RNA–Protein interactions for RNA: ENST00000478916.5

SYNE1-224, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 7,780 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-224ENST00000478916 APBA1Q02410 837 aa9.68□□□□□ -0.86
SYNE1-224ENST00000478916 RAD51AP2Q09MP3 1159 aa9.68□□□□□ -0.86
SYNE1-224ENST00000478916 PSMB7Q99436 277 aa9.68□□□□□ -0.86
SYNE1-224ENST00000478916 CARD10Q9BWT7 1032 aa9.68□□□□□ -0.86
SYNE1-224ENST00000478916 KCNH3Q9ULD8 1083 aa9.68□□□□□ -0.86
SYNE1-224ENST00000478916 ZMYM4Q5VZL5 1548 aa9.67□□□□□ -0.86
SYNE1-224ENST00000478916 LOC102724428A0A0B4J2F2 783 aa9.67□□□□□ -0.86
SYNE1-224ENST00000478916 PPEF1O14829 653 aaPredicted RBP9.67□□□□□ -0.86
SYNE1-224ENST00000478916 PCCAP05165 728 aaPredicted RBP9.67□□□□□ -0.86
SYNE1-224ENST00000478916 SIK1P57059 783 aa9.67□□□□□ -0.86
SYNE1-224ENST00000478916 ZKSCAN8Q15776 578 aaPredicted RBP9.67□□□□□ -0.86
SYNE1-224ENST00000478916 LONRF2Q1L5Z9 754 aa9.67□□□□□ -0.86
SYNE1-224ENST00000478916 MCF2L2Q86YR7 1114 aa9.67□□□□□ -0.86
SYNE1-224ENST00000478916 PSPC1Q8WXF1 523 aaKnown RBP9.67□□□□□ -0.86
SYNE1-224ENST00000478916 GLG1Q92896 1179 aa9.67□□□□□ -0.86
SYNE1-224ENST00000478916 NT5C3AQ9H0P0 336 aa9.67□□□□□ -0.86
SYNE1-224ENST00000478916 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.67□□□□□ -0.86
SYNE1-224ENST00000478916 KDM3AQ9Y4C1 1321 aa9.67□□□□□ -0.86
SYNE1-224ENST00000478916 PALM3A6NDB9 673 aaPredicted RBP9.67□□□□□ -0.86
SYNE1-224ENST00000478916 NR1I2O75469 434 aa9.67□□□□□ -0.86
SYNE1-224ENST00000478916 ATP5JP18859 108 aa9.67□□□□□ -0.86
SYNE1-224ENST00000478916 GADL1Q6ZQY3 521 aa9.67□□□□□ -0.86
SYNE1-224ENST00000478916 MYCT1Q8N699 235 aa9.67□□□□□ -0.86
SYNE1-224ENST00000478916 MAGI2Q86UL8 1455 aa9.67□□□□□ -0.86
SYNE1-224ENST00000478916 MAP3K15Q6ZN16 1313 aa9.67□□□□□ -0.86
SYNE1-224ENST00000478916 CCT5P48643 541 aa9.67□□□□□ -0.86
SYNE1-224ENST00000478916 YWHAEP62258 255 aaKnown RBP9.67□□□□□ -0.86
SYNE1-224ENST00000478916 SYF2O95926 243 aaKnown RBP9.67□□□□□ -0.86
SYNE1-224ENST00000478916 MTX1Q13505 466 aa9.67□□□□□ -0.86
SYNE1-224ENST00000478916 TRIM58Q8NG06 486 aa9.67□□□□□ -0.86
SYNE1-224ENST00000478916 GRK7Q8WTQ7 553 aa9.67□□□□□ -0.86
SYNE1-224ENST00000478916 MLXIPQ9HAP2 919 aa9.67□□□□□ -0.86
SYNE1-224ENST00000478916 ATP8A2Q9NTI2 1148 aa9.67□□□□□ -0.86
SYNE1-224ENST00000478916 TYW1Q9NV66 732 aaKnown RBP9.67□□□□□ -0.86
SYNE1-224ENST00000478916 MRPL11Q9Y3B7 192 aaKnown RBP9.67□□□□□ -0.86
SYNE1-224ENST00000478916 SFMBT2Q5VUG0 894 aa9.67□□□□□ -0.86
SYNE1-224ENST00000478916 HAUS1Q96CS2 278 aa9.67□□□□□ -0.86
SYNE1-224ENST00000478916 CCDC51Q96ER9 411 aa9.67□□□□□ -0.86
SYNE1-224ENST00000478916 FAM227BQ96M60 508 aa9.67□□□□□ -0.86
SYNE1-224ENST00000478916 AMFRQ9UKV5 643 aa9.67□□□□□ -0.86
SYNE1-224ENST00000478916 XDHP47989 1333 aa9.67□□□□□ -0.86
SYNE1-224ENST00000478916 BCRP11274 1271 aa9.67□□□□□ -0.86
SYNE1-224ENST00000478916 IWS1Q96ST2 819 aa9.67□□□□□ -0.86
SYNE1-224ENST00000478916 ZBTB24O43167 697 aaPredicted RBP9.66□□□□□ -0.86
SYNE1-224ENST00000478916 GAS7O60861 476 aa9.66□□□□□ -0.86
SYNE1-224ENST00000478916 CRKLP46109 303 aaKnown RBP9.66□□□□□ -0.86
SYNE1-224ENST00000478916 POLE2P56282 527 aa9.66□□□□□ -0.86
SYNE1-224ENST00000478916 LONRF3Q496Y0 759 aa9.66□□□□□ -0.86
SYNE1-224ENST00000478916 CCDC197Q8NCU1 140 aa9.66□□□□□ -0.86
SYNE1-224ENST00000478916 CENPKQ9BS16 269 aa9.66□□□□□ -0.86
SYNE1-224ENST00000478916 ORC6Q9Y5N6 252 aa9.66□□□□□ -0.86
SYNE1-224ENST00000478916 TCP10L2B9ZVM9 353 aa9.66□□□□□ -0.86
SYNE1-224ENST00000478916 POLR2DO15514 142 aaKnown RBP9.66□□□□□ -0.86
SYNE1-224ENST00000478916 SGSM2O43147 1006 aa9.66□□□□□ -0.86
SYNE1-224ENST00000478916 ATICP31939 592 aa9.66□□□□□ -0.86
SYNE1-224ENST00000478916 PPP2R5AQ15172 486 aa9.66□□□□□ -0.86
SYNE1-224ENST00000478916 MMEL1Q495T6 779 aa9.66□□□□□ -0.86
SYNE1-224ENST00000478916 USPL1Q5W0Q7 1092 aa9.66□□□□□ -0.86
SYNE1-224ENST00000478916 NRBF2Q96F24 287 aa9.66□□□□□ -0.86
SYNE1-224ENST00000478916 SLF1Q9BQI6 1058 aa9.66□□□□□ -0.86
SYNE1-224ENST00000478916 IFIH1Q9BYX4 1025 aaKnown RBP9.66□□□□□ -0.86
SYNE1-224ENST00000478916 SART1O43290 800 aaKnown RBP9.66□□□□□ -0.86
SYNE1-224ENST00000478916 PRPF6O94906 941 aaKnown RBP9.66□□□□□ -0.86
SYNE1-224ENST00000478916 KLHL30Q0D2K2 578 aa9.66□□□□□ -0.86
SYNE1-224ENST00000478916 DCUN1D2Q6PH85 259 aa9.66□□□□□ -0.86
SYNE1-224ENST00000478916 NSMCE1Q8WV22 266 aa9.66□□□□□ -0.86
SYNE1-224ENST00000478916 N4BP2L2Q92802 583 aaPredicted RBP9.66□□□□□ -0.86
SYNE1-224ENST00000478916 USTQ9Y2C2 406 aa9.66□□□□□ -0.86
SYNE1-224ENST00000478916 BLMP54132 1417 aaPredicted RBP9.66□□□□□ -0.86
SYNE1-224ENST00000478916 RNASELQ05823 741 aaKnown RBP9.66□□□□□ -0.86
SYNE1-224ENST00000478916 PROCA1Q8NCQ7 364 aaPredicted RBP9.66□□□□□ -0.86
SYNE1-224ENST00000478916 LRRC8CQ8TDW0 803 aa9.66□□□□□ -0.86
SYNE1-224ENST00000478916 CERKLQ49MI3 558 aaPredicted RBP9.66□□□□□ -0.86
SYNE1-224ENST00000478916 JADE1Q6IE81 842 aa9.66□□□□□ -0.86
SYNE1-224ENST00000478916 KRT27Q7Z3Y8 459 aa9.66□□□□□ -0.86
SYNE1-224ENST00000478916 GDAP1L1Q96MZ0 367 aa9.66□□□□□ -0.86
SYNE1-224ENST00000478916 MRPL44Q9H9J2 332 aaKnown RBP9.66□□□□□ -0.86
SYNE1-224ENST00000478916 ZBTB12Q9Y330 459 aaPredicted RBP9.66□□□□□ -0.86
SYNE1-224ENST00000478916 SNX14Q9Y5W7 946 aa9.66□□□□□ -0.86
SYNE1-224ENST00000478916 ATP10DQ9P241 1426 aa9.66□□□□□ -0.86
SYNE1-224ENST00000478916 EEF1DP29692 281 aaKnown RBP9.66□□□□□ -0.86
SYNE1-224ENST00000478916 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.66□□□□□ -0.86
SYNE1-224ENST00000478916 RSAD2Q8WXG1 361 aa9.66□□□□□ -0.86
SYNE1-224ENST00000478916 UTP18Q9Y5J1 556 aaKnown RBP eCLIP9.66□□□□□ -0.86
SYNE1-224ENST00000478916 KMT5BQ4FZB7 885 aa9.65□□□□□ -0.86
SYNE1-224ENST00000478916 CTAGE3PQ8IX95 158 aa9.65□□□□□ -0.86
SYNE1-224ENST00000478916 CCDC124Q96CT7 223 aaKnown RBP9.65□□□□□ -0.86
SYNE1-224ENST00000478916 RIC8AQ9NPQ8 531 aa9.65□□□□□ -0.86
SYNE1-224ENST00000478916 TRPC6Q9Y210 931 aa9.65□□□□□ -0.86
SYNE1-224ENST00000478916 GCNT3O95395 438 aa9.65□□□□□ -0.86
SYNE1-224ENST00000478916 POLR2MP0CAP2 368 aa9.65□□□□□ -0.86
SYNE1-224ENST00000478916 HERC4Q5GLZ8 1057 aaPredicted RBP9.65□□□□□ -0.86
SYNE1-224ENST00000478916 CCDC138Q96M89 665 aa9.65□□□□□ -0.86
SYNE1-224ENST00000478916 ZSCAN10Q96SZ4 725 aaPredicted RBP9.65□□□□□ -0.86
SYNE1-224ENST00000478916 PER1O15534 1290 aaPredicted RBP9.65□□□□□ -0.86
SYNE1-224ENST00000478916 EXOC3O60645 756 aa9.65□□□□□ -0.86
SYNE1-224ENST00000478916 BTDP43251 543 aa9.65□□□□□ -0.86
SYNE1-224ENST00000478916 CCNA1P78396 465 aa9.65□□□□□ -0.86
SYNE1-224ENST00000478916 FAM47CQ5HY64 1035 aa9.65□□□□□ -0.86
SYNE1-224ENST00000478916 MAEAQ7L5Y9 396 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms