RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 LRRC47Q8N1G4 583 aaKnown RBP9.69□□□□□ -0.86
USP40-203ENST00000427112 PNMA1Q8ND90 353 aa9.69□□□□□ -0.86
USP40-203ENST00000427112 RRP15Q9Y3B9 282 aaKnown RBP9.69□□□□□ -0.86
USP40-203ENST00000427112 ZNF142P52746 1687 aaPredicted RBP9.69□□□□□ -0.86
USP40-203ENST00000427112 ERLIN1O75477 346 aa9.69□□□□□ -0.86
USP40-203ENST00000427112 PLCG1P19174 1290 aa9.69□□□□□ -0.86
USP40-203ENST00000427112 SLC16A2P36021 539 aa9.69□□□□□ -0.86
USP40-203ENST00000427112 ARHGAP25P42331 645 aa9.69□□□□□ -0.86
USP40-203ENST00000427112 SEC23AQ15436 765 aa9.69□□□□□ -0.86
USP40-203ENST00000427112 RRAGAQ7L523 313 aa9.69□□□□□ -0.86
USP40-203ENST00000427112 CCDC148Q8NFR7 591 aa9.69□□□□□ -0.86
USP40-203ENST00000427112 SMARCC1Q92922 1105 aaPredicted RBP9.69□□□□□ -0.86
USP40-203ENST00000427112 FAM84BQ96KN1 310 aaPredicted RBP9.69□□□□□ -0.86
USP40-203ENST00000427112 PHF20Q9BVI0 1012 aa9.69□□□□□ -0.86
USP40-203ENST00000427112 CARD10Q9BWT7 1032 aa9.69□□□□□ -0.86
USP40-203ENST00000427112 EIF3JO75822 258 aaKnown RBP9.68□□□□□ -0.86
USP40-203ENST00000427112 FTCDO95954 541 aa9.68□□□□□ -0.86
USP40-203ENST00000427112 MAP9Q49MG5 647 aa9.68□□□□□ -0.86
USP40-203ENST00000427112 CYP26C1Q6V0L0 522 aa9.68□□□□□ -0.86
USP40-203ENST00000427112 BCCIPQ9P287 314 aaKnown RBP eCLIP9.68□□□□□ -0.86
USP40-203ENST00000427112 LMO7Q8WWI1 1683 aa9.68□□□□□ -0.86
USP40-203ENST00000427112 MYH10P35580 1976 aa9.68□□□□□ -0.86
USP40-203ENST00000427112 RFX7Q2KHR2 1363 aa9.68□□□□□ -0.86
USP40-203ENST00000427112 RIMBP2O15034 1052 aa9.68□□□□□ -0.86
USP40-203ENST00000427112 FGFR2P21802 821 aa9.68□□□□□ -0.86
USP40-203ENST00000427112 CCT5P48643 541 aa9.68□□□□□ -0.86
USP40-203ENST00000427112 TXNRD1Q16881 649 aa9.68□□□□□ -0.86
USP40-203ENST00000427112 TMTC3Q6ZXV5 915 aa9.68□□□□□ -0.86
USP40-203ENST00000427112 TXLNBQ8N3L3 684 aa9.68□□□□□ -0.86
USP40-203ENST00000427112 CERKQ8TCT0 537 aa9.68□□□□□ -0.86
USP40-203ENST00000427112 SH3RF3Q8TEJ3 882 aaPredicted RBP9.68□□□□□ -0.86
USP40-203ENST00000427112 TUBGCP2Q9BSJ2 902 aa9.68□□□□□ -0.86
USP40-203ENST00000427112 DMGDHQ9UI17 866 aaKnown RBP9.68□□□□□ -0.86
USP40-203ENST00000427112 HYOU1Q9Y4L1 999 aa9.68□□□□□ -0.86
USP40-203ENST00000427112 CAMTA1Q9Y6Y1 1673 aa9.68□□□□□ -0.86
USP40-203ENST00000427112 LTBP4Q8N2S1 1624 aa9.68□□□□□ -0.86
USP40-203ENST00000427112 MROH5Q6ZUA9 1318 aa9.68□□□□□ -0.86
USP40-203ENST00000427112 TNNI2P48788 182 aa9.68□□□□□ -0.86
USP40-203ENST00000427112 HERVK_113P62684 666 aa9.68□□□□□ -0.86
USP40-203ENST00000427112 RASSF7Q02833 373 aa9.68□□□□□ -0.86
USP40-203ENST00000427112 CCDC181Q5TID7 509 aa9.68□□□□□ -0.86
USP40-203ENST00000427112 ANKRD40Q6AI12 368 aa9.68□□□□□ -0.86
USP40-203ENST00000427112 BLIDQ8IZY5 108 aa9.68□□□□□ -0.86
USP40-203ENST00000427112 MICALL1Q8N3F8 863 aa9.68□□□□□ -0.86
USP40-203ENST00000427112 CEP112Q8N8E3 955 aa9.68□□□□□ -0.86
USP40-203ENST00000427112 ABCC12Q96J65 1359 aa9.67□□□□□ -0.86
USP40-203ENST00000427112 LOC102724428A0A0B4J2F2 783 aa9.67□□□□□ -0.86
USP40-203ENST00000427112 NPHP3-ACAD11A0A0J9YXS1 232 aa9.67□□□□□ -0.86
USP40-203ENST00000427112 SIK1P57059 783 aa9.67□□□□□ -0.86
USP40-203ENST00000427112 UBE2SQ16763 222 aa9.67□□□□□ -0.86
USP40-203ENST00000427112 KANK3Q6NY19 840 aa9.67□□□□□ -0.86
USP40-203ENST00000427112 IRF2BP1Q8IU81 584 aa9.67□□□□□ -0.86
USP40-203ENST00000427112 KLHL7Q8IXQ5 586 aa9.67□□□□□ -0.86
USP40-203ENST00000427112 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.67□□□□□ -0.86
USP40-203ENST00000427112 CNOT6LQ96LI5 555 aaKnown RBP9.67□□□□□ -0.86
USP40-203ENST00000427112 CCDC42Q96M95 316 aa9.67□□□□□ -0.86
USP40-203ENST00000427112 DCP1AQ9NPI6 582 aaPredicted RBP9.67□□□□□ -0.86
USP40-203ENST00000427112 CCDC87Q9NVE4 849 aa9.67□□□□□ -0.86
USP40-203ENST00000427112 SAR1BQ9Y6B6 198 aa9.67□□□□□ -0.86
USP40-203ENST00000427112 CAPN6Q9Y6Q1 641 aa9.67□□□□□ -0.86
USP40-203ENST00000427112 ARFGEF2Q9Y6D5 1785 aa9.67□□□□□ -0.86
USP40-203ENST00000427112 TAF1P21675 1872 aa9.67□□□□□ -0.86
USP40-203ENST00000427112 HGSO14964 777 aaPredicted RBP9.67□□□□□ -0.86
USP40-203ENST00000427112 HPDP32754 393 aaPredicted RBP9.67□□□□□ -0.86
USP40-203ENST00000427112 GFPT1Q06210 699 aaPredicted RBP9.67□□□□□ -0.86
USP40-203ENST00000427112 NPY5RQ15761 445 aa9.67□□□□□ -0.86
USP40-203ENST00000427112 ZNF444Q8N0Y2 327 aaPredicted RBP9.67□□□□□ -0.86
USP40-203ENST00000427112 OR8K1Q8NGG5 319 aa9.67□□□□□ -0.86
USP40-203ENST00000427112 SECISBP2LQ93073 1101 aaKnown RBP9.67□□□□□ -0.86
USP40-203ENST00000427112 LRRC1Q9BTT6 524 aa9.67□□□□□ -0.86
USP40-203ENST00000427112 RNF26Q9BY78 433 aaPredicted RBP9.67□□□□□ -0.86
USP40-203ENST00000427112 TRIM31Q9BZY9 425 aa9.67□□□□□ -0.86
USP40-203ENST00000427112 NHEJ1Q9H9Q4 299 aaPredicted RBP9.67□□□□□ -0.86
USP40-203ENST00000427112 ZNHIT6Q9NWK9 470 aaKnown RBP9.67□□□□□ -0.86
USP40-203ENST00000427112 MINPP1Q9UNW1 487 aa9.67□□□□□ -0.86
USP40-203ENST00000427112 BAZ2AQ9UIF9 1905 aaKnown RBP9.67□□□□□ -0.86
USP40-203ENST00000427112 CCDC151A5D8V7 595 aa9.67□□□□□ -0.86
USP40-203ENST00000427112 TMCO5BA8MYB1 307 aa9.67□□□□□ -0.86
USP40-203ENST00000427112 MPHOSPH10O00566 681 aaKnown RBP9.67□□□□□ -0.86
USP40-203ENST00000427112 NBPF5PQ86XG9 351 aaPredicted RBP9.67□□□□□ -0.86
USP40-203ENST00000427112 MXD3Q9BW11 206 aa9.67□□□□□ -0.86
USP40-203ENST00000427112 BCAS3Q9H6U6 928 aa9.67□□□□□ -0.86
USP40-203ENST00000427112 EXOC1Q9NV70 894 aa9.67□□□□□ -0.86
USP40-203ENST00000427112 GOLGA6L9A6NEM1 432 aa9.66□□□□□ -0.86
USP40-203ENST00000427112 SMIM23A6NLE4 172 aa9.66□□□□□ -0.86
USP40-203ENST00000427112 ERCC5P28715 1186 aaPredicted RBP9.66□□□□□ -0.86
USP40-203ENST00000427112 NAA35Q5VZE5 725 aa9.66□□□□□ -0.86
USP40-203ENST00000427112 TMTC1Q8IUR5 882 aa9.66□□□□□ -0.86
USP40-203ENST00000427112 MB21D1Q8N884 522 aa9.66□□□□□ -0.86
USP40-203ENST00000427112 CDK5RAP3Q96JB5 506 aa9.66□□□□□ -0.86
USP40-203ENST00000427112 PANX2Q96RD6 677 aa9.66□□□□□ -0.86
USP40-203ENST00000427112 NUDT12Q9BQG2 462 aa9.66□□□□□ -0.86
USP40-203ENST00000427112 RIOK1Q9BRS2 568 aaKnown RBP9.66□□□□□ -0.86
USP40-203ENST00000427112 MYH13Q9UKX3 1938 aa9.66□□□□□ -0.86
USP40-203ENST00000427112 ABCC6O95255 1503 aa9.66□□□□□ -0.86
USP40-203ENST00000427112 CNTNAP5Q8WYK1 1306 aa9.66□□□□□ -0.86
USP40-203ENST00000427112 DDB1Q16531 1140 aa9.66□□□□□ -0.86
USP40-203ENST00000427112 FAM98CQ17RN3 349 aaKnown RBP9.66□□□□□ -0.86
USP40-203ENST00000427112 TBC1D9BQ66K14 1250 aa9.66□□□□□ -0.86
USP40-203ENST00000427112 WDR59Q6PJI9 974 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms