RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 LRRC47Q8N1G4 583 aaKnown RBP20.71■□□□□ 0.91
SHKBP1-201ENST00000291842 ATRIPQ8WXE1 791 aa20.71■□□□□ 0.91
SHKBP1-201ENST00000291842 MRPL44Q9H9J2 332 aaKnown RBP20.71■□□□□ 0.91
SHKBP1-201ENST00000291842 RMND1Q9NWS8 449 aa20.71■□□□□ 0.91
SHKBP1-201ENST00000291842 BIN2Q9UBW5 565 aaPredicted RBP20.71■□□□□ 0.91
SHKBP1-201ENST00000291842 SEC63Q9UGP8 760 aaKnown RBP20.71■□□□□ 0.91
SHKBP1-201ENST00000291842 FXR1P51114 621 aaKnown RBP eCLIP20.7■□□□□ 0.9
SHKBP1-201ENST00000291842 JAKMIP3Q5VZ66 844 aa20.7■□□□□ 0.9
SHKBP1-201ENST00000291842 RAD9BQ6WBX8 426 aa20.7■□□□□ 0.9
SHKBP1-201ENST00000291842 CERS3Q8IU89 383 aa20.7■□□□□ 0.9
SHKBP1-201ENST00000291842 FAM163AQ96GL9 167 aaPredicted RBP20.7■□□□□ 0.9
SHKBP1-201ENST00000291842 IRX2Q9BZI1 471 aaPredicted RBP20.7■□□□□ 0.9
SHKBP1-201ENST00000291842 TMEM260Q9NX78 707 aa20.7■□□□□ 0.9
SHKBP1-201ENST00000291842 GAKO14976 1311 aa20.7■□□□□ 0.9
SHKBP1-201ENST00000291842 MYH1P12882 1939 aa20.7■□□□□ 0.9
SHKBP1-201ENST00000291842 GYPCP04921 128 aa20.7■□□□□ 0.9
SHKBP1-201ENST00000291842 HOXA10P31260 410 aaPredicted RBP20.7■□□□□ 0.9
SHKBP1-201ENST00000291842 SLF2Q8IX21 1173 aa20.7■□□□□ 0.9
SHKBP1-201ENST00000291842 TBC1D22AQ8WUA7 517 aa20.7■□□□□ 0.9
SHKBP1-201ENST00000291842 PANX2Q96RD6 677 aa20.7■□□□□ 0.9
SHKBP1-201ENST00000291842 PARP3Q9Y6F1 533 aa20.7■□□□□ 0.9
SHKBP1-201ENST00000291842 KCNJ18B7U540 433 aa20.69■□□□□ 0.9
SHKBP1-201ENST00000291842 PPEF1O14829 653 aaPredicted RBP20.69■□□□□ 0.9
SHKBP1-201ENST00000291842 PMS1P54277 932 aaKnown RBP20.69■□□□□ 0.9
SHKBP1-201ENST00000291842 KCNJ12Q14500 433 aa20.69■□□□□ 0.9
SHKBP1-201ENST00000291842 NONOQ15233 471 aaKnown RBP eCLIP20.69■□□□□ 0.9
SHKBP1-201ENST00000291842 TXNRD1Q16881 649 aa20.69■□□□□ 0.9
SHKBP1-201ENST00000291842 TCP11X2Q5H9J9 407 aa20.69■□□□□ 0.9
SHKBP1-201ENST00000291842 ZNF397Q8NF99 534 aaPredicted RBP20.69■□□□□ 0.9
SHKBP1-201ENST00000291842 C6orf50Q9HD87 102 aa20.69■□□□□ 0.9
SHKBP1-201ENST00000291842 LZTFL1Q9NQ48 299 aa20.69■□□□□ 0.9
SHKBP1-201ENST00000291842 RNF225M0QZC1 329 aaPredicted RBP20.68■□□□□ 0.9
SHKBP1-201ENST00000291842 TECP42680 631 aa20.68■□□□□ 0.9
SHKBP1-201ENST00000291842 COPB1P53618 953 aaKnown RBP20.68■□□□□ 0.9
SHKBP1-201ENST00000291842 SOGA3Q5TF21 947 aa20.68■□□□□ 0.9
SHKBP1-201ENST00000291842 DDX4Q9NQI0 724 aaKnown RBP20.68■□□□□ 0.9
SHKBP1-201ENST00000291842 LIMA1Q9UHB6 759 aaKnown RBP20.68■□□□□ 0.9
SHKBP1-201ENST00000291842 MFAP3LO75121 409 aa20.68■□□□□ 0.9
SHKBP1-201ENST00000291842 SLURP2P0DP57 97 aa20.68■□□□□ 0.9
SHKBP1-201ENST00000291842 AKR1B1P15121 316 aa20.68■□□□□ 0.9
SHKBP1-201ENST00000291842 PLCG1P19174 1290 aa20.68■□□□□ 0.9
SHKBP1-201ENST00000291842 CASQ1P31415 396 aa20.68■□□□□ 0.9
SHKBP1-201ENST00000291842 SCNN1DP51172 638 aa20.68■□□□□ 0.9
SHKBP1-201ENST00000291842 DOK7Q18PE1 504 aa20.68■□□□□ 0.9
SHKBP1-201ENST00000291842 CERS5Q8N5B7 392 aa20.68■□□□□ 0.9
SHKBP1-201ENST00000291842 TBCKQ8TEA7 893 aa20.68■□□□□ 0.9
SHKBP1-201ENST00000291842 EEF2KMTQ96G04 330 aa20.68■□□□□ 0.9
SHKBP1-201ENST00000291842 CRAMP1Q96RY5 1269 aa20.68■□□□□ 0.9
SHKBP1-201ENST00000291842 TRPC5Q9UL62 973 aaPredicted RBP20.68■□□□□ 0.9
SHKBP1-201ENST00000291842 OR52Z1P0C646 297 aa20.67■□□□□ 0.9
SHKBP1-201ENST00000291842 PDHBP11177 359 aa20.67■□□□□ 0.9
SHKBP1-201ENST00000291842 DPP8Q6V1X1 898 aaPredicted RBP20.67■□□□□ 0.9
SHKBP1-201ENST00000291842 KRT25Q7Z3Z0 450 aa20.67■□□□□ 0.9
SHKBP1-201ENST00000291842 CABP7Q86V35 215 aa20.67■□□□□ 0.9
SHKBP1-201ENST00000291842 CCDC12Q8WUD4 166 aaPredicted RBP20.67■□□□□ 0.9
SHKBP1-201ENST00000291842 COA7Q96BR5 231 aa20.67■□□□□ 0.9
SHKBP1-201ENST00000291842 CARD6Q9BX69 1037 aa20.67■□□□□ 0.9
SHKBP1-201ENST00000291842 KLRC4O43908 158 aa20.67■□□□□ 0.9
SHKBP1-201ENST00000291842 GNA11P29992 359 aa20.67■□□□□ 0.9
SHKBP1-201ENST00000291842 ADSSL1Q8N142 457 aa20.67■□□□□ 0.9
SHKBP1-201ENST00000291842 CCSER1Q9C0I3 900 aa20.67■□□□□ 0.9
SHKBP1-201ENST00000291842 GPCPD1Q9NPB8 672 aa20.67■□□□□ 0.9
SHKBP1-201ENST00000291842 NEK8Q86SG6 692 aa20.66■□□□□ 0.9
SHKBP1-201ENST00000291842 IRF2BP1Q8IU81 584 aa20.66■□□□□ 0.9
SHKBP1-201ENST00000291842 KBTBD4Q9NVX7 518 aa20.66■□□□□ 0.9
SHKBP1-201ENST00000291842 MTMR4Q9NYA4 1195 aa20.66■□□□□ 0.9
SHKBP1-201ENST00000291842 TTF2Q9UNY4 1162 aaKnown RBP20.66■□□□□ 0.9
SHKBP1-201ENST00000291842 LRRC10BA6NIK2 292 aa20.66■□□□□ 0.9
SHKBP1-201ENST00000291842 PES1O00541 588 aaKnown RBP20.66■□□□□ 0.9
SHKBP1-201ENST00000291842 CCDC175P0C221 793 aa20.66■□□□□ 0.9
SHKBP1-201ENST00000291842 MNS1Q8NEH6 495 aa20.66■□□□□ 0.9
SHKBP1-201ENST00000291842 NUP88Q99567 741 aaPredicted RBP20.66■□□□□ 0.9
SHKBP1-201ENST00000291842 ADGRG1Q9Y653 693 aa20.66■□□□□ 0.9
SHKBP1-201ENST00000291842 GOLGA6L9A6NEM1 432 aa20.65■□□□□ 0.9
SHKBP1-201ENST00000291842 LAD1O00515 517 aa20.65■□□□□ 0.9
SHKBP1-201ENST00000291842 PRPHP41219 470 aa20.65■□□□□ 0.9
SHKBP1-201ENST00000291842 ARHGAP29Q52LW3 1261 aa20.65■□□□□ 0.9
SHKBP1-201ENST00000291842 POTEDQ86YR6 584 aa20.65■□□□□ 0.9
SHKBP1-201ENST00000291842 SP8Q8IXZ3 490 aa20.65■□□□□ 0.9
SHKBP1-201ENST00000291842 REXO1Q8N1G1 1221 aaKnown RBP20.65■□□□□ 0.9
SHKBP1-201ENST00000291842 QTRT2Q9H974 415 aaKnown RBP20.65■□□□□ 0.9
SHKBP1-201ENST00000291842 UBXN1Q04323 297 aa20.65■□□□□ 0.9
SHKBP1-201ENST00000291842 SLC27A3Q5K4L6 730 aa20.65■□□□□ 0.9
SHKBP1-201ENST00000291842 PROM2Q8N271 834 aa20.65■□□□□ 0.9
SHKBP1-201ENST00000291842 ANKRD20A12PQ8NF67 263 aa20.65■□□□□ 0.9
SHKBP1-201ENST00000291842 FEZ1Q99689 392 aa20.65■□□□□ 0.9
SHKBP1-201ENST00000291842 ZC3H12CQ9C0D7 883 aaKnown RBP20.65■□□□□ 0.9
SHKBP1-201ENST00000291842 HSPA1LP34931 641 aa20.64■□□□□ 0.89
SHKBP1-201ENST00000291842 TXKP42681 527 aa20.64■□□□□ 0.89
SHKBP1-201ENST00000291842 CNGA4Q8IV77 575 aa20.64■□□□□ 0.89
SHKBP1-201ENST00000291842 KIFC2Q96AC6 838 aa20.64■□□□□ 0.89
SHKBP1-201ENST00000291842 USP40Q9NVE5 1235 aa20.64■□□□□ 0.89
SHKBP1-201ENST00000291842 SPAG1Q07617 926 aa20.64■□□□□ 0.89
SHKBP1-201ENST00000291842 SRRTQ9BXP5 876 aaKnown RBP20.64■□□□□ 0.89
SHKBP1-201ENST00000291842 RIOX1Q9H6W3 641 aa20.64■□□□□ 0.89
SHKBP1-201ENST00000291842 DDX41Q9UJV9 622 aaKnown RBP20.64■□□□□ 0.89
SHKBP1-201ENST00000291842 ATP6V0A2Q9Y487 856 aa20.64■□□□□ 0.89
SHKBP1-201ENST00000291842 KLRG2A4D1S0 409 aaPredicted RBP20.63■□□□□ 0.89
SHKBP1-201ENST00000291842 H7C1D1 291 aa20.63■□□□□ 0.89
SHKBP1-201ENST00000291842 TPM1P09493 284 aa20.63■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms