RNA–Protein interactions for RNA: ENST00000482558.5

SNX13-208, Transcript of sorting nexin 13, humanhuman

TSL 2

Gene SNX13, Length 1,139 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-208ENST00000482558 ANKRD1Q15327 319 aa9.12□□□□□ -0.95
SNX13-208ENST00000482558 LRRFIP1Q32MZ4 808 aaKnown RBP9.12□□□□□ -0.95
SNX13-208ENST00000482558 IGF2-ASQ6U949 168 aa9.12□□□□□ -0.95
SNX13-208ENST00000482558 MCF2L2Q86YR7 1114 aa9.12□□□□□ -0.95
SNX13-208ENST00000482558 RPUSD2Q8IZ73 545 aaKnown RBP9.12□□□□□ -0.95
SNX13-208ENST00000482558 DDX17Q92841 729 aaKnown RBP9.12□□□□□ -0.95
SNX13-208ENST00000482558 CHMP4CQ96CF2 233 aa9.12□□□□□ -0.95
SNX13-208ENST00000482558 KAZALD1Q96I82 304 aa9.12□□□□□ -0.95
SNX13-208ENST00000482558 TMX3Q96JJ7 454 aa9.12□□□□□ -0.95
SNX13-208ENST00000482558 LSG1Q9H089 658 aaKnown RBP9.12□□□□□ -0.95
SNX13-208ENST00000482558 SH2B1Q9NRF2 756 aaPredicted RBP9.12□□□□□ -0.95
SNX13-208ENST00000482558 CWC25Q9NXE8 425 aaPredicted RBP9.12□□□□□ -0.95
SNX13-208ENST00000482558 HMG20BQ9P0W2 317 aa9.12□□□□□ -0.95
SNX13-208ENST00000482558 G3BP2Q9UN86 482 aaKnown RBP9.12□□□□□ -0.95
SNX13-208ENST00000482558 PRKAB1Q9Y478 270 aa9.12□□□□□ -0.95
SNX13-208ENST00000482558 ATP6V1DQ9Y5K8 247 aa9.12□□□□□ -0.95
SNX13-208ENST00000482558 USP16Q9Y5T5 823 aa9.12□□□□□ -0.95
SNX13-208ENST00000482558 TNS2Q63HR2 1409 aa9.12□□□□□ -0.95
SNX13-208ENST00000482558 PAPPAQ13219 1627 aa9.12□□□□□ -0.95
SNX13-208ENST00000482558 A0A087WZG4 1122 aa9.11□□□□□ -0.95
SNX13-208ENST00000482558 PRAMEF22A3QJZ6 481 aa9.11□□□□□ -0.95
SNX13-208ENST00000482558 PAX4O43316 350 aa9.11□□□□□ -0.95
SNX13-208ENST00000482558 SASH1O94885 1247 aa9.11□□□□□ -0.95
SNX13-208ENST00000482558 STARD3NLO95772 234 aa9.11□□□□□ -0.95
SNX13-208ENST00000482558 MBD3O95983 291 aa9.11□□□□□ -0.95
SNX13-208ENST00000482558 IREB2P48200 963 aaKnown RBP9.11□□□□□ -0.95
SNX13-208ENST00000482558 PLCB3Q01970 1234 aa9.11□□□□□ -0.95
SNX13-208ENST00000482558 DNM1Q05193 864 aaKnown RBP9.11□□□□□ -0.95
SNX13-208ENST00000482558 CCINQ13939 588 aa9.11□□□□□ -0.95
SNX13-208ENST00000482558 KRT32Q14532 448 aa9.11□□□□□ -0.95
SNX13-208ENST00000482558 HSP90AB3PQ58FF7 597 aa9.11□□□□□ -0.95
SNX13-208ENST00000482558 VPS53Q5VIR6 699 aa9.11□□□□□ -0.95
SNX13-208ENST00000482558 TSHZ3Q63HK5 1081 aa9.11□□□□□ -0.95
SNX13-208ENST00000482558 PRR23CQ6ZRP0 262 aa9.11□□□□□ -0.95
SNX13-208ENST00000482558 UNC5CLQ8IV45 518 aa9.11□□□□□ -0.95
SNX13-208ENST00000482558 PNMA5Q96PV4 448 aa9.11□□□□□ -0.95
SNX13-208ENST00000482558 CITED4Q96RK1 184 aa9.11□□□□□ -0.95
SNX13-208ENST00000482558 ALDH8A1Q9H2A2 487 aaPredicted RBP9.11□□□□□ -0.95
SNX13-208ENST00000482558 CCDC87Q9NVE4 849 aa9.11□□□□□ -0.95
SNX13-208ENST00000482558 FAM13BQ9NYF5 915 aa9.11□□□□□ -0.95
SNX13-208ENST00000482558 TMOD3Q9NYL9 352 aa9.11□□□□□ -0.95
SNX13-208ENST00000482558 LIMCH1Q9UPQ0 1083 aa9.11□□□□□ -0.95
SNX13-208ENST00000482558 ABCA3Q99758 1704 aa9.11□□□□□ -0.95
SNX13-208ENST00000482558 WDR33Q9C0J8 1336 aaKnown RBP9.1□□□□□ -0.95
SNX13-208ENST00000482558 ARFGEF2Q9Y6D5 1785 aa9.1□□□□□ -0.95
SNX13-208ENST00000482558 CIAO1O76071 339 aa9.1□□□□□ -0.95
SNX13-208ENST00000482558 MICAL2O94851 1124 aa9.1□□□□□ -0.95
SNX13-208ENST00000482558 MAP3K6O95382 1288 aa9.1□□□□□ -0.95
SNX13-208ENST00000482558 PCSK2P16519 638 aa9.1□□□□□ -0.95
SNX13-208ENST00000482558 IL15P40933 162 aaPredicted RBP9.1□□□□□ -0.95
SNX13-208ENST00000482558 TXKP42681 527 aa9.1□□□□□ -0.95
SNX13-208ENST00000482558 IDH3AP50213 366 aa9.1□□□□□ -0.95
SNX13-208ENST00000482558 CWC27Q6UX04 472 aaKnown RBP9.1□□□□□ -0.95
SNX13-208ENST00000482558 EDEM1Q92611 657 aa9.1□□□□□ -0.95
SNX13-208ENST00000482558 PCMTD2Q9NV79 361 aa9.1□□□□□ -0.95
SNX13-208ENST00000482558 DDX41Q9UJV9 622 aaKnown RBP9.1□□□□□ -0.95
SNX13-208ENST00000482558 CYP46A1Q9Y6A2 500 aa9.1□□□□□ -0.95
SNX13-208ENST00000482558 LRP6O75581 1613 aa9.09□□□□□ -0.95
SNX13-208ENST00000482558 CCDC171Q6TFL3 1326 aa9.09□□□□□ -0.95
SNX13-208ENST00000482558 FGRP09769 529 aa9.09□□□□□ -0.95
SNX13-208ENST00000482558 MZF1P28698 734 aaPredicted RBP9.09□□□□□ -0.95
SNX13-208ENST00000482558 USP5P45974 858 aa9.09□□□□□ -0.95
SNX13-208ENST00000482558 RFX5P48382 616 aaPredicted RBP9.09□□□□□ -0.95
SNX13-208ENST00000482558 CASP7P55210 303 aa9.09□□□□□ -0.95
SNX13-208ENST00000482558 PTPN12Q05209 780 aaKnown RBP9.09□□□□□ -0.95
SNX13-208ENST00000482558 DSC3Q14574 896 aa9.09□□□□□ -0.95
SNX13-208ENST00000482558 KIF6Q6ZMV9 814 aa9.09□□□□□ -0.95
SNX13-208ENST00000482558 UBE3BQ7Z3V4 1068 aa9.09□□□□□ -0.95
SNX13-208ENST00000482558 FAM35AQ86V20 835 aa9.09□□□□□ -0.95
SNX13-208ENST00000482558 CKAP2LQ8IYA6 745 aa9.09□□□□□ -0.95
SNX13-208ENST00000482558 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.09□□□□□ -0.95
SNX13-208ENST00000482558 TTC9Q92623 222 aa9.09□□□□□ -0.95
SNX13-208ENST00000482558 ANP32BQ92688 251 aaKnown RBP9.09□□□□□ -0.95
SNX13-208ENST00000482558 MAP4K1Q92918 833 aa9.09□□□□□ -0.95
SNX13-208ENST00000482558 SYAP1Q96A49 352 aaPredicted RBP9.09□□□□□ -0.95
SNX13-208ENST00000482558 EAF2Q96CJ1 260 aaPredicted RBP9.09□□□□□ -0.95
SNX13-208ENST00000482558 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.09□□□□□ -0.953e-6■■■■■ 30.2
SNX13-208ENST00000482558 POLIQ9UNA4 740 aa9.09□□□□□ -0.95
SNX13-208ENST00000482558 PA2G4Q9UQ80 394 aaKnown RBP9.09□□□□□ -0.95
SNX13-208ENST00000482558 SNX14Q9Y5W7 946 aa9.09□□□□□ -0.95
SNX13-208ENST00000482558 DDX49Q9Y6V7 483 aaKnown RBP9.09□□□□□ -0.95
SNX13-208ENST00000482558 AFDNP55196 1824 aaKnown RBP9.09□□□□□ -0.95
SNX13-208ENST00000482558 KCPQ6ZWJ8 1503 aa9.09□□□□□ -0.95
SNX13-208ENST00000482558 COL14A1Q05707 1796 aaKnown RBP9.09□□□□□ -0.95
SNX13-208ENST00000482558 ZNF335Q9H4Z2 1342 aaPredicted RBP9.08□□□□□ -0.96
SNX13-208ENST00000482558 GLI3P10071 1580 aa9.08□□□□□ -0.96
SNX13-208ENST00000482558 A0A0U1RQG5 324 aaPredicted RBP9.08□□□□□ -0.96
SNX13-208ENST00000482558 NFKB1P19838 968 aa9.08□□□□□ -0.96
SNX13-208ENST00000482558 KCNJ4P48050 445 aa9.08□□□□□ -0.96
SNX13-208ENST00000482558 ARSDP51689 593 aa9.08□□□□□ -0.96
SNX13-208ENST00000482558 TBX4P57082 545 aa9.08□□□□□ -0.96
SNX13-208ENST00000482558 EHHADHQ08426 723 aa9.08□□□□□ -0.96
SNX13-208ENST00000482558 GRIK5Q16478 980 aa9.08□□□□□ -0.96
SNX13-208ENST00000482558 TNNI3KQ59H18 835 aa9.08□□□□□ -0.96
SNX13-208ENST00000482558 GPR152Q8TDT2 470 aa9.08□□□□□ -0.96
SNX13-208ENST00000482558 MEGF10Q96KG7 1140 aa9.08□□□□□ -0.96
SNX13-208ENST00000482558 DMRTB1Q96MA1 342 aa9.08□□□□□ -0.96
SNX13-208ENST00000482558 TTC14Q96N46 770 aa9.08□□□□□ -0.96
SNX13-208ENST00000482558 FSD1Q9BTV5 496 aa9.08□□□□□ -0.96
SNX13-208ENST00000482558 PLA2G12BQ9BX93 195 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms