RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 WDR17Q8IZU2 1322 aa15□□□□□ -0.01
CCDC88C-201ENST00000331194 STK36Q9NRP7 1315 aa15□□□□□ -0.01
CCDC88C-201ENST00000331194 CHUKO15111 745 aa15□□□□□ -0.01
CCDC88C-201ENST00000331194 DEXIO95424 95 aa15□□□□□ -0.01
CCDC88C-201ENST00000331194 RNASE9P60153 205 aaKnown RBP15□□□□□ -0.01
CCDC88C-201ENST00000331194 KRT83P78385 493 aa15□□□□□ -0.01
CCDC88C-201ENST00000331194 DDR1Q08345 913 aa15□□□□□ -0.01
CCDC88C-201ENST00000331194 TRIM14Q14142 442 aa15□□□□□ -0.01
CCDC88C-201ENST00000331194 IL17AQ16552 155 aa15□□□□□ -0.01
CCDC88C-201ENST00000331194 FAM43BQ6ZT52 329 aaPredicted RBP15□□□□□ -0.01
CCDC88C-201ENST00000331194 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15□□□□□ -0.01
CCDC88C-201ENST00000331194 FAM89AQ96GI7 184 aa15□□□□□ -0.01
CCDC88C-201ENST00000331194 SLC24A3Q9HC58 644 aa15□□□□□ -0.01
CCDC88C-201ENST00000331194 SLC40A1Q9NP59 571 aa15□□□□□ -0.01
CCDC88C-201ENST00000331194 GLI1P08151 1106 aa14.99□□□□□ -0.01
CCDC88C-201ENST00000331194 LIFRP42702 1097 aa14.99□□□□□ -0.01
CCDC88C-201ENST00000331194 CCDC70Q6NSX1 233 aa14.99□□□□□ -0.01
CCDC88C-201ENST00000331194 RPAINQ86UA6 219 aa14.99□□□□□ -0.01
CCDC88C-201ENST00000331194 MMGT1Q8N4V1 131 aa14.99□□□□□ -0.01
CCDC88C-201ENST00000331194 ZNF507Q8TCN5 953 aa14.99□□□□□ -0.01
CCDC88C-201ENST00000331194 SGSM3Q96HU1 749 aa14.99□□□□□ -0.01
CCDC88C-201ENST00000331194 EPN3Q9H201 632 aa14.99□□□□□ -0.01
CCDC88C-201ENST00000331194 ARMT1Q9H993 441 aa14.99□□□□□ -0.01
CCDC88C-201ENST00000331194 ODF2LQ9ULJ1 636 aa14.99□□□□□ -0.01
CCDC88C-201ENST00000331194 SPATA31A3Q5VYP0 1347 aa14.99□□□□□ -0.01
CCDC88C-201ENST00000331194 SRCAPQ6ZRS2 3230 aa14.99□□□□□ -0.01
CCDC88C-201ENST00000331194 E7EVH7 732 aa14.99□□□□□ -0.01
CCDC88C-201ENST00000331194 ADAMTS2O95450 1211 aa14.99□□□□□ -0.01
CCDC88C-201ENST00000331194 PHKG2P15735 406 aa14.99□□□□□ -0.01
CCDC88C-201ENST00000331194 ERCC3P19447 782 aa14.99□□□□□ -0.01
CCDC88C-201ENST00000331194 KIF5AQ12840 1032 aa14.99□□□□□ -0.01
CCDC88C-201ENST00000331194 WTAPQ15007 396 aa14.99□□□□□ -0.01
CCDC88C-201ENST00000331194 LRCH2Q5VUJ6 765 aa14.99□□□□□ -0.01
CCDC88C-201ENST00000331194 STRBPQ96SI9 672 aaKnown RBP14.99□□□□□ -0.01
CCDC88C-201ENST00000331194 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.99□□□□□ -0.01
CCDC88C-201ENST00000331194 NAPBQ9H115 298 aa14.99□□□□□ -0.01
CCDC88C-201ENST00000331194 SNAP23O00161 211 aa14.99□□□□□ -0.01
CCDC88C-201ENST00000331194 IRF6O14896 467 aa14.99□□□□□ -0.01
CCDC88C-201ENST00000331194 PDE6AP16499 860 aa14.99□□□□□ -0.01
CCDC88C-201ENST00000331194 EVA1CP58658 441 aa14.99□□□□□ -0.01
CCDC88C-201ENST00000331194 NEDD9Q14511 834 aa14.99□□□□□ -0.01
CCDC88C-201ENST00000331194 FAM228AQ86W67 206 aa14.99□□□□□ -0.01
CCDC88C-201ENST00000331194 IFNL3Q8IZI9 196 aa14.99□□□□□ -0.01
CCDC88C-201ENST00000331194 FANCBQ8NB91 859 aa14.99□□□□□ -0.01
CCDC88C-201ENST00000331194 MYCBPAPQ8TBZ2 947 aa14.99□□□□□ -0.01
CCDC88C-201ENST00000331194 MIEF2Q96C03 454 aa14.99□□□□□ -0.01
CCDC88C-201ENST00000331194 STIM2Q9P246 746 aa14.99□□□□□ -0.01
CCDC88C-201ENST00000331194 SALL4Q9UJQ4 1053 aa14.99□□□□□ -0.01
CCDC88C-201ENST00000331194 LGALS16A8MUM7 142 aa14.98□□□□□ -0.01
CCDC88C-201ENST00000331194 CIAO1O76071 339 aa14.98□□□□□ -0.01
CCDC88C-201ENST00000331194 RPN1P04843 607 aaKnown RBP14.98□□□□□ -0.01
CCDC88C-201ENST00000331194 EPHB4P54760 987 aa14.98□□□□□ -0.01
CCDC88C-201ENST00000331194 SPAG1Q07617 926 aa14.98□□□□□ -0.01
CCDC88C-201ENST00000331194 PTGISQ16647 500 aa14.98□□□□□ -0.01
CCDC88C-201ENST00000331194 PDXDC2PQ6P474 469 aa14.98□□□□□ -0.01
CCDC88C-201ENST00000331194 NLRP14Q86W24 1093 aa14.98□□□□□ -0.01
CCDC88C-201ENST00000331194 PROCA1Q8NCQ7 364 aaPredicted RBP14.98□□□□□ -0.01
CCDC88C-201ENST00000331194 SCLT1Q96NL6 688 aa14.98□□□□□ -0.01
CCDC88C-201ENST00000331194 OSBPL9Q96SU4 736 aa14.98□□□□□ -0.01
CCDC88C-201ENST00000331194 DDX20Q9UHI6 824 aaKnown RBP14.98□□□□□ -0.01
CCDC88C-201ENST00000331194 TBC1D2BQ9UPU7 963 aa14.98□□□□□ -0.01
CCDC88C-201ENST00000331194 V9GY48 417 aaPredicted RBP14.98□□□□□ -0.01
CCDC88C-201ENST00000331194 RASSF9O75901 435 aa14.98□□□□□ -0.01
CCDC88C-201ENST00000331194 IPO7O95373 1038 aaKnown RBP14.98□□□□□ -0.01
CCDC88C-201ENST00000331194 CEP85LQ5SZL2 805 aa14.98□□□□□ -0.01
CCDC88C-201ENST00000331194 TYW1BQ6NUM6 668 aa14.98□□□□□ -0.01
CCDC88C-201ENST00000331194 VCPKMTQ9H867 229 aa14.98□□□□□ -0.01
CCDC88C-201ENST00000331194 NUTM2BA6NNL0 878 aaPredicted RBP14.97□□□□□ -0.01
CCDC88C-201ENST00000331194 NUTM2EB1AL46 878 aaPredicted RBP14.97□□□□□ -0.01
CCDC88C-201ENST00000331194 OPLAHO14841 1288 aa14.97□□□□□ -0.01
CCDC88C-201ENST00000331194 CYP27B1O15528 508 aa14.97□□□□□ -0.01
CCDC88C-201ENST00000331194 SKAP2O75563 359 aaPredicted RBP14.97□□□□□ -0.01
CCDC88C-201ENST00000331194 MBD4O95243 580 aa14.97□□□□□ -0.01
CCDC88C-201ENST00000331194 EPB41P11171 864 aaKnown RBP14.97□□□□□ -0.01
CCDC88C-201ENST00000331194 MCM7P33993 719 aa14.97□□□□□ -0.01
CCDC88C-201ENST00000331194 NF2P35240 595 aa14.97□□□□□ -0.01
CCDC88C-201ENST00000331194 CYLC1P35663 651 aaPredicted RBP14.97□□□□□ -0.01
CCDC88C-201ENST00000331194 CCDC181Q5TID7 509 aa14.97□□□□□ -0.01
CCDC88C-201ENST00000331194 ZNF658Q5TYW1 1059 aaPredicted RBP14.97□□□□□ -0.01
CCDC88C-201ENST00000331194 PIK3R5Q8WYR1 880 aa14.97□□□□□ -0.01
CCDC88C-201ENST00000331194 ARFGEF2Q9Y6D5 1785 aa14.97□□□□□ -0.01
CCDC88C-201ENST00000331194 SIPA1L3O60292 1781 aaPredicted RBP14.97□□□□□ -0.01
CCDC88C-201ENST00000331194 PPP1R37O75864 691 aa14.97□□□□□ -0.01
CCDC88C-201ENST00000331194 RPSAP08865 295 aaKnown RBP14.97□□□□□ -0.01
CCDC88C-201ENST00000331194 TATP17735 454 aaPredicted RBP14.97□□□□□ -0.01
CCDC88C-201ENST00000331194 NR1D1P20393 614 aa14.97□□□□□ -0.01
CCDC88C-201ENST00000331194 PHKA1P46020 1223 aa14.97□□□□□ -0.01
CCDC88C-201ENST00000331194 PREPLQ4J6C6 727 aaPredicted RBP14.97□□□□□ -0.01
CCDC88C-201ENST00000331194 METTL24Q5JXM2 366 aa14.97□□□□□ -0.01
CCDC88C-201ENST00000331194 CFAP58Q5T655 872 aa14.97□□□□□ -0.01
CCDC88C-201ENST00000331194 MFSD6Q6ZSS7 791 aa14.97□□□□□ -0.01
CCDC88C-201ENST00000331194 IQCA1Q86XH1 822 aa14.97□□□□□ -0.01
CCDC88C-201ENST00000331194 EPB41L5Q9HCM4 733 aa14.97□□□□□ -0.01
CCDC88C-201ENST00000331194 HAUS2Q9NVX0 235 aa14.97□□□□□ -0.01
CCDC88C-201ENST00000331194 SLC4A4Q9Y6R1 1079 aa14.97□□□□□ -0.01
CCDC88C-201ENST00000331194 DNM1LO00429 736 aa14.97□□□□□ -0.01
CCDC88C-201ENST00000331194 BUB1O43683 1085 aa14.97□□□□□ -0.01
CCDC88C-201ENST00000331194 VEGFAP15692 232 aaPredicted RBP14.97□□□□□ -0.01
CCDC88C-201ENST00000331194 GUCY2DQ02846 1103 aa14.97□□□□□ -0.01
CCDC88C-201ENST00000331194 PKN1Q16512 942 aa14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms