RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 NUP88Q99567 741 aaPredicted RBP16.39■□□□□ 0.21
SKA1-202ENST00000398452 RIOX1Q9H6W3 641 aa16.39■□□□□ 0.21
SKA1-202ENST00000398452 AFG3L2Q9Y4W6 797 aa16.39■□□□□ 0.21
SKA1-202ENST00000398452 CCDC85CA6NKD9 419 aa16.38■□□□□ 0.21
SKA1-202ENST00000398452 DTNBO60941 627 aa16.38■□□□□ 0.21
SKA1-202ENST00000398452 FDPSP14324 419 aaKnown RBP16.38■□□□□ 0.21
SKA1-202ENST00000398452 SLC16A2P36021 539 aa16.38■□□□□ 0.21
SKA1-202ENST00000398452 PABPC4Q13310 644 aaKnown RBP eCLIP16.38■□□□□ 0.21
SKA1-202ENST00000398452 PFKFB3Q16875 520 aaPredicted RBP16.38■□□□□ 0.21
SKA1-202ENST00000398452 TTBK2Q6IQ55 1244 aa16.38■□□□□ 0.21
SKA1-202ENST00000398452 GADL1Q6ZQY3 521 aa16.38■□□□□ 0.21
SKA1-202ENST00000398452 FASTKD5Q7L8L6 764 aaKnown RBP16.38■□□□□ 0.21
SKA1-202ENST00000398452 RASGRP2Q7LDG7 609 aa16.38■□□□□ 0.21
SKA1-202ENST00000398452 HEATR3Q7Z4Q2 680 aa16.38■□□□□ 0.21
SKA1-202ENST00000398452 ADGRF4Q8IZF3 695 aa16.38■□□□□ 0.21
SKA1-202ENST00000398452 RGS22Q8NE09 1264 aa16.38■□□□□ 0.21
SKA1-202ENST00000398452 KIFC2Q96AC6 838 aa16.38■□□□□ 0.21
SKA1-202ENST00000398452 C12orf42Q96LP6 360 aa16.38■□□□□ 0.21
SKA1-202ENST00000398452 PIGSQ96S52 555 aa16.38■□□□□ 0.21
SKA1-202ENST00000398452 PNMA6FA0A0J9YX94 578 aa16.37■□□□□ 0.21
SKA1-202ENST00000398452 PLA2G6O60733 806 aa16.37■□□□□ 0.21
SKA1-202ENST00000398452 FLOT1O75955 427 aa16.37■□□□□ 0.21
SKA1-202ENST00000398452 ZSCAN22P10073 491 aaPredicted RBP16.37■□□□□ 0.21
SKA1-202ENST00000398452 VCAM1P19320 739 aa16.37■□□□□ 0.21
SKA1-202ENST00000398452 NLRP5P59047 1200 aa16.37■□□□□ 0.21
SKA1-202ENST00000398452 FUT2Q10981 343 aa16.37■□□□□ 0.21
SKA1-202ENST00000398452 SNAPC2Q13487 334 aa16.37■□□□□ 0.21
SKA1-202ENST00000398452 BTNL9Q6UXG8 535 aa16.37■□□□□ 0.21
SKA1-202ENST00000398452 FAM177A1Q8N128 213 aaPredicted RBP16.37■□□□□ 0.21
SKA1-202ENST00000398452 SLF1Q9BQI6 1058 aa16.37■□□□□ 0.21
SKA1-202ENST00000398452 RPAP3Q9H6T3 665 aaPredicted RBP16.37■□□□□ 0.21
SKA1-202ENST00000398452 BMP2KQ9NSY1 1161 aaPredicted RBP16.37■□□□□ 0.21
SKA1-202ENST00000398452 EMILIN3Q9NT22 766 aa16.37■□□□□ 0.21
SKA1-202ENST00000398452 PNMA2Q9UL42 364 aa16.37■□□□□ 0.21
SKA1-202ENST00000398452 hCG_1642624A0A1W2PR95 340 aa16.36■□□□□ 0.21
SKA1-202ENST00000398452 USP17L15C9J2P7 530 aa16.36■□□□□ 0.21
SKA1-202ENST00000398452 USP17L13C9JLJ4 530 aa16.36■□□□□ 0.21
SKA1-202ENST00000398452 USP17L11C9JVI0 530 aa16.36■□□□□ 0.21
SKA1-202ENST00000398452 USP17L18D6R9N7 530 aa16.36■□□□□ 0.21
SKA1-202ENST00000398452 USP17L22D6RA61 530 aa16.36■□□□□ 0.21
SKA1-202ENST00000398452 USP17L17D6RBQ6 530 aa16.36■□□□□ 0.21
SKA1-202ENST00000398452 USP17L19D6RCP7 530 aa16.36■□□□□ 0.21
SKA1-202ENST00000398452 USP17L20D6RJB6 530 aa16.36■□□□□ 0.21
SKA1-202ENST00000398452 IRF6O14896 467 aa16.36■□□□□ 0.21
SKA1-202ENST00000398452 ZBTB5O15062 677 aa16.36■□□□□ 0.21
SKA1-202ENST00000398452 CA12O43570 354 aa16.36■□□□□ 0.21
SKA1-202ENST00000398452 TRPA1O75762 1119 aa16.36■□□□□ 0.21
SKA1-202ENST00000398452 FDX1P10109 184 aa16.36■□□□□ 0.21
SKA1-202ENST00000398452 CALML3P27482 149 aa16.36■□□□□ 0.21
SKA1-202ENST00000398452 DDIT3P35638 169 aa16.36■□□□□ 0.21
SKA1-202ENST00000398452 NAPAP54920 295 aa16.36■□□□□ 0.21
SKA1-202ENST00000398452 GUCY1B3Q02153 619 aa16.36■□□□□ 0.21
SKA1-202ENST00000398452 USP17L24Q0WX57 530 aa16.36■□□□□ 0.21
SKA1-202ENST00000398452 MKRN3Q13064 507 aaKnown RBP16.36■□□□□ 0.21
SKA1-202ENST00000398452 SH3D19Q5HYK7 790 aa16.36■□□□□ 0.21
SKA1-202ENST00000398452 FOXD4L5Q5VV16 416 aaPredicted RBP16.36■□□□□ 0.21
SKA1-202ENST00000398452 PRPF38AQ8NAV1 312 aaKnown RBP16.36■□□□□ 0.21
SKA1-202ENST00000398452 FBXO18Q8NFZ0 1043 aa16.36■□□□□ 0.21
SKA1-202ENST00000398452 FOXD4L4Q8WXT5 416 aaPredicted RBP16.36■□□□□ 0.21
SKA1-202ENST00000398452 CPVLQ9H3G5 476 aa16.36■□□□□ 0.21
SKA1-202ENST00000398452 ZSCAN16Q9H4T2 348 aaPredicted RBP16.36■□□□□ 0.21
SKA1-202ENST00000398452 JMJD4Q9H9V9 463 aa16.36■□□□□ 0.21
SKA1-202ENST00000398452 SH3GLB2Q9NR46 395 aa16.36■□□□□ 0.21
SKA1-202ENST00000398452 CYTH3O43739 400 aa16.35■□□□□ 0.21
SKA1-202ENST00000398452 ZBED4O75132 1171 aa16.35■□□□□ 0.21
SKA1-202ENST00000398452 BRD1O95696 1058 aa16.35■□□□□ 0.21
SKA1-202ENST00000398452 SLC10A3P09131 477 aa16.35■□□□□ 0.21
SKA1-202ENST00000398452 GTF2A2P52657 109 aa16.35■□□□□ 0.21
SKA1-202ENST00000398452 CDC37Q16543 378 aaPredicted RBP16.35■□□□□ 0.21
SKA1-202ENST00000398452 KRT40Q6A162 431 aa16.35■□□□□ 0.21
SKA1-202ENST00000398452 RASAL3Q86YV0 1011 aa16.35■□□□□ 0.21
SKA1-202ENST00000398452 PROCA1Q8NCQ7 364 aaPredicted RBP16.35■□□□□ 0.21
SKA1-202ENST00000398452 FAM212AQ96EL1 285 aa16.35■□□□□ 0.21
SKA1-202ENST00000398452 AMNQ9BXJ7 453 aa16.35■□□□□ 0.21
SKA1-202ENST00000398452 C6orf50Q9HD87 102 aa16.35■□□□□ 0.21
SKA1-202ENST00000398452 VPS54Q9P1Q0 977 aa16.35■□□□□ 0.21
SKA1-202ENST00000398452 PRR12Q9ULL5 1215 aa16.35■□□□□ 0.21
SKA1-202ENST00000398452 MTMR6Q9Y217 621 aa16.35■□□□□ 0.21
SKA1-202ENST00000398452 A0A0G2JLL6 359 aaPredicted RBP16.34■□□□□ 0.21
SKA1-202ENST00000398452 F13A1P00488 732 aa16.34■□□□□ 0.21
SKA1-202ENST00000398452 CETPP11597 493 aa16.34■□□□□ 0.21
SKA1-202ENST00000398452 OSBPP22059 807 aa16.34■□□□□ 0.21
SKA1-202ENST00000398452 GNA11P29992 359 aa16.34■□□□□ 0.21
SKA1-202ENST00000398452 IRX3P78415 501 aaPredicted RBP16.34■□□□□ 0.21
SKA1-202ENST00000398452 DGKZQ13574 1117 aa16.34■□□□□ 0.21
SKA1-202ENST00000398452 GALNT17Q6IS24 598 aa16.34■□□□□ 0.21
SKA1-202ENST00000398452 PRRT2Q7Z6L0 340 aaPredicted RBP16.34■□□□□ 0.21
SKA1-202ENST00000398452 FBXO11Q86XK2 927 aa16.34■□□□□ 0.21
SKA1-202ENST00000398452 WNK4Q96J92 1243 aa16.34■□□□□ 0.21
SKA1-202ENST00000398452 AIFM3Q96NN9 605 aa16.34■□□□□ 0.21
SKA1-202ENST00000398452 GBP4Q96PP9 640 aa16.34■□□□□ 0.21
SKA1-202ENST00000398452 GLT8D2Q9H1C3 349 aa16.34■□□□□ 0.21
SKA1-202ENST00000398452 RNF186Q9NXI6 227 aa16.34■□□□□ 0.21
SKA1-202ENST00000398452 HOXC10Q9NYD6 342 aa16.34■□□□□ 0.21
SKA1-202ENST00000398452 KCNH4Q9UQ05 1017 aa16.34■□□□□ 0.21
SKA1-202ENST00000398452 TRPC6Q9Y210 931 aa16.34■□□□□ 0.21
SKA1-202ENST00000398452 ZBTB48P10074 688 aaPredicted RBP16.33■□□□□ 0.2
SKA1-202ENST00000398452 KRT2P35908 639 aa16.33■□□□□ 0.2
SKA1-202ENST00000398452 COG2Q14746 738 aa16.33■□□□□ 0.2
SKA1-202ENST00000398452 PKN1Q16512 942 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms