RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 BTNL9Q6UXG8 535 aa17.75■□□□□ 0.43
LSM6-201ENST00000296581 KRT25Q7Z3Z0 450 aa17.75■□□□□ 0.43
LSM6-201ENST00000296581 CKAP2LQ8IYA6 745 aa17.75■□□□□ 0.43
LSM6-201ENST00000296581 ACER1Q8TDN7 264 aa17.75■□□□□ 0.43
LSM6-201ENST00000296581 ZNF202O95125 648 aa17.74■□□□□ 0.43
LSM6-201ENST00000296581 ASNSP08243 561 aa17.74■□□□□ 0.43
LSM6-201ENST00000296581 BMP3P12645 472 aa17.74■□□□□ 0.43
LSM6-201ENST00000296581 ECE1P42892 770 aa17.74■□□□□ 0.43
LSM6-201ENST00000296581 COA7Q96BR5 231 aa17.74■□□□□ 0.43
LSM6-201ENST00000296581 TIGD1Q96MW7 591 aa17.74■□□□□ 0.43
LSM6-201ENST00000296581 DEFB129Q9H1M3 183 aa17.74■□□□□ 0.43
LSM6-201ENST00000296581 GRIN1Q05586 938 aa17.74■□□□□ 0.43
LSM6-201ENST00000296581 TRPM4Q8TD43 1214 aa17.74■□□□□ 0.43
LSM6-201ENST00000296581 FERMT2Q96AC1 680 aa17.74■□□□□ 0.43
LSM6-201ENST00000296581 GINM1Q9NU53 330 aa17.74■□□□□ 0.43
LSM6-201ENST00000296581 MRVI1Q9Y6F6 885 aa17.74■□□□□ 0.43
LSM6-201ENST00000296581 YBX3P16989 372 aaKnown RBP eCLIP17.73■□□□□ 0.433e-6■□□□□ 8.1
LSM6-201ENST00000296581 APOBEC3FQ8IUX4 373 aaKnown RBP17.73■□□□□ 0.43
LSM6-201ENST00000296581 NUP88Q99567 741 aaPredicted RBP17.73■□□□□ 0.43
LSM6-201ENST00000296581 GOPCQ9HD26 462 aa17.73■□□□□ 0.43
LSM6-201ENST00000296581 SYKP43405 635 aa17.73■□□□□ 0.43
LSM6-201ENST00000296581 ADCY7P51828 1080 aa17.73■□□□□ 0.43
LSM6-201ENST00000296581 TYRO3Q06418 890 aa17.73■□□□□ 0.43
LSM6-201ENST00000296581 PTGDRQ13258 359 aa17.73■□□□□ 0.43
LSM6-201ENST00000296581 QRICH1Q2TAL8 776 aa17.73■□□□□ 0.43
LSM6-201ENST00000296581 REXO1Q8N1G1 1221 aaKnown RBP17.73■□□□□ 0.43
LSM6-201ENST00000296581 SH2D4AQ9H788 454 aa17.73■□□□□ 0.43
LSM6-201ENST00000296581 CDC37Q16543 378 aaPredicted RBP17.72■□□□□ 0.43
LSM6-201ENST00000296581 ANGEL2Q5VTE6 544 aaKnown RBP17.72■□□□□ 0.43
LSM6-201ENST00000296581 RIC8AQ9NPQ8 531 aa17.72■□□□□ 0.43
LSM6-201ENST00000296581 TMEM232C9JQI7 657 aa17.72■□□□□ 0.43
LSM6-201ENST00000296581 NONOQ15233 471 aaKnown RBP eCLIP17.72■□□□□ 0.43
LSM6-201ENST00000296581 INF2Q27J81 1249 aa17.72■□□□□ 0.43
LSM6-201ENST00000296581 KIAA1755Q5JYT7 1200 aa17.72■□□□□ 0.43
LSM6-201ENST00000296581 SYDE2Q5VT97 1194 aa17.72■□□□□ 0.43
LSM6-201ENST00000296581 C4orf32Q8N8J7 132 aa17.72■□□□□ 0.43
LSM6-201ENST00000296581 TRIM44Q96DX7 344 aaPredicted RBP17.72■□□□□ 0.43
LSM6-201ENST00000296581 CSRNP2Q9H175 543 aa17.72■□□□□ 0.43
LSM6-201ENST00000296581 VCPKMTQ9H867 229 aa17.72■□□□□ 0.43
LSM6-201ENST00000296581 FAM13BQ9NYF5 915 aa17.72■□□□□ 0.43
LSM6-201ENST00000296581 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.72■□□□□ 0.43
LSM6-201ENST00000296581 KCNH3Q9ULD8 1083 aa17.72■□□□□ 0.43
LSM6-201ENST00000296581 MCM7P33993 719 aa17.71■□□□□ 0.43
LSM6-201ENST00000296581 EPS15P42566 896 aa17.71■□□□□ 0.43
LSM6-201ENST00000296581 RNF214Q8ND24 703 aa17.71■□□□□ 0.43
LSM6-201ENST00000296581 RNF181Q9P0P0 153 aa17.71■□□□□ 0.43
LSM6-201ENST00000296581 CTNND1O60716 968 aaKnown RBP17.7■□□□□ 0.42
LSM6-201ENST00000296581 HIRAP54198 1017 aaPredicted RBP17.7■□□□□ 0.42
LSM6-201ENST00000296581 NBPF12Q5TAG4 269 aaPredicted RBP17.7■□□□□ 0.42
LSM6-201ENST00000296581 ARL6IP4Q66PJ3 421 aaKnown RBP17.7■□□□□ 0.42
LSM6-201ENST00000296581 SASS6Q6UVJ0 657 aa17.7■□□□□ 0.42
LSM6-201ENST00000296581 SDF4Q9BRK5 362 aa17.7■□□□□ 0.42
LSM6-201ENST00000296581 ZHX1Q9UKY1 873 aaPredicted RBP17.7■□□□□ 0.42
LSM6-201ENST00000296581 CLK2P49760 499 aaKnown RBP17.7■□□□□ 0.42
LSM6-201ENST00000296581 DCAF15Q66K64 600 aa17.7■□□□□ 0.42
LSM6-201ENST00000296581 SPICE1Q8N0Z3 855 aa17.7■□□□□ 0.42
LSM6-201ENST00000296581 HOOK2Q96ED9 719 aa17.7■□□□□ 0.42
LSM6-201ENST00000296581 BIN2Q9UBW5 565 aaPredicted RBP17.7■□□□□ 0.42
LSM6-201ENST00000296581 PPP2R3BQ9Y5P8 575 aa17.7■□□□□ 0.42
LSM6-201ENST00000296581 DOCK1Q14185 1865 aa17.7■□□□□ 0.42
LSM6-201ENST00000296581 PLA2G6O60733 806 aa17.69■□□□□ 0.42
LSM6-201ENST00000296581 SPECC1Q5M775 1068 aa17.69■□□□□ 0.42
LSM6-201ENST00000296581 ELOA2Q8IYF1 753 aaPredicted RBP17.69■□□□□ 0.42
LSM6-201ENST00000296581 GLT8D2Q9H1C3 349 aa17.69■□□□□ 0.42
LSM6-201ENST00000296581 ZNF112Q9UJU3 913 aa17.69■□□□□ 0.42
LSM6-201ENST00000296581 DDNO94850 711 aaPredicted RBP17.69■□□□□ 0.42
LSM6-201ENST00000296581 MRPL12P52815 198 aaKnown RBP17.69■□□□□ 0.42
LSM6-201ENST00000296581 TERF1P54274 439 aa17.69■□□□□ 0.42
LSM6-201ENST00000296581 ORC2Q13416 577 aaPredicted RBP17.69■□□□□ 0.42
LSM6-201ENST00000296581 UVSSAQ2YD98 709 aa17.69■□□□□ 0.42
LSM6-201ENST00000296581 JAKMIP3Q5VZ66 844 aa17.69■□□□□ 0.42
LSM6-201ENST00000296581 ILDR2Q71H61 639 aa17.69■□□□□ 0.42
LSM6-201ENST00000296581 NEK8Q86SG6 692 aa17.69■□□□□ 0.42
LSM6-201ENST00000296581 CUL5Q93034 780 aa17.69■□□□□ 0.42
LSM6-201ENST00000296581 AMNQ9BXJ7 453 aa17.69■□□□□ 0.42
LSM6-201ENST00000296581 ZNF341Q9BYN7 854 aa17.69■□□□□ 0.42
LSM6-201ENST00000296581 GLIS2Q9BZE0 524 aaPredicted RBP17.69■□□□□ 0.42
LSM6-201ENST00000296581 TMEM260Q9NX78 707 aa17.69■□□□□ 0.42
LSM6-201ENST00000296581 GGA3Q9NZ52 723 aa17.69■□□□□ 0.42
LSM6-201ENST00000296581 PRR12Q9ULL5 1215 aa17.69■□□□□ 0.42
LSM6-201ENST00000296581 STAT2P52630 851 aa17.68■□□□□ 0.42
LSM6-201ENST00000296581 FAM83BQ5T0W9 1011 aa17.68■□□□□ 0.42
LSM6-201ENST00000296581 KRBA2Q6ZNG9 492 aa17.68■□□□□ 0.42
LSM6-201ENST00000296581 PCDHA1Q9Y5I3 950 aa17.68■□□□□ 0.42
LSM6-201ENST00000296581 PITPNM2Q9BZ72 1349 aa17.68■□□□□ 0.42
LSM6-201ENST00000296581 LAD1O00515 517 aa17.68■□□□□ 0.42
LSM6-201ENST00000296581 IKQ13123 557 aaPredicted RBP17.68■□□□□ 0.42
LSM6-201ENST00000296581 USP49Q70CQ1 688 aa17.68■□□□□ 0.42
LSM6-201ENST00000296581 TBCKQ8TEA7 893 aa17.68■□□□□ 0.42
LSM6-201ENST00000296581 PSTPIP2Q9H939 334 aa17.68■□□□□ 0.42
LSM6-201ENST00000296581 KIAA1468Q9P260 1216 aa17.68■□□□□ 0.42
LSM6-201ENST00000296581 IL17AQ16552 155 aa17.67■□□□□ 0.42
LSM6-201ENST00000296581 LONRF3Q496Y0 759 aa17.67■□□□□ 0.42
LSM6-201ENST00000296581 CCDC84Q86UT8 332 aaPredicted RBP17.67■□□□□ 0.42
LSM6-201ENST00000296581 POLR2AP24928 1970 aaKnown RBP17.67■□□□□ 0.42
LSM6-201ENST00000296581 VWA3AA6NCI4 1184 aa17.67■□□□□ 0.42
LSM6-201ENST00000296581 CAVIN2O95810 425 aa17.67■□□□□ 0.42
LSM6-201ENST00000296581 PRPHP41219 470 aa17.67■□□□□ 0.42
LSM6-201ENST00000296581 UTP14CQ5TAP6 766 aaKnown RBP17.67■□□□□ 0.42
LSM6-201ENST00000296581 C9orf131Q5VYM1 1079 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms