA8DPQ0D2H9 430 aa16.72■□□□□ 0.27
NUP54-217ENST00000514987 KCNJ12Q14500 433 aa16.72■□□□□ 0.27
NUP54-217ENST00000514987 TXNRD1Q16881 649 aa16.72■□□□□ 0.27
NUP54-217ENST00000514987 GIMAP8Q8ND71 665 aaPredicted RBP16.72■□□□□ 0.27
NUP54-217ENST00000514987 FLAD1Q8NFF5 587 aa16.72■□□□□ 0.27
NUP54-217ENST00000514987 PIGSQ96S52 555 aa16.72■□□□□ 0.27
NUP54-217ENST00000514987 SERPINB13Q9UIV8 391 aa16.72■□□□□ 0.27
NUP54-217ENST00000514987 ANKRD31Q8N7Z5 1873 aa16.71■□□□□ 0.27
NUP54-217ENST00000514987 USP17L5A8MUK1 530 aa16.71■□□□□ 0.27
NUP54-217ENST00000514987 HLA-DOAP06340 250 aa16.71■□□□□ 0.27
NUP54-217ENST00000514987 SRGNP10124 158 aa16.71■□□□□ 0.27
NUP54-217ENST00000514987 CASQ1P31415 396 aa16.71■□□□□ 0.27
NUP54-217ENST00000514987 ADCY7P51828 1080 aa16.71■□□□□ 0.27
NUP54-217ENST00000514987 LETM2Q2VYF4 491 aa16.71■□□□□ 0.27
NUP54-217ENST00000514987 TMTC1Q8IUR5 882 aa16.71■□□□□ 0.27
NUP54-217ENST00000514987 CALML4Q96GE6 196 aa16.71■□□□□ 0.27
NUP54-217ENST00000514987 C7orf25Q9BPX7 421 aa16.71■□□□□ 0.27
NUP54-217ENST00000514987 RAB34Q9BZG1 259 aa16.71■□□□□ 0.27
NUP54-217ENST00000514987 BICDL2A1A5D9 508 aa16.7■□□□□ 0.26
NUP54-217ENST00000514987 CDC25AP30304 524 aa16.7■□□□□ 0.26
NUP54-217ENST00000514987 KMT5BQ4FZB7 885 aa16.7■□□□□ 0.26
NUP54-217ENST00000514987 GPATCH4Q5T3I0 446 aaKnown RBP16.7■□□□□ 0.26
NUP54-217ENST00000514987 DPP8Q6V1X1 898 aaPredicted RBP16.7■□□□□ 0.26
NUP54-217ENST00000514987 TEKT1Q969V4 418 aa16.7■□□□□ 0.26
NUP54-217ENST00000514987 CCDC17Q96LX7 622 aa16.7■□□□□ 0.26
NUP54-217ENST00000514987 MRIQ9BWK5 157 aa16.7■□□□□ 0.26
NUP54-217ENST00000514987 USP40Q9NVE5 1235 aa16.7■□□□□ 0.26
NUP54-217ENST00000514987 MAGEC2Q9UBF1 373 aaPredicted RBP16.7■□□□□ 0.26
NUP54-217ENST00000514987 TTF2Q9UNY4 1162 aaKnown RBP16.7■□□□□ 0.26
NUP54-217ENST00000514987 PNMA6FA0A0J9YX94 578 aa16.69■□□□□ 0.26
NUP54-217ENST00000514987 A0A1W2PQC6 194 aa16.69■□□□□ 0.26
NUP54-217ENST00000514987 G3V3G9 751 aa16.69■□□□□ 0.26
NUP54-217ENST00000514987 RIMBP2O15034 1052 aa16.69■□□□□ 0.26
NUP54-217ENST00000514987 KLRC4O43908 158 aa16.69■□□□□ 0.26
NUP54-217ENST00000514987 TRIM37O94972 964 aa16.69■□□□□ 0.26
NUP54-217ENST00000514987 FXR2P51116 673 aaKnown RBP eCLIP16.69■□□□□ 0.26
NUP54-217ENST00000514987 PICALMQ13492 652 aa16.69■□□□□ 0.26
NUP54-217ENST00000514987 TUBB2AQ13885 445 aa16.69■□□□□ 0.26
NUP54-217ENST00000514987 PTPN21Q16825 1174 aa16.69■□□□□ 0.26
NUP54-217ENST00000514987 TMEM266Q2M3C6 531 aa16.69■□□□□ 0.26
NUP54-217ENST00000514987 COBLL1Q53SF7 1204 aa16.69■□□□□ 0.26
NUP54-217ENST00000514987 DCAF8Q5TAQ9 597 aa16.69■□□□□ 0.26
NUP54-217ENST00000514987 TOGARAM2Q6ZUX3 1019 aa16.69■□□□□ 0.26
NUP54-217ENST00000514987 FAM114A1Q8IWE2 563 aa16.69■□□□□ 0.26
NUP54-217ENST00000514987 MNS1Q8NEH6 495 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms