RNA–Protein interactions for RNA: ENST00000507449.1

LSM6-205, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 3

Gene LSM6, Length 371 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-205ENST00000507449 ZSWIM2Q8NEG5 633 aa5.11□□□□□ -1.59
LSM6-205ENST00000507449 DSCC1Q9BVC3 393 aa5.11□□□□□ -1.59
LSM6-205ENST00000507449 PIM2Q9P1W9 311 aa5.11□□□□□ -1.59
LSM6-205ENST00000507449 GPR55Q9Y2T6 319 aaPredicted RBP5.11□□□□□ -1.59
LSM6-205ENST00000507449 NOP56O00567 594 aaKnown RBP5.1□□□□□ -1.59
LSM6-205ENST00000507449 CYP26A1O43174 497 aa5.1□□□□□ -1.59
LSM6-205ENST00000507449 PRODHO43272 600 aa5.1□□□□□ -1.59
LSM6-205ENST00000507449 DLX3O60479 287 aa5.1□□□□□ -1.59
LSM6-205ENST00000507449 FGFR1P11362 822 aa5.1□□□□□ -1.59
LSM6-205ENST00000507449 PABPC1P11940 636 aaKnown RBP5.1□□□□□ -1.59
LSM6-205ENST00000507449 FOSL1P15407 271 aa5.1□□□□□ -1.59
LSM6-205ENST00000507449 GFRA1P56159 465 aa5.1□□□□□ -1.59
LSM6-205ENST00000507449 DPY19L1Q2PZI1 675 aa5.1□□□□□ -1.59
LSM6-205ENST00000507449 C16orf86Q6ZW13 317 aa5.1□□□□□ -1.59
LSM6-205ENST00000507449 ZNF655Q8N720 491 aaPredicted RBP5.1□□□□□ -1.59
LSM6-205ENST00000507449 ENOX1Q8TC92 643 aaKnown RBP5.1□□□□□ -1.59
LSM6-205ENST00000507449 NETO1Q8TDF5 533 aa5.1□□□□□ -1.59
LSM6-205ENST00000507449 TCTN2Q96GX1 697 aa5.1□□□□□ -1.59
LSM6-205ENST00000507449 C1orf159Q96HA4 380 aa5.1□□□□□ -1.59
LSM6-205ENST00000507449 IER2Q9BTL4 223 aa5.1□□□□□ -1.59
LSM6-205ENST00000507449 PITPNM2Q9BZ72 1349 aa5.1□□□□□ -1.59
LSM6-205ENST00000507449 NKX2-4Q9H2Z4 354 aa5.1□□□□□ -1.59
LSM6-205ENST00000507449 WDR3Q9UNX4 943 aaKnown RBP eCLIP5.1□□□□□ -1.59
LSM6-205ENST00000507449 MRPS23Q9Y3D9 190 aaKnown RBP5.1□□□□□ -1.59
LSM6-205ENST00000507449 OAS3Q9Y6K5 1087 aaKnown RBP5.1□□□□□ -1.59
LSM6-205ENST00000507449 TRBV23-1A0A0A0MS06 115 aa5.09□□□□□ -1.59
LSM6-205ENST00000507449 ASMTLO95671 621 aa5.09□□□□□ -1.59
LSM6-205ENST00000507449 GSNP06396 782 aa5.09□□□□□ -1.59
LSM6-205ENST00000507449 IFNGR1P15260 489 aa5.09□□□□□ -1.59
LSM6-205ENST00000507449 CANXP27824 592 aaKnown RBP5.09□□□□□ -1.59
LSM6-205ENST00000507449 CLCN7P51798 805 aa5.09□□□□□ -1.59
LSM6-205ENST00000507449 CBX2Q14781 532 aaPredicted RBP5.09□□□□□ -1.59
LSM6-205ENST00000507449 IFI16Q16666 785 aaKnown RBP5.09□□□□□ -1.59
LSM6-205ENST00000507449 MSMPQ1L6U9 139 aa5.09□□□□□ -1.59
LSM6-205ENST00000507449 PRSS53Q2L4Q9 553 aa5.09□□□□□ -1.59
LSM6-205ENST00000507449 DENND5AQ6IQ26 1287 aa5.09□□□□□ -1.59
LSM6-205ENST00000507449 POMZP3Q6PJE2 187 aa5.09□□□□□ -1.59
LSM6-205ENST00000507449 ARHGAP27Q6ZUM4 889 aa5.09□□□□□ -1.59
LSM6-205ENST00000507449 USHBP1Q8N6Y0 703 aa5.09□□□□□ -1.59
LSM6-205ENST00000507449 TMEM145Q8NBT3 493 aa5.09□□□□□ -1.59
LSM6-205ENST00000507449 UBE2FQ969M7 185 aa5.09□□□□□ -1.59
LSM6-205ENST00000507449 FCRL3Q96P31 734 aaPredicted RBP5.09□□□□□ -1.59
LSM6-205ENST00000507449 SLC26A8Q96RN1 970 aa5.09□□□□□ -1.59
LSM6-205ENST00000507449 DHRS4Q9BTZ2 278 aa5.09□□□□□ -1.59
LSM6-205ENST00000507449 SLC12A9Q9BXP2 914 aa5.09□□□□□ -1.59
LSM6-205ENST00000507449 ATP13A1Q9HD20 1204 aa5.09□□□□□ -1.59
LSM6-205ENST00000507449 GPATCH2Q9NW75 528 aa5.09□□□□□ -1.59
LSM6-205ENST00000507449 ZSWIM5Q9P217 1185 aa5.09□□□□□ -1.59
LSM6-205ENST00000507449 SF3B6Q9Y3B4 125 aaKnown RBP5.09□□□□□ -1.59
LSM6-205ENST00000507449 CD2APQ9Y5K6 639 aa5.09□□□□□ -1.59
LSM6-205ENST00000507449 BLACEA4D250 179 aa5.08□□□□□ -1.6
LSM6-205ENST00000507449 STXBP3O00186 592 aa5.08□□□□□ -1.6
LSM6-205ENST00000507449 ARNTLO00327 626 aa5.08□□□□□ -1.6
LSM6-205ENST00000507449 ZNF205O95201 554 aa5.08□□□□□ -1.6
LSM6-205ENST00000507449 ESR1P03372 595 aa5.08□□□□□ -1.6
LSM6-205ENST00000507449 SCG5P05408 212 aa5.08□□□□□ -1.6
LSM6-205ENST00000507449 CD3EP07766 207 aa5.08□□□□□ -1.6
LSM6-205ENST00000507449 C6orf222P0C671 652 aaPredicted RBP5.08□□□□□ -1.6
LSM6-205ENST00000507449 VAV1P15498 845 aa5.08□□□□□ -1.6
LSM6-205ENST00000507449 TPP2P29144 1249 aaPredicted RBP5.08□□□□□ -1.6
LSM6-205ENST00000507449 BMP8BP34820 402 aa5.08□□□□□ -1.6
LSM6-205ENST00000507449 CD97P48960 835 aa5.08□□□□□ -1.6
LSM6-205ENST00000507449 AMPD2Q01433 879 aa5.08□□□□□ -1.6
LSM6-205ENST00000507449 NTRK3Q16288 839 aa5.08□□□□□ -1.6
LSM6-205ENST00000507449 CLEC16AQ2KHT3 1053 aa5.08□□□□□ -1.6
LSM6-205ENST00000507449 ZC3H12BQ5HYM0 836 aaKnown RBP5.08□□□□□ -1.6
LSM6-205ENST00000507449 RTP2Q5QGT7 225 aa5.08□□□□□ -1.6
LSM6-205ENST00000507449 SLC35F1Q5T1Q4 408 aa5.08□□□□□ -1.6
LSM6-205ENST00000507449 KRTAP5-3Q6L8H2 238 aa5.08□□□□□ -1.6
LSM6-205ENST00000507449 NSMFQ6X4W1 530 aa5.08□□□□□ -1.6
LSM6-205ENST00000507449 THAP5Q7Z6K1 395 aa5.08□□□□□ -1.6
LSM6-205ENST00000507449 WFDC3Q8IUB2 231 aa5.08□□□□□ -1.6
LSM6-205ENST00000507449 CRACR2BQ8N4Y2 399 aaPredicted RBP5.08□□□□□ -1.6
LSM6-205ENST00000507449 KREMEN2Q8NCW0 462 aa5.08□□□□□ -1.6
LSM6-205ENST00000507449 COPS5Q92905 334 aa5.08□□□□□ -1.6
LSM6-205ENST00000507449 CLUHP3Q96NS8 147 aa5.08□□□□□ -1.6
LSM6-205ENST00000507449 ASCC2Q9H1I8 757 aaPredicted RBP5.08□□□□□ -1.6
LSM6-205ENST00000507449 TRIT1Q9H3H1 467 aaKnown RBP5.08□□□□□ -1.6
LSM6-205ENST00000507449 NCOA5Q9HCD5 579 aaKnown RBP5.08□□□□□ -1.6
LSM6-205ENST00000507449 CYP26B1Q9NR63 512 aa5.08□□□□□ -1.6
LSM6-205ENST00000507449 TMEM82A0PJX8 343 aa5.07□□□□□ -1.6
LSM6-205ENST00000507449 AURKAO14965 403 aa5.07□□□□□ -1.6
LSM6-205ENST00000507449 SYPP08247 313 aa5.07□□□□□ -1.6
LSM6-205ENST00000507449 SNRPB2P08579 225 aaKnown RBP5.07□□□□□ -1.6
LSM6-205ENST00000507449 HOXC12P31275 282 aa5.07□□□□□ -1.6
LSM6-205ENST00000507449 CD96P40200 585 aa5.07□□□□□ -1.6
LSM6-205ENST00000507449 CEBPAP49715 358 aaPredicted RBP5.07□□□□□ -1.6
LSM6-205ENST00000507449 POU4F1Q01851 419 aa5.07□□□□□ -1.6
LSM6-205ENST00000507449 SCRN1Q12765 414 aa5.07□□□□□ -1.6
LSM6-205ENST00000507449 MAP4K2Q12851 820 aa5.07□□□□□ -1.6
LSM6-205ENST00000507449 C21orf62-AS1Q17RA5 79 aa5.07□□□□□ -1.6
LSM6-205ENST00000507449 DALRD3Q5D0E6 543 aaKnown RBP5.07□□□□□ -1.6
LSM6-205ENST00000507449 SCUBE1Q8IWY4 988 aa5.07□□□□□ -1.6
LSM6-205ENST00000507449 LINC00116Q8NCU8 138 aa5.07□□□□□ -1.6
LSM6-205ENST00000507449 FEZ1Q99689 392 aa5.07□□□□□ -1.6
LSM6-205ENST00000507449 CDC6Q99741 560 aa5.07□□□□□ -1.6
LSM6-205ENST00000507449 FOXP3Q9BZS1 431 aa5.07□□□□□ -1.6
LSM6-205ENST00000507449 ZNF281Q9Y2X9 895 aa5.07□□□□□ -1.6
LSM6-205ENST00000507449 PCDHA11Q9Y5I1 949 aa5.07□□□□□ -1.6
LSM6-205ENST00000507449 SNX11Q9Y5W9 270 aa5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms