RNA–Protein interactions for RNA: ENST00000331148.5

CLSTN3-202, Transcript of calsyntenin 3, humanhuman

TSL 1 (best)

Gene CLSTN3, Length 2,288 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-202ENST00000331148 SND1Q7KZF4 910 aaKnown RBP eCLIP20.27■□□□□ 0.831e-9■■■■□ 20
CLSTN3-202ENST00000331148 DNAJC7Q99615 494 aa20.27■□□□□ 0.83
CLSTN3-202ENST00000331148 LRP5O75197 1615 aa20.26■□□□□ 0.83
CLSTN3-202ENST00000331148 PAK1Q13153 545 aa20.26■□□□□ 0.83
CLSTN3-202ENST00000331148 IQCEQ6IPM2 695 aa20.26■□□□□ 0.83
CLSTN3-202ENST00000331148 ZNF662Q6ZS27 426 aa20.26■□□□□ 0.83
CLSTN3-202ENST00000331148 ZSWIM5Q9P217 1185 aa20.26■□□□□ 0.83
CLSTN3-202ENST00000331148 SAMM50Q9Y512 469 aa20.26■□□□□ 0.83
CLSTN3-202ENST00000331148 CCDC196A0A1B0GTZ2 297 aa20.25■□□□□ 0.83
CLSTN3-202ENST00000331148 FAM205CA6NFA0 338 aa20.25■□□□□ 0.83
CLSTN3-202ENST00000331148 IGHMBP2P38935 993 aaKnown RBP20.25■□□□□ 0.83
CLSTN3-202ENST00000331148 MCAMP43121 646 aa20.25■□□□□ 0.83
CLSTN3-202ENST00000331148 SF3B3Q15393 1217 aaKnown RBP20.25■□□□□ 0.83
CLSTN3-202ENST00000331148 KIAA1328Q86T90 577 aa20.25■□□□□ 0.83
CLSTN3-202ENST00000331148 NBPF5PQ86XG9 351 aaPredicted RBP20.25■□□□□ 0.83
CLSTN3-202ENST00000331148 ANKRD18AQ8IVF6 992 aa20.25■□□□□ 0.83
CLSTN3-202ENST00000331148 AMOTL1Q8IY63 956 aa20.25■□□□□ 0.83
CLSTN3-202ENST00000331148 CCDC82Q8N4S0 544 aa20.25■□□□□ 0.83
CLSTN3-202ENST00000331148 SECISBP2LQ93073 1101 aaKnown RBP20.25■□□□□ 0.83
CLSTN3-202ENST00000331148 RRP36Q96EU6 259 aaKnown RBP20.25■□□□□ 0.83
CLSTN3-202ENST00000331148 RGS17Q9UGC6 210 aaPredicted RBP20.25■□□□□ 0.83
CLSTN3-202ENST00000331148 XDHP47989 1333 aa20.25■□□□□ 0.83
CLSTN3-202ENST00000331148 ANO9A1A5B4 782 aa20.25■□□□□ 0.83
CLSTN3-202ENST00000331148 TTC19Q6DKK2 380 aaPredicted RBP20.25■□□□□ 0.83
CLSTN3-202ENST00000331148 TPTE2Q6XPS3 522 aa20.25■□□□□ 0.83
CLSTN3-202ENST00000331148 CRACR2BQ8N4Y2 399 aaPredicted RBP20.25■□□□□ 0.83
CLSTN3-202ENST00000331148 STAMQ92783 540 aa20.25■□□□□ 0.83
CLSTN3-202ENST00000331148 EP400Q96L91 3159 aa20.25■□□□□ 0.83
CLSTN3-202ENST00000331148 KRT86O43790 486 aa20.24■□□□□ 0.83
CLSTN3-202ENST00000331148 CCDC172P0C7W6 258 aa20.24■□□□□ 0.83
CLSTN3-202ENST00000331148 KRT83P78385 493 aa20.24■□□□□ 0.83
CLSTN3-202ENST00000331148 CCDC70Q6NSX1 233 aa20.24■□□□□ 0.83
CLSTN3-202ENST00000331148 WDR59Q6PJI9 974 aa20.24■□□□□ 0.83
CLSTN3-202ENST00000331148 CMTR1Q8N1G2 835 aaKnown RBP20.24■□□□□ 0.83
CLSTN3-202ENST00000331148 NELFBQ8WX92 580 aa20.24■□□□□ 0.83
CLSTN3-202ENST00000331148 CAPN7Q9Y6W3 813 aa20.24■□□□□ 0.83
CLSTN3-202ENST00000331148 OPA1O60313 960 aa20.24■□□□□ 0.83
CLSTN3-202ENST00000331148 SKOR1P84550 965 aa20.24■□□□□ 0.83
CLSTN3-202ENST00000331148 SF3B2Q13435 895 aaKnown RBP20.24■□□□□ 0.83
CLSTN3-202ENST00000331148 AIDAQ96BJ3 306 aa20.24■□□□□ 0.83
CLSTN3-202ENST00000331148 BLZF1Q9H2G9 400 aa20.24■□□□□ 0.83
CLSTN3-202ENST00000331148 LUC7L2Q9Y383 392 aaKnown RBP20.24■□□□□ 0.83
CLSTN3-202ENST00000331148 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.23■□□□□ 0.83
CLSTN3-202ENST00000331148 EPB41P11171 864 aaKnown RBP20.23■□□□□ 0.83
CLSTN3-202ENST00000331148 HMGB2P26583 209 aaKnown RBP20.23■□□□□ 0.83
CLSTN3-202ENST00000331148 FNTAP49354 379 aa20.23■□□□□ 0.83
CLSTN3-202ENST00000331148 FERMT2Q96AC1 680 aa20.23■□□□□ 0.83
CLSTN3-202ENST00000331148 ZNF532Q9HCE3 1301 aa20.23■□□□□ 0.83
CLSTN3-202ENST00000331148 RCCD1A6NED2 376 aa20.23■□□□□ 0.83
CLSTN3-202ENST00000331148 CTDSPL2Q05D32 466 aa20.23■□□□□ 0.83
CLSTN3-202ENST00000331148 UBE3CQ15386 1083 aa20.23■□□□□ 0.83
CLSTN3-202ENST00000331148 PUM3Q15397 648 aaKnown RBP20.23■□□□□ 0.83
CLSTN3-202ENST00000331148 B4GALNT4Q76KP1 1039 aa20.23■□□□□ 0.83
CLSTN3-202ENST00000331148 MMGT1Q8N4V1 131 aa20.23■□□□□ 0.83
CLSTN3-202ENST00000331148 HELBQ8NG08 1087 aaPredicted RBP20.23■□□□□ 0.83
CLSTN3-202ENST00000331148 RUBCNQ92622 972 aa20.23■□□□□ 0.83
CLSTN3-202ENST00000331148 CABS1Q96KC9 395 aa20.23■□□□□ 0.83
CLSTN3-202ENST00000331148 LACRTQ9GZZ8 138 aa20.23■□□□□ 0.83
CLSTN3-202ENST00000331148 PIH1D3Q9NQM4 214 aaKnown RBP20.23■□□□□ 0.83
CLSTN3-202ENST00000331148 VPS54Q9P1Q0 977 aa20.23■□□□□ 0.83
CLSTN3-202ENST00000331148 TACC3Q9Y6A5 838 aa20.23■□□□□ 0.83
CLSTN3-202ENST00000331148 IDEP14735 1019 aa20.22■□□□□ 0.83
CLSTN3-202ENST00000331148 SETQ01105 290 aaPredicted RBP20.22■□□□□ 0.83
CLSTN3-202ENST00000331148 EZH2Q15910 746 aaKnown RBP20.22■□□□□ 0.83
CLSTN3-202ENST00000331148 TTMPQ5BVD1 217 aa20.22■□□□□ 0.83
CLSTN3-202ENST00000331148 C3orf67Q6ZVT6 689 aa20.22■□□□□ 0.83
CLSTN3-202ENST00000331148 MB21D1Q8N884 522 aa20.22■□□□□ 0.83
CLSTN3-202ENST00000331148 LPIN2Q92539 896 aa20.22■□□□□ 0.83
CLSTN3-202ENST00000331148 HINFPQ9BQA5 517 aa20.22■□□□□ 0.83
CLSTN3-202ENST00000331148 JADE2Q9NQC1 790 aa20.22■□□□□ 0.83
CLSTN3-202ENST00000331148 CEP83Q9Y592 693 aa20.22■□□□□ 0.83
CLSTN3-202ENST00000331148 COL24A1Q17RW2 1714 aa20.22■□□□□ 0.83
CLSTN3-202ENST00000331148 NDUFAB1O14561 156 aa20.22■□□□□ 0.83
CLSTN3-202ENST00000331148 IDH1O75874 414 aaKnown RBP20.22■□□□□ 0.83
CLSTN3-202ENST00000331148 KIAA0754O94854 1291 aa20.22■□□□□ 0.83
CLSTN3-202ENST00000331148 FSBPO95073 299 aa20.22■□□□□ 0.83
CLSTN3-202ENST00000331148 TXNRD1Q16881 649 aa20.22■□□□□ 0.83
CLSTN3-202ENST00000331148 TSR1Q2NL82 804 aaKnown RBP20.22■□□□□ 0.83
CLSTN3-202ENST00000331148 NLRP3Q96P20 1036 aa20.22■□□□□ 0.83
CLSTN3-202ENST00000331148 DONSONQ9NYP3 566 aa20.22■□□□□ 0.83
CLSTN3-202ENST00000331148 CAPN11Q9UMQ6 739 aa20.22■□□□□ 0.83
CLSTN3-202ENST00000331148 LGALS16A8MUM7 142 aa20.21■□□□□ 0.83
CLSTN3-202ENST00000331148 MYO1FO00160 1098 aa20.21■□□□□ 0.83
CLSTN3-202ENST00000331148 FGFR2P21802 821 aa20.21■□□□□ 0.83
CLSTN3-202ENST00000331148 PDCLQ13371 301 aa20.21■□□□□ 0.83
CLSTN3-202ENST00000331148 ALX1Q15699 326 aa20.21■□□□□ 0.83
CLSTN3-202ENST00000331148 MEA1Q16626 185 aa20.21■□□□□ 0.83
CLSTN3-202ENST00000331148 EARS2Q5JPH6 523 aaKnown RBP20.21■□□□□ 0.83
CLSTN3-202ENST00000331148 PROM2Q8N271 834 aa20.21■□□□□ 0.83
CLSTN3-202ENST00000331148 HDAC7Q8WUI4 952 aa20.21■□□□□ 0.83
CLSTN3-202ENST00000331148 ARL8AQ96BM9 186 aa20.21■□□□□ 0.83
CLSTN3-202ENST00000331148 SHISA4Q96DD7 197 aa20.21■□□□□ 0.83
CLSTN3-202ENST00000331148 PURBQ96QR8 312 aaKnown RBP20.21■□□□□ 0.83
CLSTN3-202ENST00000331148 EPB41L4AQ9HCS5 686 aaPredicted RBP20.21■□□□□ 0.83
CLSTN3-202ENST00000331148 A1CFQ9NQ94 594 aaKnown RBP20.21■□□□□ 0.83
CLSTN3-202ENST00000331148 A0A1W2PQC6 194 aa20.2■□□□□ 0.82
CLSTN3-202ENST00000331148 A6NNZ2 444 aa20.2■□□□□ 0.82
CLSTN3-202ENST00000331148 PARP1P09874 1014 aaKnown RBP20.2■□□□□ 0.82
CLSTN3-202ENST00000331148 PDE6AP16499 860 aa20.2■□□□□ 0.82
CLSTN3-202ENST00000331148 TUBB8Q3ZCM7 444 aa20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms