RNA–Protein interactions for RNA: ENST00000282841.9

GGPS1-201, Transcript of geranylgeranyl diphosphate synthase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GGPS1, Length 2,895 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGPS1-201ENST00000282841 USP17L15C9J2P7 530 aa12.54□□□□□ -0.4
GGPS1-201ENST00000282841 USP17L13C9JLJ4 530 aa12.54□□□□□ -0.4
GGPS1-201ENST00000282841 USP17L11C9JVI0 530 aa12.54□□□□□ -0.4
GGPS1-201ENST00000282841 USP17L18D6R9N7 530 aa12.54□□□□□ -0.4
GGPS1-201ENST00000282841 USP17L22D6RA61 530 aa12.54□□□□□ -0.4
GGPS1-201ENST00000282841 USP17L17D6RBQ6 530 aa12.54□□□□□ -0.4
GGPS1-201ENST00000282841 USP17L19D6RCP7 530 aa12.54□□□□□ -0.4
GGPS1-201ENST00000282841 USP17L20D6RJB6 530 aa12.54□□□□□ -0.4
GGPS1-201ENST00000282841 POLR2DO15514 142 aaKnown RBP12.54□□□□□ -0.4
GGPS1-201ENST00000282841 USP17L24Q0WX57 530 aa12.54□□□□□ -0.4
GGPS1-201ENST00000282841 PNOCQ13519 176 aa12.54□□□□□ -0.4
GGPS1-201ENST00000282841 USP17L6PQ6QN14 398 aa12.54□□□□□ -0.4
GGPS1-201ENST00000282841 TEX2Q8IWB9 1127 aa12.54□□□□□ -0.4
GGPS1-201ENST00000282841 ZKSCAN4Q969J2 545 aaPredicted RBP12.54□□□□□ -0.4
GGPS1-201ENST00000282841 TEPSINQ96N21 525 aa12.54□□□□□ -0.4
GGPS1-201ENST00000282841 TMEM60Q9H2L4 133 aa12.54□□□□□ -0.4
GGPS1-201ENST00000282841 A0A087X0B3 334 aa12.54□□□□□ -0.4
GGPS1-201ENST00000282841 CMA1P23946 247 aa12.54□□□□□ -0.4
GGPS1-201ENST00000282841 QRICH1Q2TAL8 776 aa12.54□□□□□ -0.4
GGPS1-201ENST00000282841 C11orf57Q6ZUT1 292 aaPredicted RBP12.54□□□□□ -0.4
GGPS1-201ENST00000282841 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.54□□□□□ -0.4
GGPS1-201ENST00000282841 NYAP2Q9P242 653 aa12.54□□□□□ -0.4
GGPS1-201ENST00000282841 PGAP2Q9UHJ9 254 aa12.54□□□□□ -0.4
GGPS1-201ENST00000282841 USP25Q9UHP3 1055 aa12.54□□□□□ -0.4
GGPS1-201ENST00000282841 KCNH3Q9ULD8 1083 aa12.54□□□□□ -0.4
GGPS1-201ENST00000282841 NPM3O75607 178 aaKnown RBP12.53□□□□□ -0.4
GGPS1-201ENST00000282841 ZNF280AP59817 542 aaPredicted RBP12.53□□□□□ -0.4
GGPS1-201ENST00000282841 SASS6Q6UVJ0 657 aa12.53□□□□□ -0.4
GGPS1-201ENST00000282841 METTL16Q86W50 562 aaKnown RBP12.53□□□□□ -0.4
GGPS1-201ENST00000282841 LZTS2Q9BRK4 669 aa12.53□□□□□ -0.4
GGPS1-201ENST00000282841 RRAGDQ9NQL2 400 aaPredicted RBP12.53□□□□□ -0.4
GGPS1-201ENST00000282841 GGA3Q9NZ52 723 aa12.53□□□□□ -0.4
GGPS1-201ENST00000282841 HERC5Q9UII4 1024 aaKnown RBP12.53□□□□□ -0.4
GGPS1-201ENST00000282841 A0A1W2PQ27 194 aa12.53□□□□□ -0.4
GGPS1-201ENST00000282841 A0A1W2PQ64 194 aa12.53□□□□□ -0.4
GGPS1-201ENST00000282841 A0A1W2PQD8 194 aa12.53□□□□□ -0.4
GGPS1-201ENST00000282841 VGLL3A8MV65 326 aa12.53□□□□□ -0.4
GGPS1-201ENST00000282841 PPP6R2O75170 966 aa12.53□□□□□ -0.4
GGPS1-201ENST00000282841 CCDC192P0DO97 292 aa12.53□□□□□ -0.4
GGPS1-201ENST00000282841 LMNB1P20700 586 aa12.53□□□□□ -0.4
GGPS1-201ENST00000282841 CALML3P27482 149 aa12.53□□□□□ -0.4
GGPS1-201ENST00000282841 TNNI2P48788 182 aa12.53□□□□□ -0.4
GGPS1-201ENST00000282841 RESP18Q5W5W9 173 aa12.53□□□□□ -0.4
GGPS1-201ENST00000282841 CCDC174Q6PII3 467 aa12.53□□□□□ -0.4
GGPS1-201ENST00000282841 KIFC2Q96AC6 838 aa12.53□□□□□ -0.4
GGPS1-201ENST00000282841 NOL7Q9UMY1 257 aaKnown RBP12.53□□□□□ -0.4
GGPS1-201ENST00000282841 H7C1D1 291 aa12.52□□□□□ -0.4
GGPS1-201ENST00000282841 M0R2N6 131 aa12.52□□□□□ -0.4
GGPS1-201ENST00000282841 AP5Z1O43299 807 aa12.52□□□□□ -0.4
GGPS1-201ENST00000282841 CCNT1O60563 726 aaKnown RBP12.52□□□□□ -0.4
GGPS1-201ENST00000282841 PTPREP23469 700 aa12.52□□□□□ -0.4
GGPS1-201ENST00000282841 CAP2P40123 477 aa12.52□□□□□ -0.4
GGPS1-201ENST00000282841 CDC37Q16543 378 aaPredicted RBP12.52□□□□□ -0.4
GGPS1-201ENST00000282841 JMYQ8N9B5 988 aa12.52□□□□□ -0.4
GGPS1-201ENST00000282841 MTMR14Q8NCE2 650 aa12.52□□□□□ -0.4
GGPS1-201ENST00000282841 CNKSR2Q8WXI2 1034 aa12.52□□□□□ -0.4
GGPS1-201ENST00000282841 ZNF341Q9BYN7 854 aa12.52□□□□□ -0.4
GGPS1-201ENST00000282841 ZMYND12Q9H0C1 365 aa12.52□□□□□ -0.4
GGPS1-201ENST00000282841 PCDHA1Q9Y5I3 950 aa12.52□□□□□ -0.4
GGPS1-201ENST00000282841 CNPY4Q8N129 248 aa12.52□□□□□ -0.41
GGPS1-201ENST00000282841 TBCKQ8TEA7 893 aa12.52□□□□□ -0.41
GGPS1-201ENST00000282841 SYMPKQ92797 1274 aaKnown RBP12.52□□□□□ -0.41
GGPS1-201ENST00000282841 MKL1Q969V6 931 aa12.52□□□□□ -0.41
GGPS1-201ENST00000282841 DHX58Q96C10 678 aa12.52□□□□□ -0.41
GGPS1-201ENST00000282841 SERTAD1Q9UHV2 236 aa12.52□□□□□ -0.41
GGPS1-201ENST00000282841 PNMA6FA0A0J9YX94 578 aa12.52□□□□□ -0.41
GGPS1-201ENST00000282841 ZBTB5O15062 677 aa12.52□□□□□ -0.41
GGPS1-201ENST00000282841 CUTAO60888 179 aa12.52□□□□□ -0.41
GGPS1-201ENST00000282841 PRR29P0C7W0 189 aa12.52□□□□□ -0.41
GGPS1-201ENST00000282841 BMP3P12645 472 aa12.52□□□□□ -0.41
GGPS1-201ENST00000282841 HOXA13P31271 388 aaPredicted RBP12.52□□□□□ -0.41
GGPS1-201ENST00000282841 AFMP43652 599 aa12.52□□□□□ -0.41
GGPS1-201ENST00000282841 FAM83AQ86UY5 434 aa12.52□□□□□ -0.41
GGPS1-201ENST00000282841 REXO1Q8N1G1 1221 aaKnown RBP12.52□□□□□ -0.41
GGPS1-201ENST00000282841 CCDC148Q8NFR7 591 aa12.52□□□□□ -0.41
GGPS1-201ENST00000282841 FEZ1Q99689 392 aa12.52□□□□□ -0.41
GGPS1-201ENST00000282841 C6orf50Q9HD87 102 aa12.52□□□□□ -0.41
GGPS1-201ENST00000282841 PHF20L1A8MW92 1017 aa12.51□□□□□ -0.41
GGPS1-201ENST00000282841 GPATCH4Q5T3I0 446 aaKnown RBP12.51□□□□□ -0.41
GGPS1-201ENST00000282841 TBC1D5Q92609 795 aa12.51□□□□□ -0.41
GGPS1-201ENST00000282841 GPRC5DQ9NZD1 345 aa12.51□□□□□ -0.41
GGPS1-201ENST00000282841 SRPRBQ9Y5M8 271 aaKnown RBP12.51□□□□□ -0.41
GGPS1-201ENST00000282841 POLR2AP24928 1970 aaKnown RBP12.51□□□□□ -0.41
GGPS1-201ENST00000282841 LETM1O95202 739 aaPredicted RBP12.51□□□□□ -0.41
GGPS1-201ENST00000282841 TDP2O95551 362 aa12.51□□□□□ -0.41
GGPS1-201ENST00000282841 C9orf131Q5VYM1 1079 aa12.51□□□□□ -0.41
GGPS1-201ENST00000282841 ZNF830Q96NB3 372 aaPredicted RBP12.51□□□□□ -0.41
GGPS1-201ENST00000282841 P2RX7Q99572 595 aaKnown RBP12.51□□□□□ -0.41
GGPS1-201ENST00000282841 CBX8Q9HC52 389 aa12.51□□□□□ -0.41
GGPS1-201ENST00000282841 SH3GLB2Q9NR46 395 aa12.51□□□□□ -0.41
GGPS1-201ENST00000282841 HPSEQ9Y251 543 aa12.51□□□□□ -0.41
GGPS1-201ENST00000282841 LTBP3Q9NS15 1303 aa12.5□□□□□ -0.41
GGPS1-201ENST00000282841 ADCY7P51828 1080 aa12.5□□□□□ -0.41
GGPS1-201ENST00000282841 DPCR1Q3MIW9 517 aa12.5□□□□□ -0.41
GGPS1-201ENST00000282841 CNNM3Q8NE01 707 aa12.5□□□□□ -0.41
GGPS1-201ENST00000282841 DPF2Q92785 391 aa12.5□□□□□ -0.41
GGPS1-201ENST00000282841 RPS12P25398 132 aaKnown RBP12.5□□□□□ -0.41
GGPS1-201ENST00000282841 NT5C2P49902 561 aa12.5□□□□□ -0.41
GGPS1-201ENST00000282841 PSTPIP2Q9H939 334 aa12.5□□□□□ -0.41
GGPS1-201ENST00000282841 ARHGEF10LQ9HCE6 1279 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms