RNA–Protein interactions for RNA: ENST00000336180.6

LIMK1-201, Transcript of LIM domain kinase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIMK1, Length 3,219 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-201ENST00000336180 ADGRF4Q8IZF3 695 aa14.28□□□□□ -0.12
LIMK1-201ENST00000336180 CTNND2Q9UQB3 1225 aa14.28□□□□□ -0.12
LIMK1-201ENST00000336180 USP17L15C9J2P7 530 aa14.27□□□□□ -0.12
LIMK1-201ENST00000336180 USP17L13C9JLJ4 530 aa14.27□□□□□ -0.12
LIMK1-201ENST00000336180 USP17L11C9JVI0 530 aa14.27□□□□□ -0.12
LIMK1-201ENST00000336180 USP17L18D6R9N7 530 aa14.27□□□□□ -0.12
LIMK1-201ENST00000336180 USP17L22D6RA61 530 aa14.27□□□□□ -0.12
LIMK1-201ENST00000336180 USP17L17D6RBQ6 530 aa14.27□□□□□ -0.12
LIMK1-201ENST00000336180 USP17L19D6RCP7 530 aa14.27□□□□□ -0.12
LIMK1-201ENST00000336180 USP17L20D6RJB6 530 aa14.27□□□□□ -0.12
LIMK1-201ENST00000336180 USP17L24Q0WX57 530 aa14.27□□□□□ -0.12
LIMK1-201ENST00000336180 ARMCX5Q6P1M9 558 aa14.27□□□□□ -0.12
LIMK1-201ENST00000336180 USP17L6PQ6QN14 398 aa14.27□□□□□ -0.12
LIMK1-201ENST00000336180 LARGE2Q8N3Y3 721 aa14.27□□□□□ -0.12
LIMK1-201ENST00000336180 LAMB1P07942 1786 aa14.27□□□□□ -0.13
LIMK1-201ENST00000336180 CALML3P27482 149 aa14.27□□□□□ -0.13
LIMK1-201ENST00000336180 GNAQP50148 359 aa14.27□□□□□ -0.13
LIMK1-201ENST00000336180 PODNQ7Z5L7 613 aa14.27□□□□□ -0.13
LIMK1-201ENST00000336180 SCN9AQ15858 1988 aa14.26□□□□□ -0.13
LIMK1-201ENST00000336180 STAT6P42226 847 aa14.26□□□□□ -0.13
LIMK1-201ENST00000336180 CERKLQ49MI3 558 aaPredicted RBP14.26□□□□□ -0.13
LIMK1-201ENST00000336180 DTHD1Q6ZMT9 781 aa14.26□□□□□ -0.13
LIMK1-201ENST00000336180 FAM177A1Q8N128 213 aaPredicted RBP14.26□□□□□ -0.13
LIMK1-201ENST00000336180 C4orf32Q8N8J7 132 aa14.26□□□□□ -0.13
LIMK1-201ENST00000336180 FLAD1Q8NFF5 587 aa14.26□□□□□ -0.13
LIMK1-201ENST00000336180 MYH1P12882 1939 aa14.26□□□□□ -0.13
LIMK1-201ENST00000336180 TTLL1O95922 423 aa14.26□□□□□ -0.13
LIMK1-201ENST00000336180 GH2P01242 217 aa14.26□□□□□ -0.13
LIMK1-201ENST00000336180 SLFN14P0C7P3 912 aa14.26□□□□□ -0.13
LIMK1-201ENST00000336180 CCT6AP40227 531 aaKnown RBP14.26□□□□□ -0.13
LIMK1-201ENST00000336180 RRAGBQ5VZM2 374 aa14.26□□□□□ -0.13
LIMK1-201ENST00000336180 SARM1Q6SZW1 724 aa14.26□□□□□ -0.13
LIMK1-201ENST00000336180 ANKS1AQ92625 1134 aa14.26□□□□□ -0.13
LIMK1-201ENST00000336180 MRFAP1L1Q96HT8 127 aa14.26□□□□□ -0.13
LIMK1-201ENST00000336180 JMJD4Q9H9V9 463 aa14.26□□□□□ -0.13
LIMK1-201ENST00000336180 TCP11L1Q9NUJ3 509 aa14.26□□□□□ -0.13
LIMK1-201ENST00000336180 INTS13Q9NVM9 706 aa14.26□□□□□ -0.13
LIMK1-201ENST00000336180 FAM237AA0A1B0GTK4 181 aa14.26□□□□□ -0.13
LIMK1-201ENST00000336180 TRIM49BA6NDI0 452 aa14.26□□□□□ -0.13
LIMK1-201ENST00000336180 SMTNL1A8MU46 457 aa14.26□□□□□ -0.13
LIMK1-201ENST00000336180 SLC37A4O43826 429 aa14.26□□□□□ -0.13
LIMK1-201ENST00000336180 TPM4P67936 248 aa14.26□□□□□ -0.13
LIMK1-201ENST00000336180 PES1O00541 588 aaKnown RBP14.25□□□□□ -0.13
LIMK1-201ENST00000336180 TEX33O43247 280 aa14.25□□□□□ -0.13
LIMK1-201ENST00000336180 ADKP55263 362 aaKnown RBP14.25□□□□□ -0.13
LIMK1-201ENST00000336180 MORC3Q14149 939 aa14.25□□□□□ -0.13
LIMK1-201ENST00000336180 TMC4Q7Z404 712 aa14.25□□□□□ -0.13
LIMK1-201ENST00000336180 POLD4Q9HCU8 107 aa14.25□□□□□ -0.13
LIMK1-201ENST00000336180 MAST2Q6P0Q8 1798 aa14.25□□□□□ -0.13
LIMK1-201ENST00000336180 POTEMA6NI47 508 aa14.25□□□□□ -0.13
LIMK1-201ENST00000336180 PSMD14O00487 310 aa14.25□□□□□ -0.13
LIMK1-201ENST00000336180 CAVIN2O95810 425 aa14.25□□□□□ -0.13
LIMK1-201ENST00000336180 UBA7P41226 1012 aa14.25□□□□□ -0.13
LIMK1-201ENST00000336180 ECE1P42892 770 aa14.25□□□□□ -0.13
LIMK1-201ENST00000336180 REXO1Q8N1G1 1221 aaKnown RBP14.25□□□□□ -0.13
LIMK1-201ENST00000336180 FERMT2Q96AC1 680 aa14.25□□□□□ -0.13
LIMK1-201ENST00000336180 CSRNP1Q96S65 589 aa14.25□□□□□ -0.13
LIMK1-201ENST00000336180 SLC1A4P43007 532 aa14.24□□□□□ -0.13
LIMK1-201ENST00000336180 CCZ1BP86790 482 aa14.24□□□□□ -0.13
LIMK1-201ENST00000336180 CCZ1P86791 482 aaPredicted RBP14.24□□□□□ -0.13
LIMK1-201ENST00000336180 STRIP1Q5VSL9 837 aa14.24□□□□□ -0.13
LIMK1-201ENST00000336180 CCDC148Q8NFR7 591 aa14.24□□□□□ -0.13
LIMK1-201ENST00000336180 C6orf50Q9HD87 102 aa14.24□□□□□ -0.13
LIMK1-201ENST00000336180 HOOK1Q9UJC3 728 aaKnown RBP14.24□□□□□ -0.13
LIMK1-201ENST00000336180 M0R2N6 131 aa14.24□□□□□ -0.13
LIMK1-201ENST00000336180 RAD51AP2Q09MP3 1159 aa14.24□□□□□ -0.13
LIMK1-201ENST00000336180 DGKZQ13574 1117 aa14.24□□□□□ -0.13
LIMK1-201ENST00000336180 NAA30Q147X3 362 aaPredicted RBP14.24□□□□□ -0.13
LIMK1-201ENST00000336180 NONOQ15233 471 aaKnown RBP eCLIP14.24□□□□□ -0.13
LIMK1-201ENST00000336180 ZNF579Q8NAF0 562 aaKnown RBP14.24□□□□□ -0.13
LIMK1-201ENST00000336180 CNKSR1Q969H4 720 aa14.24□□□□□ -0.13
LIMK1-201ENST00000336180 FZD1Q9UP38 647 aa14.24□□□□□ -0.13
LIMK1-201ENST00000336180 CDK5RAP2Q96SN8 1893 aa14.24□□□□□ -0.13
LIMK1-201ENST00000336180 ZNF543Q08ER8 600 aa14.24□□□□□ -0.13
LIMK1-201ENST00000336180 HHIPL2Q6UWX4 724 aa14.24□□□□□ -0.13
LIMK1-201ENST00000336180 ZDHHC15Q96MV8 337 aa14.24□□□□□ -0.13
LIMK1-201ENST00000336180 TMEM39BQ9GZU3 492 aa14.24□□□□□ -0.13
LIMK1-201ENST00000336180 SARSP49591 514 aaKnown RBP14.23□□□□□ -0.13
LIMK1-201ENST00000336180 SF3B2Q13435 895 aaKnown RBP14.23□□□□□ -0.13
LIMK1-201ENST00000336180 IQUBQ8NA54 791 aa14.23□□□□□ -0.13
LIMK1-201ENST00000336180 C7orf43Q8WVR3 580 aa14.23□□□□□ -0.13
LIMK1-201ENST00000336180 NUDT12Q9BQG2 462 aa14.23□□□□□ -0.13
LIMK1-201ENST00000336180 SPZ1Q9BXG8 430 aa14.23□□□□□ -0.13
LIMK1-201ENST00000336180 NEMFO60524 1076 aa14.23□□□□□ -0.13
LIMK1-201ENST00000336180 PLCG1P19174 1290 aa14.23□□□□□ -0.13
LIMK1-201ENST00000336180 ICA1Q05084 483 aa14.23□□□□□ -0.13
LIMK1-201ENST00000336180 E2F4Q16254 413 aa14.23□□□□□ -0.13
LIMK1-201ENST00000336180 SLFN13Q68D06 897 aa14.23□□□□□ -0.13
LIMK1-201ENST00000336180 PDXDC2PQ6P474 469 aa14.23□□□□□ -0.13
LIMK1-201ENST00000336180 ARHGAP30Q7Z6I6 1101 aaPredicted RBP14.23□□□□□ -0.13
LIMK1-201ENST00000336180 ACER1Q8TDN7 264 aa14.23□□□□□ -0.13
LIMK1-201ENST00000336180 ZMYND12Q9H0C1 365 aa14.23□□□□□ -0.13
LIMK1-201ENST00000336180 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.23□□□□□ -0.13
LIMK1-201ENST00000336180 V9GYY5 206 aaPredicted RBP14.23□□□□□ -0.13
LIMK1-201ENST00000336180 MARCH6O60337 910 aa14.22□□□□□ -0.13
LIMK1-201ENST00000336180 EGFRP00533 1210 aa14.22□□□□□ -0.13
LIMK1-201ENST00000336180 TNNT1P13805 278 aa14.22□□□□□ -0.13
LIMK1-201ENST00000336180 HOXA13P31271 388 aaPredicted RBP14.22□□□□□ -0.13
LIMK1-201ENST00000336180 UBXN2AP68543 259 aa14.22□□□□□ -0.13
LIMK1-201ENST00000336180 NAALADL2Q58DX5 795 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms