RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 PATL2C9JE40 543 aaKnown RBP9.94□□□□□ -0.82
VPS4B-201ENST00000238497 CDC27P30260 824 aa9.94□□□□□ -0.82
VPS4B-201ENST00000238497 ZNF165P49910 485 aa9.94□□□□□ -0.82
VPS4B-201ENST00000238497 USP14P54578 494 aa9.94□□□□□ -0.82
VPS4B-201ENST00000238497 HERVK_113P62684 666 aa9.94□□□□□ -0.82
VPS4B-201ENST00000238497 RESTQ13127 1097 aa9.94□□□□□ -0.82
VPS4B-201ENST00000238497 WTAPQ15007 396 aa9.94□□□□□ -0.82
VPS4B-201ENST00000238497 ZNF444Q8N0Y2 327 aaPredicted RBP9.94□□□□□ -0.82
VPS4B-201ENST00000238497 ARHGEF10LQ9HCE6 1279 aa9.94□□□□□ -0.82
VPS4B-201ENST00000238497 GABRQQ9UN88 632 aa9.94□□□□□ -0.82
VPS4B-201ENST00000238497 BCRP11274 1271 aa9.94□□□□□ -0.82
VPS4B-201ENST00000238497 FDPSP14324 419 aaKnown RBP9.94□□□□□ -0.82
VPS4B-201ENST00000238497 CTGFP29279 349 aa9.94□□□□□ -0.82
VPS4B-201ENST00000238497 GRK4P32298 578 aa9.94□□□□□ -0.82
VPS4B-201ENST00000238497 GCLCP48506 637 aaPredicted RBP9.94□□□□□ -0.82
VPS4B-201ENST00000238497 C12orf60Q5U649 245 aa9.94□□□□□ -0.82
VPS4B-201ENST00000238497 TATDN1Q6P1N9 297 aa9.94□□□□□ -0.82
VPS4B-201ENST00000238497 ZSCAN16Q9H4T2 348 aaPredicted RBP9.94□□□□□ -0.82
VPS4B-201ENST00000238497 EMILIN3Q9NT22 766 aa9.94□□□□□ -0.82
VPS4B-201ENST00000238497 SWAP70Q9UH65 585 aa9.94□□□□□ -0.82
VPS4B-201ENST00000238497 DOCK2Q92608 1830 aa9.94□□□□□ -0.82
VPS4B-201ENST00000238497 POTEFA5A3E0 1075 aa9.94□□□□□ -0.82
VPS4B-201ENST00000238497 CYP2B6P20813 491 aa9.94□□□□□ -0.82
VPS4B-201ENST00000238497 CTR9Q6PD62 1173 aa9.94□□□□□ -0.82
VPS4B-201ENST00000238497 TMEM179Q6ZVK1 233 aa9.94□□□□□ -0.82
VPS4B-201ENST00000238497 RNF208Q9H0X6 261 aa9.94□□□□□ -0.82
VPS4B-201ENST00000238497 RPAP3Q9H6T3 665 aaPredicted RBP9.94□□□□□ -0.82
VPS4B-201ENST00000238497 EPB41L4AQ9HCS5 686 aaPredicted RBP9.94□□□□□ -0.82
VPS4B-201ENST00000238497 BRCA2P51587 3418 aa9.93□□□□□ -0.82
VPS4B-201ENST00000238497 LETM1O95202 739 aaPredicted RBP9.93□□□□□ -0.82
VPS4B-201ENST00000238497 MTFR1Q15390 333 aa9.93□□□□□ -0.82
VPS4B-201ENST00000238497 FILIP1Q7Z7B0 1213 aa9.93□□□□□ -0.82
VPS4B-201ENST00000238497 ZNF274Q96GC6 653 aaPredicted RBP9.93□□□□□ -0.82
VPS4B-201ENST00000238497 ARPP21Q9UBL0 812 aaPredicted RBP9.93□□□□□ -0.82
VPS4B-201ENST00000238497 GSG1L2A8MUP6 293 aa9.93□□□□□ -0.82
VPS4B-201ENST00000238497 USP17L15C9J2P7 530 aa9.93□□□□□ -0.82
VPS4B-201ENST00000238497 USP17L13C9JLJ4 530 aa9.93□□□□□ -0.82
VPS4B-201ENST00000238497 USP17L11C9JVI0 530 aa9.93□□□□□ -0.82
VPS4B-201ENST00000238497 USP17L18D6R9N7 530 aa9.93□□□□□ -0.82
VPS4B-201ENST00000238497 USP17L22D6RA61 530 aa9.93□□□□□ -0.82
VPS4B-201ENST00000238497 USP17L17D6RBQ6 530 aa9.93□□□□□ -0.82
VPS4B-201ENST00000238497 USP17L19D6RCP7 530 aa9.93□□□□□ -0.82
VPS4B-201ENST00000238497 USP17L20D6RJB6 530 aa9.93□□□□□ -0.82
VPS4B-201ENST00000238497 ADCY3O60266 1144 aa9.93□□□□□ -0.82
VPS4B-201ENST00000238497 VCAM1P19320 739 aa9.93□□□□□ -0.82
VPS4B-201ENST00000238497 EN2P19622 333 aaPredicted RBP9.93□□□□□ -0.82
VPS4B-201ENST00000238497 USP17L24Q0WX57 530 aa9.93□□□□□ -0.82
VPS4B-201ENST00000238497 FAM110CQ1W6H9 321 aa9.93□□□□□ -0.82
VPS4B-201ENST00000238497 APOA5Q6Q788 366 aa9.93□□□□□ -0.82
VPS4B-201ENST00000238497 MB21D2Q8IYB1 491 aaPredicted RBP9.93□□□□□ -0.82
VPS4B-201ENST00000238497 GPRC5AQ8NFJ5 357 aa9.93□□□□□ -0.82
VPS4B-201ENST00000238497 GINM1Q9NU53 330 aa9.93□□□□□ -0.82
VPS4B-201ENST00000238497 CCDC39Q9UFE4 941 aa9.93□□□□□ -0.82
VPS4B-201ENST00000238497 COL2A1P02458 1487 aaPredicted RBP9.92□□□□□ -0.82
VPS4B-201ENST00000238497 NMT2O60551 498 aa9.92□□□□□ -0.82
VPS4B-201ENST00000238497 FLOT1O75955 427 aa9.92□□□□□ -0.82
VPS4B-201ENST00000238497 SLC3A2P08195 630 aaKnown RBP9.92□□□□□ -0.82
VPS4B-201ENST00000238497 UBXN2AP68543 259 aa9.92□□□□□ -0.82
VPS4B-201ENST00000238497 SSRP1Q08945 709 aaKnown RBP9.92□□□□□ -0.82
VPS4B-201ENST00000238497 AKNAD1Q5T1N1 836 aa9.92□□□□□ -0.82
VPS4B-201ENST00000238497 CLIC6Q96NY7 704 aa9.92□□□□□ -0.82
VPS4B-201ENST00000238497 CTDP1Q9Y5B0 961 aaPredicted RBP9.92□□□□□ -0.82
VPS4B-201ENST00000238497 GNAT2P19087 354 aa9.92□□□□□ -0.82
VPS4B-201ENST00000238497 RBM10P98175 930 aaKnown RBP9.92□□□□□ -0.82
VPS4B-201ENST00000238497 GABPAQ06546 454 aa9.92□□□□□ -0.82
VPS4B-201ENST00000238497 SAFBQ15424 915 aaKnown RBP eCLIP9.92□□□□□ -0.82
VPS4B-201ENST00000238497 KRT40Q6A162 431 aa9.92□□□□□ -0.82
VPS4B-201ENST00000238497 METTL16Q86W50 562 aaKnown RBP9.92□□□□□ -0.82
VPS4B-201ENST00000238497 TRIM22Q8IYM9 498 aa9.92□□□□□ -0.82
VPS4B-201ENST00000238497 CCDC17Q96LX7 622 aa9.92□□□□□ -0.82
VPS4B-201ENST00000238497 IVNS1ABPQ9Y6Y0 642 aa9.92□□□□□ -0.82
VPS4B-201ENST00000238497 A0A1W2PRG0 241 aa9.92□□□□□ -0.82
VPS4B-201ENST00000238497 GUCY1A2P33402 732 aa9.92□□□□□ -0.82
VPS4B-201ENST00000238497 CLCN1P35523 988 aa9.92□□□□□ -0.82
VPS4B-201ENST00000238497 IKQ13123 557 aaPredicted RBP9.92□□□□□ -0.82
VPS4B-201ENST00000238497 SH3D19Q5HYK7 790 aa9.92□□□□□ -0.82
VPS4B-201ENST00000238497 NBPF3Q9H094 633 aa9.92□□□□□ -0.82
VPS4B-201ENST00000238497 SH2D4AQ9H788 454 aa9.92□□□□□ -0.82
VPS4B-201ENST00000238497 TXNRD2Q9NNW7 524 aa9.92□□□□□ -0.82
VPS4B-201ENST00000238497 PCDHA7Q9UN72 937 aa9.92□□□□□ -0.82
VPS4B-201ENST00000238497 SLC45A1Q9Y2W3 748 aa9.92□□□□□ -0.82
VPS4B-201ENST00000238497 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP9.92□□□□□ -0.82
VPS4B-201ENST00000238497 BTBD18B2RXH4 712 aa9.91□□□□□ -0.82
VPS4B-201ENST00000238497 KIF28PB7ZC32 967 aa9.91□□□□□ -0.82
VPS4B-201ENST00000238497 GNRH1P01148 92 aa9.91□□□□□ -0.82
VPS4B-201ENST00000238497 EEF2P13639 858 aaKnown RBP9.91□□□□□ -0.82
VPS4B-201ENST00000238497 RTN1Q16799 776 aa9.91□□□□□ -0.82
VPS4B-201ENST00000238497 PTPN21Q16825 1174 aa9.91□□□□□ -0.82
VPS4B-201ENST00000238497 KIAA1683Q9H0B3 1180 aa9.91□□□□□ -0.82
VPS4B-201ENST00000238497 GOLPH3LQ9H4A5 285 aa9.91□□□□□ -0.82
VPS4B-201ENST00000238497 ZNF287Q9HBT7 754 aa9.91□□□□□ -0.82
VPS4B-201ENST00000238497 TSPY2A6NKD2 308 aa9.91□□□□□ -0.82
VPS4B-201ENST00000238497 SPTLC2O15270 562 aa9.91□□□□□ -0.82
VPS4B-201ENST00000238497 TSPY3P0CV98 308 aa9.91□□□□□ -0.82
VPS4B-201ENST00000238497 TSPY8P0CW00 308 aa9.91□□□□□ -0.82
VPS4B-201ENST00000238497 PRMT2P55345 433 aa9.91□□□□□ -0.82
VPS4B-201ENST00000238497 PDE4BQ07343 736 aa9.91□□□□□ -0.82
VPS4B-201ENST00000238497 PPARAQ07869 468 aa9.91□□□□□ -0.82
VPS4B-201ENST00000238497 FBXO18Q8NFZ0 1043 aa9.91□□□□□ -0.82
VPS4B-201ENST00000238497 PPP1R9BQ96SB3 815 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms