RNA–Protein interactions for RNA: ENST00000490690.1

SHROOM3-209, Transcript of shroom family member 3, humanhuman

TSL 4

Gene SHROOM3, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-209ENST00000490690 MTMR8Q96EF0 704 aa23■■□□□ 1.27
SHROOM3-209ENST00000490690 AMNQ9BXJ7 453 aa23■■□□□ 1.27
SHROOM3-209ENST00000490690 JMJD4Q9H9V9 463 aa23■■□□□ 1.27
SHROOM3-209ENST00000490690 ZNF214Q9UL59 606 aaPredicted RBP23■■□□□ 1.27
SHROOM3-209ENST00000490690 PNMA6FA0A0J9YX94 578 aa22.99■■□□□ 1.27
SHROOM3-209ENST00000490690 IFNAR1P17181 557 aa22.99■■□□□ 1.27
SHROOM3-209ENST00000490690 FCGRTP55899 365 aa22.99■■□□□ 1.27
SHROOM3-209ENST00000490690 TMEM132BQ14DG7 1078 aa22.99■■□□□ 1.27
SHROOM3-209ENST00000490690 SNRNP48Q6IEG0 339 aaKnown RBP22.99■■□□□ 1.27
SHROOM3-209ENST00000490690 TEX2Q8IWB9 1127 aa22.99■■□□□ 1.27
SHROOM3-209ENST00000490690 CHST13Q8NET6 341 aa22.99■■□□□ 1.27
SHROOM3-209ENST00000490690 REPS2Q8NFH8 660 aa22.99■■□□□ 1.27
SHROOM3-209ENST00000490690 RNF26Q9BY78 433 aaPredicted RBP22.99■■□□□ 1.27
SHROOM3-209ENST00000490690 BTBD7Q9P203 1132 aa22.99■■□□□ 1.27
SHROOM3-209ENST00000490690 CCPG1Q9ULG6 757 aa22.99■■□□□ 1.27
SHROOM3-209ENST00000490690 STRNO43815 780 aa22.98■■□□□ 1.27
SHROOM3-209ENST00000490690 HOXD10P28358 340 aa22.98■■□□□ 1.27
SHROOM3-209ENST00000490690 LACTBP83111 547 aaPredicted RBP22.98■■□□□ 1.27
SHROOM3-209ENST00000490690 FBXO11Q86XK2 927 aa22.98■■□□□ 1.27
SHROOM3-209ENST00000490690 RAB11FIP4Q86YS3 637 aa22.98■■□□□ 1.27
SHROOM3-209ENST00000490690 CPXCR1Q8N123 301 aa22.98■■□□□ 1.27
SHROOM3-209ENST00000490690 GTF3C6Q969F1 213 aa22.98■■□□□ 1.27
SHROOM3-209ENST00000490690 VAT1LQ9HCJ6 419 aa22.98■■□□□ 1.27
SHROOM3-209ENST00000490690 IVNS1ABPQ9Y6Y0 642 aa22.98■■□□□ 1.27
SHROOM3-209ENST00000490690 CNMDO75829 334 aa22.97■■□□□ 1.27
SHROOM3-209ENST00000490690 PLEKHA8P1O95397 391 aa22.97■■□□□ 1.27
SHROOM3-209ENST00000490690 CDC27P30260 824 aa22.97■■□□□ 1.27
SHROOM3-209ENST00000490690 ADD1P35611 737 aaKnown RBP22.97■■□□□ 1.27
SHROOM3-209ENST00000490690 CCT2P78371 535 aaKnown RBP22.97■■□□□ 1.27
SHROOM3-209ENST00000490690 STK3Q13188 491 aa22.97■■□□□ 1.27
SHROOM3-209ENST00000490690 CCDC174Q6PII3 467 aa22.97■■□□□ 1.27
SHROOM3-209ENST00000490690 NOL8Q76FK4 1167 aaKnown RBP22.97■■□□□ 1.27
SHROOM3-209ENST00000490690 SRBD1Q8N5C6 995 aaKnown RBP22.97■■□□□ 1.27
SHROOM3-209ENST00000490690 COA7Q96BR5 231 aa22.97■■□□□ 1.27
SHROOM3-209ENST00000490690 RAVER2Q9HCJ3 691 aaKnown RBP22.97■■□□□ 1.27
SHROOM3-209ENST00000490690 TXNRD2Q9NNW7 524 aa22.97■■□□□ 1.27
SHROOM3-209ENST00000490690 ABCB11O95342 1321 aa22.97■■□□□ 1.27
SHROOM3-209ENST00000490690 A0A0G2JMZ2 1700 aa22.96■■□□□ 1.27
SHROOM3-209ENST00000490690 ME3Q16798 604 aa22.96■■□□□ 1.27
SHROOM3-209ENST00000490690 QRICH1Q2TAL8 776 aa22.96■■□□□ 1.27
SHROOM3-209ENST00000490690 NCAPG2Q86XI2 1143 aa22.96■■□□□ 1.27
SHROOM3-209ENST00000490690 HOMER1Q86YM7 354 aa22.96■■□□□ 1.27
SHROOM3-209ENST00000490690 ABRAQ8N0Z2 381 aa22.96■■□□□ 1.27
SHROOM3-209ENST00000490690 FAM177A1Q8N128 213 aaPredicted RBP22.96■■□□□ 1.27
SHROOM3-209ENST00000490690 SAMD3Q8N6K7 520 aa22.96■■□□□ 1.27
SHROOM3-209ENST00000490690 CCDC12Q8WUD4 166 aaPredicted RBP22.96■■□□□ 1.27
SHROOM3-209ENST00000490690 WASF1Q92558 559 aa22.96■■□□□ 1.27
SHROOM3-209ENST00000490690 LLPHQ9BRT6 129 aaKnown RBP22.96■■□□□ 1.27
SHROOM3-209ENST00000490690 MOV10L1Q9BXT6 1211 aaKnown RBP22.96■■□□□ 1.27
SHROOM3-209ENST00000490690 FAM217BQ9NTX9 383 aaPredicted RBP22.96■■□□□ 1.27
SHROOM3-209ENST00000490690 MRPL11Q9Y3B7 192 aaKnown RBP22.96■■□□□ 1.27
SHROOM3-209ENST00000490690 CNTNAP5Q8WYK1 1306 aa22.96■■□□□ 1.27
SHROOM3-209ENST00000490690 PRPF3O43395 683 aaKnown RBP22.95■■□□□ 1.26
SHROOM3-209ENST00000490690 CYTH3O43739 400 aa22.95■■□□□ 1.26
SHROOM3-209ENST00000490690 PRMT2P55345 433 aa22.95■■□□□ 1.26
SHROOM3-209ENST00000490690 SSRP1Q08945 709 aaKnown RBP22.95■■□□□ 1.26
SHROOM3-209ENST00000490690 SCRN1Q12765 414 aa22.95■■□□□ 1.26
SHROOM3-209ENST00000490690 DHX30Q7L2E3 1194 aaKnown RBP eCLIP22.95■■□□□ 1.26
SHROOM3-209ENST00000490690 MCF2L2Q86YR7 1114 aa22.95■■□□□ 1.26
SHROOM3-209ENST00000490690 ZNF296Q8WUU4 475 aaPredicted RBP22.95■■□□□ 1.26
SHROOM3-209ENST00000490690 SOCS4Q8WXH5 440 aa22.95■■□□□ 1.26
SHROOM3-209ENST00000490690 SNX21Q969T3 373 aa22.95■■□□□ 1.26
SHROOM3-209ENST00000490690 PIGSQ96S52 555 aa22.95■■□□□ 1.26
SHROOM3-209ENST00000490690 ACAD9Q9H845 621 aa22.95■■□□□ 1.26
SHROOM3-209ENST00000490690 SLC5A4Q9NY91 659 aa22.95■■□□□ 1.26
SHROOM3-209ENST00000490690 KIF3AQ9Y496 699 aa22.95■■□□□ 1.26
SHROOM3-209ENST00000490690 RLFQ13129 1914 aa22.94■■□□□ 1.26
SHROOM3-209ENST00000490690 CEP350Q5VT06 3117 aa22.94■■□□□ 1.26
SHROOM3-209ENST00000490690 ZNF536O15090 1300 aa22.94■■□□□ 1.26
SHROOM3-209ENST00000490690 STK36Q9NRP7 1315 aa22.94■■□□□ 1.26
SHROOM3-209ENST00000490690 TNPO2O14787 897 aaKnown RBP22.94■■□□□ 1.26
SHROOM3-209ENST00000490690 ERCC3P19447 782 aa22.94■■□□□ 1.26
SHROOM3-209ENST00000490690 PPP1R18Q6NYC8 613 aa22.94■■□□□ 1.26
SHROOM3-209ENST00000490690 PLEKHH3Q7Z736 793 aa22.94■■□□□ 1.26
SHROOM3-209ENST00000490690 GLT8D2Q9H1C3 349 aa22.94■■□□□ 1.26
SHROOM3-209ENST00000490690 CPVLQ9H3G5 476 aa22.94■■□□□ 1.26
SHROOM3-209ENST00000490690 MAP3K20Q9NYL2 800 aaKnown RBP22.94■■□□□ 1.26
SHROOM3-209ENST00000490690 FOXN1O15353 648 aa22.93■■□□□ 1.26
SHROOM3-209ENST00000490690 DEXIO95424 95 aa22.93■■□□□ 1.26
SHROOM3-209ENST00000490690 FMNL1O95466 1100 aaPredicted RBP22.93■■□□□ 1.26
SHROOM3-209ENST00000490690 HSPA8P11142 646 aaKnown RBP22.93■■□□□ 1.26
SHROOM3-209ENST00000490690 FCER1AP12319 257 aa22.93■■□□□ 1.26
SHROOM3-209ENST00000490690 ALAS1P13196 640 aa22.93■■□□□ 1.26
SHROOM3-209ENST00000490690 XBP1P17861 261 aa22.93■■□□□ 1.26
SHROOM3-209ENST00000490690 HMGN5P82970 282 aaKnown RBP22.93■■□□□ 1.26
SHROOM3-209ENST00000490690 FUT2Q10981 343 aa22.93■■□□□ 1.26
SHROOM3-209ENST00000490690 KCTD2Q14681 263 aa22.93■■□□□ 1.26
SHROOM3-209ENST00000490690 NTRK3Q16288 839 aa22.93■■□□□ 1.26
SHROOM3-209ENST00000490690 Q3C1V9 767 aa22.93■■□□□ 1.26
SHROOM3-209ENST00000490690 WDR78Q5VTH9 848 aa22.93■■□□□ 1.26
SHROOM3-209ENST00000490690 NBPF11Q86T75 865 aa22.93■■□□□ 1.26
SHROOM3-209ENST00000490690 HSCBQ8IWL3 235 aa22.93■■□□□ 1.26
SHROOM3-209ENST00000490690 CCDC82Q8N4S0 544 aa22.93■■□□□ 1.26
SHROOM3-209ENST00000490690 TRERF1Q96PN7 1200 aa22.93■■□□□ 1.26
SHROOM3-209ENST00000490690 LARP6Q9BRS8 491 aaKnown RBP22.93■■□□□ 1.26
SHROOM3-209ENST00000490690 R3HDMLQ9H3Y0 253 aa22.93■■□□□ 1.26
SHROOM3-209ENST00000490690 NCOA5Q9HCD5 579 aaKnown RBP22.93■■□□□ 1.26
SHROOM3-209ENST00000490690 RNF146Q9NTX7 359 aa22.93■■□□□ 1.26
SHROOM3-209ENST00000490690 PCDHA1Q9Y5I3 950 aa22.93■■□□□ 1.26
SHROOM3-209ENST00000490690 PARP14Q460N5 1801 aa22.93■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms