RNA–Protein interactions for RNA: ENST00000460912.6

SYNE1-215, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 1 (best)

Gene SYNE1, Length 3,664 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-215	ENST00000460912	MFAP3L	O75121	409 aa		9.96	□□□□□ -0.82
SYNE1-215	ENST00000460912	AMPD2	Q01433	879 aa		9.96	□□□□□ -0.82
SYNE1-215	ENST00000460912	SMARCE1	Q969G3	411 aa		9.96	□□□□□ -0.82
SYNE1-215	ENST00000460912	UBAC1	Q9BSL1	405 aa		9.96	□□□□□ -0.82
SYNE1-215	ENST00000460912	SPZ1	Q9BXG8	430 aa		9.96	□□□□□ -0.82
SYNE1-215	ENST00000460912	CCSER1	Q9C0I3	900 aa		9.96	□□□□□ -0.82
SYNE1-215	ENST00000460912	GNL3L	Q9NVN8	582 aa	Known RBP	9.96	□□□□□ -0.82
SYNE1-215	ENST00000460912	ADGRG1	Q9Y653	693 aa		9.96	□□□□□ -0.82
SYNE1-215	ENST00000460912	FZD9	O00144	591 aa		9.95	□□□□□ -0.82
SYNE1-215	ENST00000460912	NPM3	O75607	178 aa	Known RBP	9.95	□□□□□ -0.82
SYNE1-215	ENST00000460912	SMC2	O95347	1197 aa		9.95	□□□□□ -0.82
SYNE1-215	ENST00000460912	USP17L8	P0C7I0	530 aa		9.95	□□□□□ -0.82
SYNE1-215	ENST00000460912	LONP1	P36776	959 aa	Known RBP	9.95	□□□□□ -0.82
SYNE1-215	ENST00000460912	CLK2	P49760	499 aa	Known RBP	9.95	□□□□□ -0.82
SYNE1-215	ENST00000460912	ERVK-24	P63145	666 aa		9.95	□□□□□ -0.82
SYNE1-215	ENST00000460912	CAVIN4	Q5BKX8	364 aa		9.95	□□□□□ -0.82
SYNE1-215	ENST00000460912	WWC2	Q6AWC2	1192 aa		9.95	□□□□□ -0.82
SYNE1-215	ENST00000460912	SYT10	Q6XYQ8	523 aa		9.95	□□□□□ -0.82
SYNE1-215	ENST00000460912	CATIP	Q7Z7H3	387 aa		9.95	□□□□□ -0.82
SYNE1-215	ENST00000460912	TRMT44	Q8IYL2	757 aa	Known RBP	9.95	□□□□□ -0.82
SYNE1-215	ENST00000460912	ADSSL1	Q8N142	457 aa		9.95	□□□□□ -0.82
SYNE1-215	ENST00000460912	SSC5D	A1L4H1	1573 aa		9.95	□□□□□ -0.82
SYNE1-215	ENST00000460912	VIL1	P09327	827 aa	Known RBP	9.95	□□□□□ -0.82
SYNE1-215	ENST00000460912	MTF1	Q14872	753 aa		9.95	□□□□□ -0.82
SYNE1-215	ENST00000460912	MSL3	Q8N5Y2	521 aa	Known RBP	9.95	□□□□□ -0.82
SYNE1-215	ENST00000460912	MTMR8	Q96EF0	704 aa		9.95	□□□□□ -0.82
SYNE1-215	ENST00000460912	TMEM60	Q9H2L4	133 aa		9.95	□□□□□ -0.82
SYNE1-215	ENST00000460912	KCNQ5	Q9NR82	932 aa		9.95	□□□□□ -0.82
SYNE1-215	ENST00000460912	DNAI1	Q9UI46	699 aa		9.95	□□□□□ -0.82
SYNE1-215	ENST00000460912	LRRC37A2	A6NM11	1700 aa		9.95	□□□□□ -0.82
SYNE1-215	ENST00000460912	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	9.95	□□□□□ -0.82
SYNE1-215	ENST00000460912	GTPBP6	O43824	516 aa	Predicted RBP	9.95	□□□□□ -0.82
SYNE1-215	ENST00000460912	FXR1	P51114	621 aa	Known RBP eCLIP	9.95	□□□□□ -0.82
SYNE1-215	ENST00000460912	PMS1	P54277	932 aa	Known RBP	9.95	□□□□□ -0.82
SYNE1-215	ENST00000460912	ELF2	Q15723	593 aa		9.95	□□□□□ -0.82
SYNE1-215	ENST00000460912	ZNF658	Q5TYW1	1059 aa	Predicted RBP	9.95	□□□□□ -0.82
SYNE1-215	ENST00000460912	FOXR2	Q6PJQ5	311 aa		9.95	□□□□□ -0.82
SYNE1-215	ENST00000460912	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	9.95	□□□□□ -0.82
SYNE1-215	ENST00000460912	MTMR9	Q96QG7	549 aa		9.95	□□□□□ -0.82
SYNE1-215	ENST00000460912	LCT	P09848	1927 aa		9.95	□□□□□ -0.82
SYNE1-215	ENST00000460912	SYNRG	Q9UMZ2	1314 aa		9.95	□□□□□ -0.82
SYNE1-215	ENST00000460912	hCG_1642624	A0A1W2PR95	340 aa		9.94	□□□□□ -0.82
SYNE1-215	ENST00000460912	RHOBTB3	O94955	611 aa		9.94	□□□□□ -0.82
SYNE1-215	ENST00000460912	ABL1	P00519	1130 aa		9.94	□□□□□ -0.82
SYNE1-215	ENST00000460912	MEA1	Q16626	185 aa		9.94	□□□□□ -0.82
SYNE1-215	ENST00000460912	TTLL6	Q8N841	843 aa		9.94	□□□□□ -0.82
SYNE1-215	ENST00000460912	DNAJC7	Q99615	494 aa		9.94	□□□□□ -0.82
SYNE1-215	ENST00000460912	DUSP9	Q99956	384 aa	Known RBP	9.94	□□□□□ -0.82
SYNE1-215	ENST00000460912	NAA15	Q9BXJ9	866 aa	Known RBP	9.94	□□□□□ -0.82
SYNE1-215	ENST00000460912	LOXHD1	Q8IVV2	1947 aa		9.94	□□□□□ -0.82
SYNE1-215	ENST00000460912	POLR2A	P24928	1970 aa	Known RBP	9.94	□□□□□ -0.82
SYNE1-215	ENST00000460912	CHAF1A	Q13111	956 aa	Predicted RBP	9.94	□□□□□ -0.82
SYNE1-215	ENST00000460912	FAM47A	Q5JRC9	791 aa		9.94	□□□□□ -0.82
SYNE1-215	ENST00000460912	GALNT17	Q6IS24	598 aa		9.94	□□□□□ -0.82
SYNE1-215	ENST00000460912	TTI2	Q6NXR4	508 aa		9.94	□□□□□ -0.82
SYNE1-215	ENST00000460912	IGSF22	Q8N9C0	903 aa		9.94	□□□□□ -0.82
SYNE1-215	ENST00000460912	GIMAP8	Q8ND71	665 aa	Predicted RBP	9.94	□□□□□ -0.82
SYNE1-215	ENST00000460912	PURB	Q96QR8	312 aa	Known RBP	9.94	□□□□□ -0.82
SYNE1-215	ENST00000460912	BAG1	Q99933	345 aa	Predicted RBP	9.94	□□□□□ -0.82
SYNE1-215	ENST00000460912	RIOX1	Q9H6W3	641 aa		9.94	□□□□□ -0.82
SYNE1-215	ENST00000460912	ESYT2	A0FGR8	921 aa		9.94	□□□□□ -0.82
SYNE1-215	ENST00000460912	MINDY4B	A8MYZ0	360 aa		9.94	□□□□□ -0.82
SYNE1-215	ENST00000460912	MYL1	P05976	194 aa		9.94	□□□□□ -0.82
SYNE1-215	ENST00000460912	PLA2G4A	P47712	749 aa		9.94	□□□□□ -0.82
SYNE1-215	ENST00000460912	RBL2	Q08999	1139 aa		9.94	□□□□□ -0.82
SYNE1-215	ENST00000460912	WDR59	Q6PJI9	974 aa		9.94	□□□□□ -0.82
SYNE1-215	ENST00000460912	FBXW7	Q969H0	707 aa		9.94	□□□□□ -0.82
SYNE1-215	ENST00000460912	CRNKL1	Q9BZJ0	848 aa	Known RBP	9.94	□□□□□ -0.82
SYNE1-215	ENST00000460912	TRPM7	Q96QT4	1865 aa		9.93	□□□□□ -0.82
SYNE1-215	ENST00000460912	ERICH2	A1L162	156 aa		9.93	□□□□□ -0.82
SYNE1-215	ENST00000460912	NKRF	O15226	690 aa	Known RBP eCLIP	9.93	□□□□□ -0.82
SYNE1-215	ENST00000460912	USP5	P45974	858 aa		9.93	□□□□□ -0.82
SYNE1-215	ENST00000460912	HDLBP	Q00341	1268 aa	Known RBP	9.93	□□□□□ -0.82
SYNE1-215	ENST00000460912	KRT31	Q15323	416 aa		9.93	□□□□□ -0.82
SYNE1-215	ENST00000460912	SAFB	Q15424	915 aa	Known RBP eCLIP	9.93	□□□□□ -0.82
SYNE1-215	ENST00000460912	RRP12	Q5JTH9	1297 aa	Known RBP	9.93	□□□□□ -0.82
SYNE1-215	ENST00000460912	RTKN2	Q8IZC4	609 aa		9.93	□□□□□ -0.82
SYNE1-215	ENST00000460912	CRYGN	Q8WXF5	182 aa		9.93	□□□□□ -0.82
SYNE1-215	ENST00000460912	DISC1	Q9NRI5	854 aa		9.93	□□□□□ -0.82
SYNE1-215	ENST00000460912	DACH1	Q9UI36	760 aa		9.93	□□□□□ -0.82
SYNE1-215	ENST00000460912	CNTNAP1	P78357	1384 aa		9.93	□□□□□ -0.82
SYNE1-215	ENST00000460912	EFCAB8	A8MWE9	144 aa		9.93	□□□□□ -0.82
SYNE1-215	ENST00000460912	UFL1	O94874	794 aa		9.93	□□□□□ -0.82
SYNE1-215	ENST00000460912	CLCN6	P51797	869 aa		9.93	□□□□□ -0.82
SYNE1-215	ENST00000460912	MAP3K10	Q02779	954 aa		9.93	□□□□□ -0.82
SYNE1-215	ENST00000460912	ORC2	Q13416	577 aa	Predicted RBP	9.93	□□□□□ -0.82
SYNE1-215	ENST00000460912	TCP11X2	Q5H9J9	407 aa		9.93	□□□□□ -0.82
SYNE1-215	ENST00000460912	MIIP	Q5JXC2	388 aa		9.93	□□□□□ -0.82
SYNE1-215	ENST00000460912	STRIP1	Q5VSL9	837 aa		9.93	□□□□□ -0.82
SYNE1-215	ENST00000460912	BLID	Q8IZY5	108 aa		9.93	□□□□□ -0.82
SYNE1-215	ENST00000460912	GTPBP4	Q9BZE4	634 aa	Known RBP	9.93	□□□□□ -0.82
SYNE1-215	ENST00000460912	RAB21	Q9UL25	225 aa		9.93	□□□□□ -0.82
SYNE1-215	ENST00000460912	WDR81	Q562E7	1941 aa		9.93	□□□□□ -0.82
SYNE1-215	ENST00000460912	LAD1	O00515	517 aa		9.93	□□□□□ -0.82
SYNE1-215	ENST00000460912	CCP110	O43303	1012 aa		9.93	□□□□□ -0.82
SYNE1-215	ENST00000460912	ADK	P55263	362 aa	Known RBP	9.93	□□□□□ -0.82
SYNE1-215	ENST00000460912	ZNF280A	P59817	542 aa	Predicted RBP	9.93	□□□□□ -0.82
SYNE1-215	ENST00000460912	PODN	Q7Z5L7	613 aa		9.93	□□□□□ -0.82
SYNE1-215	ENST00000460912	IQCA1	Q86XH1	822 aa		9.93	□□□□□ -0.82
SYNE1-215	ENST00000460912	SOWAHD	A6NJG2	315 aa		9.92	□□□□□ -0.82

Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms