RNA–Protein interactions for RNA: ENST00000510852.1

USP53-207, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 2,437 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-207ENST00000510852 RAC2P15153 192 aa11.01□□□□□ -0.65
USP53-207ENST00000510852 VARSP26640 1264 aaKnown RBP11.01□□□□□ -0.65
USP53-207ENST00000510852 IGHMBP2P38935 993 aaKnown RBP11.01□□□□□ -0.65
USP53-207ENST00000510852 TFCP2Q12800 502 aa11.01□□□□□ -0.65
USP53-207ENST00000510852 COX10Q12887 443 aa11.01□□□□□ -0.65
USP53-207ENST00000510852 ZC3H12BQ5HYM0 836 aaKnown RBP11.01□□□□□ -0.65
USP53-207ENST00000510852 CKAP2LQ8IYA6 745 aa11.01□□□□□ -0.65
USP53-207ENST00000510852 FBXO22Q8NEZ5 403 aa11.01□□□□□ -0.65
USP53-207ENST00000510852 CELF1Q92879 486 aaKnown RBP11.01□□□□□ -0.65
USP53-207ENST00000510852 CLP1Q92989 425 aaKnown RBP11.01□□□□□ -0.65
USP53-207ENST00000510852 FAM212AQ96EL1 285 aa11.01□□□□□ -0.65
USP53-207ENST00000510852 CDK5RAP3Q96JB5 506 aa11.01□□□□□ -0.65
USP53-207ENST00000510852 MPHOSPH8Q99549 860 aa11.01□□□□□ -0.65
USP53-207ENST00000510852 CASZ1Q86V15 1759 aa11.01□□□□□ -0.65
USP53-207ENST00000510852 ATP9BO43861 1147 aa11□□□□□ -0.65
USP53-207ENST00000510852 AKR1B10O60218 316 aa11□□□□□ -0.65
USP53-207ENST00000510852 ROR1Q01973 937 aa11□□□□□ -0.65
USP53-207ENST00000510852 CYP26C1Q6V0L0 522 aa11□□□□□ -0.65
USP53-207ENST00000510852 CCDC129Q6ZRS4 1044 aa11□□□□□ -0.65
USP53-207ENST00000510852 ANKRD18AQ8IVF6 992 aa11□□□□□ -0.65
USP53-207ENST00000510852 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP11□□□□□ -0.65
USP53-207ENST00000510852 ARIH2O95376 493 aa11□□□□□ -0.65
USP53-207ENST00000510852 F2P00734 622 aa11□□□□□ -0.65
USP53-207ENST00000510852 MSL3P1P0C860 447 aa11□□□□□ -0.65
USP53-207ENST00000510852 SERPINB3P29508 390 aa11□□□□□ -0.65
USP53-207ENST00000510852 EIF2B5Q13144 721 aaKnown RBP11□□□□□ -0.65
USP53-207ENST00000510852 CRTC2Q53ET0 693 aaPredicted RBP11□□□□□ -0.65
USP53-207ENST00000510852 GLYCTKQ8IVS8 523 aa11□□□□□ -0.65
USP53-207ENST00000510852 RGL4Q8IZJ4 473 aa11□□□□□ -0.65
USP53-207ENST00000510852 OTUD7AQ8TE49 926 aaPredicted RBP11□□□□□ -0.65
USP53-207ENST00000510852 CPLX1O14810 134 aa10.99□□□□□ -0.65
USP53-207ENST00000510852 COL4A1P02462 1669 aa10.99□□□□□ -0.65
USP53-207ENST00000510852 MMEP08473 750 aa10.99□□□□□ -0.65
USP53-207ENST00000510852 RPS8P62241 208 aaKnown RBP10.99□□□□□ -0.65
USP53-207ENST00000510852 PLBD1Q6P4A8 553 aa10.99□□□□□ -0.65
USP53-207ENST00000510852 ZNF710Q8N1W2 664 aa10.99□□□□□ -0.65
USP53-207ENST00000510852 ZBTB9Q96C00 473 aa10.99□□□□□ -0.65
USP53-207ENST00000510852 RBM17Q96I25 401 aaKnown RBP10.99□□□□□ -0.65
USP53-207ENST00000510852 EIF2AK1Q9BQI3 630 aaKnown RBP10.99□□□□□ -0.65
USP53-207ENST00000510852 PLEKHA5Q9HAU0 1116 aa10.99□□□□□ -0.65
USP53-207ENST00000510852 EPB41L4AQ9HCS5 686 aaPredicted RBP10.99□□□□□ -0.65
USP53-207ENST00000510852 EMILIN3Q9NT22 766 aa10.99□□□□□ -0.65
USP53-207ENST00000510852 SEL1LQ9UBV2 794 aa10.99□□□□□ -0.65
USP53-207ENST00000510852 TSKSQ9UJT2 592 aa10.99□□□□□ -0.65
USP53-207ENST00000510852 FOXN3O00409 490 aaPredicted RBP10.99□□□□□ -0.65
USP53-207ENST00000510852 USP17L8P0C7I0 530 aa10.99□□□□□ -0.65
USP53-207ENST00000510852 HOXA10P31260 410 aaPredicted RBP10.99□□□□□ -0.65
USP53-207ENST00000510852 ARHGAP4P98171 946 aa10.99□□□□□ -0.65
USP53-207ENST00000510852 GRAPQ13588 217 aa10.99□□□□□ -0.65
USP53-207ENST00000510852 METTL24Q5JXM2 366 aa10.99□□□□□ -0.65
USP53-207ENST00000510852 SWT1Q5T5J6 900 aaKnown RBP10.99□□□□□ -0.65
USP53-207ENST00000510852 KCT2Q8NC54 265 aa10.99□□□□□ -0.65
USP53-207ENST00000510852 GRAPLQ8TC17 118 aaPredicted RBP10.99□□□□□ -0.65
USP53-207ENST00000510852 GSDMAQ96QA5 445 aa10.99□□□□□ -0.65
USP53-207ENST00000510852 ZMAT5Q9UDW3 170 aaKnown RBP10.99□□□□□ -0.65
USP53-207ENST00000510852 DDX49Q9Y6V7 483 aaKnown RBP10.99□□□□□ -0.65
USP53-207ENST00000510852 LRP5O75197 1615 aa10.99□□□□□ -0.65
USP53-207ENST00000510852 ICMTO60725 284 aa10.98□□□□□ -0.65
USP53-207ENST00000510852 ATF7P17544 494 aaPredicted RBP10.98□□□□□ -0.65
USP53-207ENST00000510852 ARSHQ5FYA8 562 aa10.98□□□□□ -0.65
USP53-207ENST00000510852 IRGCQ6NXR0 463 aa10.98□□□□□ -0.65
USP53-207ENST00000510852 AACSQ86V21 672 aa10.98□□□□□ -0.65
USP53-207ENST00000510852 EAF2Q96CJ1 260 aaPredicted RBP10.98□□□□□ -0.65
USP53-207ENST00000510852 KIF2CQ99661 725 aa10.98□□□□□ -0.65
USP53-207ENST00000510852 GTPBP4Q9BZE4 634 aaKnown RBP10.98□□□□□ -0.65
USP53-207ENST00000510852 FBXO10Q9UK96 956 aa10.98□□□□□ -0.65
USP53-207ENST00000510852 MROH5Q6ZUA9 1318 aa10.98□□□□□ -0.65
USP53-207ENST00000510852 SORBS3O60504 671 aa10.98□□□□□ -0.65
USP53-207ENST00000510852 NPR1P16066 1061 aa10.98□□□□□ -0.65
USP53-207ENST00000510852 ATF4P18848 351 aaPredicted RBP10.98□□□□□ -0.65
USP53-207ENST00000510852 HPDP32754 393 aaPredicted RBP10.98□□□□□ -0.65
USP53-207ENST00000510852 TNNI3KQ59H18 835 aa10.98□□□□□ -0.65
USP53-207ENST00000510852 LRCH2Q5VUJ6 765 aa10.98□□□□□ -0.65
USP53-207ENST00000510852 C2CD5Q86YS7 1000 aa10.98□□□□□ -0.65
USP53-207ENST00000510852 PLEKHM2Q8IWE5 1019 aa10.98□□□□□ -0.65
USP53-207ENST00000510852 APPBP2Q92624 585 aa10.98□□□□□ -0.65
USP53-207ENST00000510852 CRAMP1Q96RY5 1269 aa10.98□□□□□ -0.65
USP53-207ENST00000510852 SLC7A5P2Q9GIP4 190 aa10.98□□□□□ -0.65
USP53-207ENST00000510852 SMYD2Q9NRG4 433 aa10.98□□□□□ -0.65
USP53-207ENST00000510852 FAM217BQ9NTX9 383 aaPredicted RBP10.98□□□□□ -0.65
USP53-207ENST00000510852 C6orf203Q9P0P8 240 aaPredicted RBP10.98□□□□□ -0.65
USP53-207ENST00000510852 FPGT-TNNI3KV9GXZ4 949 aa10.98□□□□□ -0.65
USP53-207ENST00000510852 ANKRD31Q8N7Z5 1873 aa10.98□□□□□ -0.65
USP53-207ENST00000510852 C10orf71Q711Q0 1435 aa10.98□□□□□ -0.65
USP53-207ENST00000510852 CCDC85CA6NKD9 419 aa10.97□□□□□ -0.65
USP53-207ENST00000510852 TOR1BO14657 336 aa10.97□□□□□ -0.65
USP53-207ENST00000510852 MYCLP1P12525 358 aaPredicted RBP10.97□□□□□ -0.65
USP53-207ENST00000510852 GRM1Q13255 1194 aa10.97□□□□□ -0.65
USP53-207ENST00000510852 LAMC2Q13753 1193 aa10.97□□□□□ -0.65
USP53-207ENST00000510852 VGLL2Q8N8G2 317 aa10.97□□□□□ -0.65
USP53-207ENST00000510852 SCLT1Q96NL6 688 aa10.97□□□□□ -0.65
USP53-207ENST00000510852 CCDC8Q9H0W5 538 aaPredicted RBP10.97□□□□□ -0.65
USP53-207ENST00000510852 GPR108Q9NPR9 543 aa10.97□□□□□ -0.65
USP53-207ENST00000510852 VTI1BQ9UEU0 232 aa10.97□□□□□ -0.65
USP53-207ENST00000510852 SALL3Q9BXA9 1300 aa10.97□□□□□ -0.65
USP53-207ENST00000510852 IQCA1LA6NCM1 817 aa10.97□□□□□ -0.65
USP53-207ENST00000510852 H0YIN7 160 aa10.97□□□□□ -0.65
USP53-207ENST00000510852 SGTAO43765 313 aa10.97□□□□□ -0.65
USP53-207ENST00000510852 CLDN10P78369 228 aa10.97□□□□□ -0.65
USP53-207ENST00000510852 CHRNDQ07001 517 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms