RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.68■□□□□ 0.42
LIMS1-202ENST00000338045 ZNF112Q9UJU3 913 aa17.68■□□□□ 0.42
LIMS1-202ENST00000338045 ATAD5Q96QE3 1844 aa17.68■□□□□ 0.42
LIMS1-202ENST00000338045 CTAGE5O15320 804 aa17.67■□□□□ 0.42
LIMS1-202ENST00000338045 XRCC6P12956 609 aaKnown RBP eCLIP17.67■□□□□ 0.42
LIMS1-202ENST00000338045 PFKFB1P16118 471 aa17.67■□□□□ 0.42
LIMS1-202ENST00000338045 ATP2C1P98194 919 aaPredicted RBP17.67■□□□□ 0.42
LIMS1-202ENST00000338045 CAMK4Q16566 473 aa17.67■□□□□ 0.42
LIMS1-202ENST00000338045 QRICH1Q2TAL8 776 aa17.67■□□□□ 0.42
LIMS1-202ENST00000338045 SYDE2Q5VT97 1194 aa17.67■□□□□ 0.42
LIMS1-202ENST00000338045 DCAF15Q66K64 600 aa17.67■□□□□ 0.42
LIMS1-202ENST00000338045 KRT25Q7Z3Z0 450 aa17.67■□□□□ 0.42
LIMS1-202ENST00000338045 CLIC6Q96NY7 704 aa17.67■□□□□ 0.42
LIMS1-202ENST00000338045 ADARB2Q9NS39 739 aaKnown RBP17.67■□□□□ 0.42
LIMS1-202ENST00000338045 TMEM232C9JQI7 657 aa17.67■□□□□ 0.42
LIMS1-202ENST00000338045 KINO60870 393 aaKnown RBP17.67■□□□□ 0.42
LIMS1-202ENST00000338045 ZNF174Q15697 407 aa17.67■□□□□ 0.42
LIMS1-202ENST00000338045 CDC37Q16543 378 aaPredicted RBP17.67■□□□□ 0.42
LIMS1-202ENST00000338045 RBSNQ9H1K0 784 aa17.67■□□□□ 0.42
LIMS1-202ENST00000338045 PLA2G6O60733 806 aa17.66■□□□□ 0.42
LIMS1-202ENST00000338045 ADCY7P51828 1080 aa17.66■□□□□ 0.42
LIMS1-202ENST00000338045 SPICE1Q8N0Z3 855 aa17.66■□□□□ 0.42
LIMS1-202ENST00000338045 REXO1Q8N1G1 1221 aaKnown RBP17.66■□□□□ 0.42
LIMS1-202ENST00000338045 FERMT2Q96AC1 680 aa17.66■□□□□ 0.42
LIMS1-202ENST00000338045 ZNF341Q9BYN7 854 aa17.66■□□□□ 0.42
LIMS1-202ENST00000338045 GLIS2Q9BZE0 524 aaPredicted RBP17.66■□□□□ 0.42
LIMS1-202ENST00000338045 RIC8AQ9NPQ8 531 aa17.66■□□□□ 0.42
LIMS1-202ENST00000338045 LMOD1P29536 600 aaPredicted RBP17.65■□□□□ 0.42
LIMS1-202ENST00000338045 GRIN1Q05586 938 aa17.65■□□□□ 0.42
LIMS1-202ENST00000338045 GLIPR1L2Q4G1C9 344 aa17.65■□□□□ 0.42
LIMS1-202ENST00000338045 MRVI1Q9Y6F6 885 aa17.65■□□□□ 0.42
LIMS1-202ENST00000338045 ZNF202O95125 648 aa17.65■□□□□ 0.42
LIMS1-202ENST00000338045 CLK2P49760 499 aaKnown RBP17.65■□□□□ 0.42
LIMS1-202ENST00000338045 STAT2P52630 851 aa17.65■□□□□ 0.42
LIMS1-202ENST00000338045 PTGDRQ13258 359 aa17.65■□□□□ 0.42
LIMS1-202ENST00000338045 NONOQ15233 471 aaKnown RBP eCLIP17.65■□□□□ 0.42
LIMS1-202ENST00000338045 INF2Q27J81 1249 aa17.65■□□□□ 0.42
LIMS1-202ENST00000338045 C4orf32Q8N8J7 132 aa17.65■□□□□ 0.42
LIMS1-202ENST00000338045 TIGD1Q96MW7 591 aa17.65■□□□□ 0.42
LIMS1-202ENST00000338045 PRR12Q9ULL5 1215 aa17.65■□□□□ 0.42
LIMS1-202ENST00000338045 INPP5BP32019 993 aa17.64■□□□□ 0.41
LIMS1-202ENST00000338045 SYKP43405 635 aa17.64■□□□□ 0.41
LIMS1-202ENST00000338045 FAM83BQ5T0W9 1011 aa17.64■□□□□ 0.41
LIMS1-202ENST00000338045 CCDC84Q86UT8 332 aaPredicted RBP17.64■□□□□ 0.41
LIMS1-202ENST00000338045 L3MBTL3Q96JM7 780 aaPredicted RBP17.64■□□□□ 0.41
LIMS1-202ENST00000338045 KIAA1683Q9H0B3 1180 aa17.64■□□□□ 0.41
LIMS1-202ENST00000338045 GLT8D2Q9H1C3 349 aa17.64■□□□□ 0.41
LIMS1-202ENST00000338045 CCDC192P0DO97 292 aa17.63■□□□□ 0.41
LIMS1-202ENST00000338045 MCM7P33993 719 aa17.63■□□□□ 0.41
LIMS1-202ENST00000338045 ARL6IP4Q66PJ3 421 aaKnown RBP17.63■□□□□ 0.41
LIMS1-202ENST00000338045 CKAP2LQ8IYA6 745 aa17.63■□□□□ 0.41
LIMS1-202ENST00000338045 CUL5Q93034 780 aa17.63■□□□□ 0.41
LIMS1-202ENST00000338045 AMNQ9BXJ7 453 aa17.63■□□□□ 0.41
LIMS1-202ENST00000338045 BIN2Q9UBW5 565 aaPredicted RBP17.63■□□□□ 0.41
LIMS1-202ENST00000338045 PCDHA1Q9Y5I3 950 aa17.63■□□□□ 0.41
LIMS1-202ENST00000338045 SSC5DA1L4H1 1573 aa17.63■□□□□ 0.41
LIMS1-202ENST00000338045 ZC3H4Q9UPT8 1303 aaKnown RBP17.63■□□□□ 0.41
LIMS1-202ENST00000338045 MRPL12P52815 198 aaKnown RBP17.63■□□□□ 0.41
LIMS1-202ENST00000338045 IKQ13123 557 aaPredicted RBP17.63■□□□□ 0.41
LIMS1-202ENST00000338045 SCYL3Q8IZE3 742 aa17.63■□□□□ 0.41
LIMS1-202ENST00000338045 CHURC1Q8WUH1 139 aa17.63■□□□□ 0.41
LIMS1-202ENST00000338045 LPAR1Q92633 364 aa17.63■□□□□ 0.41
LIMS1-202ENST00000338045 CSRNP2Q9H175 543 aa17.63■□□□□ 0.41
LIMS1-202ENST00000338045 KCNH3Q9ULD8 1083 aa17.63■□□□□ 0.41
LIMS1-202ENST00000338045 DOCK1Q14185 1865 aa17.62■□□□□ 0.41
LIMS1-202ENST00000338045 ORC2Q13416 577 aaPredicted RBP17.62■□□□□ 0.41
LIMS1-202ENST00000338045 PRAMEF18Q5VWM3 479 aa17.62■□□□□ 0.41
LIMS1-202ENST00000338045 JAKMIP3Q5VZ66 844 aa17.62■□□□□ 0.41
LIMS1-202ENST00000338045 NEK8Q86SG6 692 aa17.62■□□□□ 0.41
LIMS1-202ENST00000338045 FAM160B2Q86V87 743 aa17.62■□□□□ 0.41
LIMS1-202ENST00000338045 FBXO11Q86XK2 927 aa17.62■□□□□ 0.41
LIMS1-202ENST00000338045 PSTPIP2Q9H939 334 aa17.62■□□□□ 0.41
LIMS1-202ENST00000338045 TMEM260Q9NX78 707 aa17.62■□□□□ 0.41
LIMS1-202ENST00000338045 FAM13BQ9NYF5 915 aa17.62■□□□□ 0.41
LIMS1-202ENST00000338045 TYRO3Q06418 890 aa17.61■□□□□ 0.41
LIMS1-202ENST00000338045 ZYXQ15942 572 aaKnown RBP17.61■□□□□ 0.41
LIMS1-202ENST00000338045 SUPT20HL1Q3ZLR7 823 aa17.61■□□□□ 0.41
LIMS1-202ENST00000338045 DPY19L2Q6NUT2 758 aa17.61■□□□□ 0.41
LIMS1-202ENST00000338045 TBCKQ8TEA7 893 aa17.61■□□□□ 0.41
LIMS1-202ENST00000338045 KLRG1Q96E93 195 aa17.61■□□□□ 0.41
LIMS1-202ENST00000338045 FEZ1Q99689 392 aa17.61■□□□□ 0.41
LIMS1-202ENST00000338045 WDR18Q9BV38 432 aa17.61■□□□□ 0.41
LIMS1-202ENST00000338045 FEM1BQ9UK73 627 aa17.61■□□□□ 0.41
LIMS1-202ENST00000338045 LAD1O00515 517 aa17.61■□□□□ 0.41
LIMS1-202ENST00000338045 SPECC1Q5M775 1068 aa17.61■□□□□ 0.41
LIMS1-202ENST00000338045 ELOA2Q8IYF1 753 aaPredicted RBP17.61■□□□□ 0.41
LIMS1-202ENST00000338045 WRNIP1Q96S55 665 aa17.61■□□□□ 0.41
LIMS1-202ENST00000338045 SDF4Q9BRK5 362 aa17.61■□□□□ 0.41
LIMS1-202ENST00000338045 RANBP17Q9H2T7 1088 aaKnown RBP17.61■□□□□ 0.41
LIMS1-202ENST00000338045 WDR46O15213 610 aaKnown RBP17.6■□□□□ 0.41
LIMS1-202ENST00000338045 SNAP25P60880 206 aa17.6■□□□□ 0.41
LIMS1-202ENST00000338045 TRAF1Q13077 416 aa17.6■□□□□ 0.41
LIMS1-202ENST00000338045 IL17AQ16552 155 aa17.6■□□□□ 0.41
LIMS1-202ENST00000338045 TEX2Q8IWB9 1127 aa17.6■□□□□ 0.41
LIMS1-202ENST00000338045 POLR2AP24928 1970 aaKnown RBP17.59■□□□□ 0.41
LIMS1-202ENST00000338045 EDIL3O43854 480 aa17.59■□□□□ 0.41
LIMS1-202ENST00000338045 PRPHP41219 470 aa17.59■□□□□ 0.41
LIMS1-202ENST00000338045 GPR162Q16538 588 aa17.59■□□□□ 0.41
LIMS1-202ENST00000338045 UBE2SQ16763 222 aa17.59■□□□□ 0.41
LIMS1-202ENST00000338045 NOL9Q5SY16 702 aaKnown RBP17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms