RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 GYPCP04921 128 aa24.56■■□□□ 1.52
SHMT1-202ENST00000352886 CCDC175P0C221 793 aa24.56■■□□□ 1.52
SHMT1-202ENST00000352886 CASQ1P31415 396 aa24.56■■□□□ 1.52
SHMT1-202ENST00000352886 SPAG1Q07617 926 aa24.56■■□□□ 1.52
SHMT1-202ENST00000352886 TCP11X2Q5H9J9 407 aa24.56■■□□□ 1.52
SHMT1-202ENST00000352886 TBC1D22AQ8WUA7 517 aa24.56■■□□□ 1.52
SHMT1-202ENST00000352886 SMCO2A6NFE2 343 aa24.56■■□□□ 1.52
SHMT1-202ENST00000352886 PRPHP41219 470 aa24.56■■□□□ 1.52
SHMT1-202ENST00000352886 RAD9BQ6WBX8 426 aa24.56■■□□□ 1.52
SHMT1-202ENST00000352886 RRP36Q96EU6 259 aaKnown RBP24.56■■□□□ 1.52
SHMT1-202ENST00000352886 SRRTQ9BXP5 876 aaKnown RBP24.56■■□□□ 1.52
SHMT1-202ENST00000352886 MRPL44Q9H9J2 332 aaKnown RBP24.56■■□□□ 1.52
SHMT1-202ENST00000352886 VAT1LQ9HCJ6 419 aa24.56■■□□□ 1.52
SHMT1-202ENST00000352886 KCNJ18B7U540 433 aa24.55■■□□□ 1.52
SHMT1-202ENST00000352886 FXR1P51114 621 aaKnown RBP eCLIP24.55■■□□□ 1.52
SHMT1-202ENST00000352886 COPB1P53618 953 aaKnown RBP24.55■■□□□ 1.52
SHMT1-202ENST00000352886 KCNJ12Q14500 433 aa24.55■■□□□ 1.52
SHMT1-202ENST00000352886 LETM2Q2VYF4 491 aa24.55■■□□□ 1.52
SHMT1-202ENST00000352886 KRT25Q7Z3Z0 450 aa24.55■■□□□ 1.52
SHMT1-202ENST00000352886 CNGA4Q8IV77 575 aa24.55■■□□□ 1.52
SHMT1-202ENST00000352886 MNS1Q8NEH6 495 aa24.55■■□□□ 1.52
SHMT1-202ENST00000352886 ANKRD20A12PQ8NF67 263 aa24.55■■□□□ 1.52
SHMT1-202ENST00000352886 TAB2Q9NYJ8 693 aa24.55■■□□□ 1.52
SHMT1-202ENST00000352886 SEC63Q9UGP8 760 aaKnown RBP24.55■■□□□ 1.52
SHMT1-202ENST00000352886 NONOQ15233 471 aaKnown RBP eCLIP24.55■■□□□ 1.52
SHMT1-202ENST00000352886 C6orf50Q9HD87 102 aa24.55■■□□□ 1.52
SHMT1-202ENST00000352886 CCNT1O60563 726 aaKnown RBP24.54■■□□□ 1.52
SHMT1-202ENST00000352886 HOXA10P31260 410 aaPredicted RBP24.54■■□□□ 1.52
SHMT1-202ENST00000352886 TPM1P09493 284 aa24.54■■□□□ 1.52
SHMT1-202ENST00000352886 GNA11P29992 359 aa24.54■■□□□ 1.52
SHMT1-202ENST00000352886 DDR1Q08345 913 aa24.54■■□□□ 1.52
SHMT1-202ENST00000352886 ADSSL1Q8N142 457 aa24.54■■□□□ 1.52
SHMT1-202ENST00000352886 PIGSQ96S52 555 aa24.54■■□□□ 1.52
SHMT1-202ENST00000352886 CARD6Q9BX69 1037 aa24.54■■□□□ 1.52
SHMT1-202ENST00000352886 KBTBD4Q9NVX7 518 aa24.54■■□□□ 1.52
SHMT1-202ENST00000352886 TRIM49BA6NDI0 452 aa24.53■■□□□ 1.52
SHMT1-202ENST00000352886 OR52Z1P0C646 297 aa24.53■■□□□ 1.52
SHMT1-202ENST00000352886 GTF2IP78347 998 aa24.53■■□□□ 1.52
SHMT1-202ENST00000352886 ARHGAP29Q52LW3 1261 aa24.53■■□□□ 1.52
SHMT1-202ENST00000352886 LRRC15Q8TF66 581 aa24.53■■□□□ 1.52
SHMT1-202ENST00000352886 DAGLAQ9Y4D2 1042 aa24.53■■□□□ 1.52
SHMT1-202ENST00000352886 ADGRG1Q9Y653 693 aa24.53■■□□□ 1.52
SHMT1-202ENST00000352886 AFF2P51816 1311 aa24.53■■□□□ 1.52
SHMT1-202ENST00000352886 KLRC4O43908 158 aa24.53■■□□□ 1.52
SHMT1-202ENST00000352886 ONECUT3O60422 494 aaPredicted RBP24.53■■□□□ 1.52
SHMT1-202ENST00000352886 KCNB1Q14721 858 aa24.53■■□□□ 1.52
SHMT1-202ENST00000352886 SOGA3Q5TF21 947 aa24.53■■□□□ 1.52
SHMT1-202ENST00000352886 UBXN4Q92575 508 aa24.53■■□□□ 1.52
SHMT1-202ENST00000352886 KIFC2Q96AC6 838 aa24.53■■□□□ 1.52
SHMT1-202ENST00000352886 UBA5Q9GZZ9 404 aa24.53■■□□□ 1.52
SHMT1-202ENST00000352886 USP17L5A8MUK1 530 aa24.52■■□□□ 1.52
SHMT1-202ENST00000352886 MYL1P05976 194 aa24.52■■□□□ 1.52
SHMT1-202ENST00000352886 CCDC51Q96ER9 411 aa24.52■■□□□ 1.52
SHMT1-202ENST00000352886 CRAMP1Q96RY5 1269 aa24.52■■□□□ 1.52
SHMT1-202ENST00000352886 LZTFL1Q9NQ48 299 aa24.52■■□□□ 1.52
SHMT1-202ENST00000352886 LTBP1Q14766 1721 aa24.52■■□□□ 1.52
SHMT1-202ENST00000352886 H7C1D1 291 aa24.52■■□□□ 1.52
SHMT1-202ENST00000352886 H2AFXP16104 143 aaPredicted RBP24.52■■□□□ 1.52
SHMT1-202ENST00000352886 SMARCA1P28370 1054 aa24.52■■□□□ 1.52
SHMT1-202ENST00000352886 NOVP48745 357 aa24.52■■□□□ 1.52
SHMT1-202ENST00000352886 PICALMQ13492 652 aa24.52■■□□□ 1.52
SHMT1-202ENST00000352886 TXNRD1Q16881 649 aa24.52■■□□□ 1.52
SHMT1-202ENST00000352886 NEK8Q86SG6 692 aa24.52■■□□□ 1.52
SHMT1-202ENST00000352886 CABP7Q86V35 215 aa24.52■■□□□ 1.52
SHMT1-202ENST00000352886 PLCG1P19174 1290 aa24.51■■□□□ 1.51
SHMT1-202ENST00000352886 PMS1P54277 932 aaKnown RBP24.51■■□□□ 1.51
SHMT1-202ENST00000352886 AK8Q96MA6 479 aa24.51■■□□□ 1.51
SHMT1-202ENST00000352886 IRX2Q9BZI1 471 aaPredicted RBP24.51■■□□□ 1.51
SHMT1-202ENST00000352886 LRRC37AA6NMS7 1700 aa24.51■■□□□ 1.51
SHMT1-202ENST00000352886 POLRMTO00411 1230 aaKnown RBP24.51■■□□□ 1.51
SHMT1-202ENST00000352886 RIMBP2O15034 1052 aa24.51■■□□□ 1.51
SHMT1-202ENST00000352886 TADA3O75528 432 aa24.51■■□□□ 1.51
SHMT1-202ENST00000352886 MAP3K9P80192 1104 aa24.51■■□□□ 1.51
SHMT1-202ENST00000352886 FRMPD2Q68DX3 1309 aaPredicted RBP24.5■■□□□ 1.51
SHMT1-202ENST00000352886 RHOBTB3O94955 611 aa24.5■■□□□ 1.51
SHMT1-202ENST00000352886 PDHBP11177 359 aa24.5■■□□□ 1.51
SHMT1-202ENST00000352886 IRF2BP1Q8IU81 584 aa24.5■■□□□ 1.51
SHMT1-202ENST00000352886 TBCKQ8TEA7 893 aa24.5■■□□□ 1.51
SHMT1-202ENST00000352886 NUP88Q99567 741 aaPredicted RBP24.5■■□□□ 1.51
SHMT1-202ENST00000352886 ABHD10Q9NUJ1 306 aa24.5■■□□□ 1.51
SHMT1-202ENST00000352886 A0A0U1RQJ8 604 aa24.5■■□□□ 1.51
SHMT1-202ENST00000352886 ATRIPQ8WXE1 791 aa24.5■■□□□ 1.51
SHMT1-202ENST00000352886 BIN2Q9UBW5 565 aaPredicted RBP24.5■■□□□ 1.51
SHMT1-202ENST00000352886 MRFAP1Q9Y605 127 aa24.5■■□□□ 1.51
SHMT1-202ENST00000352886 EFCAB8A8MWE9 144 aa24.49■■□□□ 1.51
SHMT1-202ENST00000352886 F8W031 263 aaPredicted RBP24.49■■□□□ 1.51
SHMT1-202ENST00000352886 FECHP22830 423 aa24.49■■□□□ 1.51
SHMT1-202ENST00000352886 UBXN1Q04323 297 aa24.49■■□□□ 1.51
SHMT1-202ENST00000352886 STIM1Q13586 685 aa24.49■■□□□ 1.51
SHMT1-202ENST00000352886 JAKMIP3Q5VZ66 844 aa24.49■■□□□ 1.51
SHMT1-202ENST00000352886 REXO1Q8N1G1 1221 aaKnown RBP24.49■■□□□ 1.51
SHMT1-202ENST00000352886 GIMAP8Q8ND71 665 aaPredicted RBP24.49■■□□□ 1.51
SHMT1-202ENST00000352886 CUEDC2Q9H467 287 aa24.49■■□□□ 1.51
SHMT1-202ENST00000352886 RNF225M0QZC1 329 aaPredicted RBP24.49■■□□□ 1.51
SHMT1-202ENST00000352886 PPEF1O14829 653 aaPredicted RBP24.49■■□□□ 1.51
SHMT1-202ENST00000352886 ZSCAN20P17040 1043 aaPredicted RBP24.49■■□□□ 1.51
SHMT1-202ENST00000352886 TECP42680 631 aa24.49■■□□□ 1.51
SHMT1-202ENST00000352886 RIOX1Q9H6W3 641 aa24.49■■□□□ 1.51
SHMT1-202ENST00000352886 ZNF446Q9NWS9 450 aa24.49■■□□□ 1.51
SHMT1-202ENST00000352886 MTMR4Q9NYA4 1195 aa24.49■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms