RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 LRRC10BA6NIK2 292 aa10.09□□□□□ -0.79
SYNE1-217ENST00000466159 USP17L5A8MUK1 530 aa10.09□□□□□ -0.79
SYNE1-217ENST00000466159 KCNJ18B7U540 433 aa10.09□□□□□ -0.79
SYNE1-217ENST00000466159 RIMBP2O15034 1052 aa10.09□□□□□ -0.79
SYNE1-217ENST00000466159 CCNT1O60563 726 aaKnown RBP10.09□□□□□ -0.79
SYNE1-217ENST00000466159 MFAP3LO75121 409 aa10.09□□□□□ -0.79
SYNE1-217ENST00000466159 PLCG2P16885 1265 aa10.09□□□□□ -0.79
SYNE1-217ENST00000466159 GTF2IP78347 998 aa10.09□□□□□ -0.79
SYNE1-217ENST00000466159 PICALMQ13492 652 aa10.09□□□□□ -0.79
SYNE1-217ENST00000466159 KCNJ12Q14500 433 aa10.09□□□□□ -0.79
SYNE1-217ENST00000466159 TCP11X2Q5H9J9 407 aa10.09□□□□□ -0.79
SYNE1-217ENST00000466159 CERS3Q8IU89 383 aa10.09□□□□□ -0.79
SYNE1-217ENST00000466159 PIGSQ96S52 555 aa10.09□□□□□ -0.79
SYNE1-217ENST00000466159 PODXL2Q9NZ53 605 aa10.09□□□□□ -0.79
SYNE1-217ENST00000466159 DDX41Q9UJV9 622 aaKnown RBP10.09□□□□□ -0.79
SYNE1-217ENST00000466159 GAKO14976 1311 aa10.09□□□□□ -0.79
SYNE1-217ENST00000466159 F8W031 263 aaPredicted RBP10.08□□□□□ -0.8
SYNE1-217ENST00000466159 RNF225M0QZC1 329 aaPredicted RBP10.08□□□□□ -0.8
SYNE1-217ENST00000466159 KLRC4O43908 158 aa10.08□□□□□ -0.8
SYNE1-217ENST00000466159 CASQ1P31415 396 aa10.08□□□□□ -0.8
SYNE1-217ENST00000466159 COPB1P53618 953 aaKnown RBP10.08□□□□□ -0.8
SYNE1-217ENST00000466159 PMS1P54277 932 aaKnown RBP10.08□□□□□ -0.8
SYNE1-217ENST00000466159 RRP36Q96EU6 259 aaKnown RBP10.08□□□□□ -0.8
SYNE1-217ENST00000466159 CARD6Q9BX69 1037 aa10.08□□□□□ -0.8
SYNE1-217ENST00000466159 CCSER1Q9C0I3 900 aa10.08□□□□□ -0.8
SYNE1-217ENST00000466159 OGFRQ9NZT2 677 aa10.08□□□□□ -0.8
SYNE1-217ENST00000466159 DAGLAQ9Y4D2 1042 aa10.08□□□□□ -0.8
SYNE1-217ENST00000466159 AFF2P51816 1311 aa10.08□□□□□ -0.8
SYNE1-217ENST00000466159 ONECUT3O60422 494 aaPredicted RBP10.08□□□□□ -0.8
SYNE1-217ENST00000466159 CCDC175P0C221 793 aa10.08□□□□□ -0.8
SYNE1-217ENST00000466159 HOXA10P31260 410 aaPredicted RBP10.08□□□□□ -0.8
SYNE1-217ENST00000466159 NONOQ15233 471 aaKnown RBP eCLIP10.08□□□□□ -0.8
SYNE1-217ENST00000466159 TXNRD1Q16881 649 aa10.08□□□□□ -0.8
SYNE1-217ENST00000466159 ARHGAP29Q52LW3 1261 aa10.08□□□□□ -0.8
SYNE1-217ENST00000466159 IRF2BP1Q8IU81 584 aa10.08□□□□□ -0.8
SYNE1-217ENST00000466159 SMAP1Q8IYB5 467 aaPredicted RBP10.08□□□□□ -0.8
SYNE1-217ENST00000466159 ADSSL1Q8N142 457 aa10.08□□□□□ -0.8
SYNE1-217ENST00000466159 TBC1D22AQ8WUA7 517 aa10.08□□□□□ -0.8
SYNE1-217ENST00000466159 LZTFL1Q9NQ48 299 aa10.08□□□□□ -0.8
SYNE1-217ENST00000466159 KBTBD4Q9NVX7 518 aa10.08□□□□□ -0.8
SYNE1-217ENST00000466159 BIN2Q9UBW5 565 aaPredicted RBP10.08□□□□□ -0.8
SYNE1-217ENST00000466159 ADGRG1Q9Y653 693 aa10.08□□□□□ -0.8
SYNE1-217ENST00000466159 FRMPD2Q68DX3 1309 aaPredicted RBP10.08□□□□□ -0.8
SYNE1-217ENST00000466159 POLRMTO00411 1230 aaKnown RBP10.07□□□□□ -0.8
SYNE1-217ENST00000466159 LAD1O00515 517 aa10.07□□□□□ -0.8
SYNE1-217ENST00000466159 SOCS7O14512 581 aa10.07□□□□□ -0.8
SYNE1-217ENST00000466159 PRPHP41219 470 aa10.07□□□□□ -0.8
SYNE1-217ENST00000466159 EIF6P56537 245 aaKnown RBP10.07□□□□□ -0.8
SYNE1-217ENST00000466159 JAKMIP3Q5VZ66 844 aa10.07□□□□□ -0.8
SYNE1-217ENST00000466159 KRT25Q7Z3Z0 450 aa10.07□□□□□ -0.8
SYNE1-217ENST00000466159 CLEC10AQ8IUN9 316 aa10.07□□□□□ -0.8
SYNE1-217ENST00000466159 SLF2Q8IX21 1173 aa10.07□□□□□ -0.8
SYNE1-217ENST00000466159 MNS1Q8NEH6 495 aa10.07□□□□□ -0.8
SYNE1-217ENST00000466159 CCDC12Q8WUD4 166 aaPredicted RBP10.07□□□□□ -0.8
SYNE1-217ENST00000466159 KIFC2Q96AC6 838 aa10.07□□□□□ -0.8
SYNE1-217ENST00000466159 C6orf50Q9HD87 102 aa10.07□□□□□ -0.8
SYNE1-217ENST00000466159 SEC63Q9UGP8 760 aaKnown RBP10.07□□□□□ -0.8
SYNE1-217ENST00000466159 ITIH6Q6UXX5 1313 aa10.07□□□□□ -0.8
SYNE1-217ENST00000466159 GOLGB1Q14789 3259 aaKnown RBP10.07□□□□□ -0.8
SYNE1-217ENST00000466159 OR52Z1P0C646 297 aa10.07□□□□□ -0.8
SYNE1-217ENST00000466159 PDHBP11177 359 aa10.07□□□□□ -0.8
SYNE1-217ENST00000466159 H2AFXP16104 143 aaPredicted RBP10.07□□□□□ -0.8
SYNE1-217ENST00000466159 ZSCAN20P17040 1043 aaPredicted RBP10.07□□□□□ -0.8
SYNE1-217ENST00000466159 PLCG1P19174 1290 aa10.07□□□□□ -0.8
SYNE1-217ENST00000466159 GNA11P29992 359 aa10.07□□□□□ -0.8
SYNE1-217ENST00000466159 TECP42680 631 aa10.07□□□□□ -0.8
SYNE1-217ENST00000466159 MAP3K9P80192 1104 aa10.07□□□□□ -0.8
SYNE1-217ENST00000466159 SOGA3Q5TF21 947 aa10.07□□□□□ -0.8
SYNE1-217ENST00000466159 CABP7Q86V35 215 aa10.07□□□□□ -0.8
SYNE1-217ENST00000466159 CNGA4Q8IV77 575 aa10.07□□□□□ -0.8
SYNE1-217ENST00000466159 LRRC47Q8N1G4 583 aaKnown RBP10.07□□□□□ -0.8
SYNE1-217ENST00000466159 TBCKQ8TEA7 893 aa10.07□□□□□ -0.8
SYNE1-217ENST00000466159 UBXN4Q92575 508 aa10.07□□□□□ -0.8
SYNE1-217ENST00000466159 CRAMP1Q96RY5 1269 aa10.07□□□□□ -0.8
SYNE1-217ENST00000466159 NAA15Q9BXJ9 866 aaKnown RBP10.07□□□□□ -0.8
SYNE1-217ENST00000466159 ZNF446Q9NWS9 450 aa10.07□□□□□ -0.8
SYNE1-217ENST00000466159 TMEM260Q9NX78 707 aa10.07□□□□□ -0.8
SYNE1-217ENST00000466159 H7C1D1 291 aa10.06□□□□□ -0.8
SYNE1-217ENST00000466159 TADA3O75528 432 aa10.06□□□□□ -0.8
SYNE1-217ENST00000466159 NOVP48745 357 aa10.06□□□□□ -0.8
SYNE1-217ENST00000466159 UBXN1Q04323 297 aa10.06□□□□□ -0.8
SYNE1-217ENST00000466159 SPAG1Q07617 926 aa10.06□□□□□ -0.8
SYNE1-217ENST00000466159 KCNB1Q14721 858 aa10.06□□□□□ -0.8
SYNE1-217ENST00000466159 NEK8Q86SG6 692 aa10.06□□□□□ -0.8
SYNE1-217ENST00000466159 ANKRD20A12PQ8NF67 263 aa10.06□□□□□ -0.8
SYNE1-217ENST00000466159 EEF2KMTQ96G04 330 aa10.06□□□□□ -0.8
SYNE1-217ENST00000466159 NUP88Q99567 741 aaPredicted RBP10.06□□□□□ -0.8
SYNE1-217ENST00000466159 MXD3Q9BW11 206 aa10.06□□□□□ -0.8
SYNE1-217ENST00000466159 SRRTQ9BXP5 876 aaKnown RBP10.06□□□□□ -0.8
SYNE1-217ENST00000466159 MTMR4Q9NYA4 1195 aa10.06□□□□□ -0.8
SYNE1-217ENST00000466159 PPEF1O14829 653 aaPredicted RBP10.06□□□□□ -0.8
SYNE1-217ENST00000466159 RHOBTB3O94955 611 aa10.06□□□□□ -0.8
SYNE1-217ENST00000466159 AKR1B1P15121 316 aa10.06□□□□□ -0.8
SYNE1-217ENST00000466159 ERVK-24P63145 666 aa10.06□□□□□ -0.8
SYNE1-217ENST00000466159 CERS5Q8N5B7 392 aa10.06□□□□□ -0.8
SYNE1-217ENST00000466159 GIMAP8Q8ND71 665 aaPredicted RBP10.06□□□□□ -0.8
SYNE1-217ENST00000466159 COA7Q96BR5 231 aa10.06□□□□□ -0.8
SYNE1-217ENST00000466159 EPC1Q9H2F5 836 aa10.06□□□□□ -0.8
SYNE1-217ENST00000466159 RIOX1Q9H6W3 641 aa10.06□□□□□ -0.8
SYNE1-217ENST00000466159 DDX4Q9NQI0 724 aaKnown RBP10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms