RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 C16orf86Q6ZW13 317 aa21.01■□□□□ 0.95
CLN3-263ENST00000637871 CCDC82Q8N4S0 544 aa21.01■□□□□ 0.95
CLN3-263ENST00000637871 MYH1P12882 1939 aa21.01■□□□□ 0.95
CLN3-263ENST00000637871 SMTNL1A8MU46 457 aa21■□□□□ 0.95
CLN3-263ENST00000637871 TOMM70O94826 608 aa21■□□□□ 0.95
CLN3-263ENST00000637871 TOB1P50616 345 aaPredicted RBP21■□□□□ 0.95
CLN3-263ENST00000637871 DHX8Q14562 1220 aaKnown RBP21■□□□□ 0.95
CLN3-263ENST00000637871 GRM4Q14833 912 aa21■□□□□ 0.95
CLN3-263ENST00000637871 SH3BP5LQ7L8J4 393 aa21■□□□□ 0.95
CLN3-263ENST00000637871 FERMT2Q96AC1 680 aa21■□□□□ 0.95
CLN3-263ENST00000637871 EIF2AK3Q9NZJ5 1116 aaKnown RBP21■□□□□ 0.95
CLN3-263ENST00000637871 TUBE1Q9UJT0 475 aa21■□□□□ 0.95
CLN3-263ENST00000637871 SMIM22K7EJ46 135 aa21■□□□□ 0.95
CLN3-263ENST00000637871 PLEKHA8P1O95397 391 aa21■□□□□ 0.95
CLN3-263ENST00000637871 PLA2G4DQ86XP0 818 aa21■□□□□ 0.95
CLN3-263ENST00000637871 SRBD1Q8N5C6 995 aaKnown RBP21■□□□□ 0.95
CLN3-263ENST00000637871 PNMA1Q8ND90 353 aa21■□□□□ 0.95
CLN3-263ENST00000637871 NEDD1Q8NHV4 660 aa21■□□□□ 0.95
CLN3-263ENST00000637871 TRIM5Q9C035 493 aa21■□□□□ 0.95
CLN3-263ENST00000637871 OSBPL5Q9H0X9 879 aaPredicted RBP21■□□□□ 0.95
CLN3-263ENST00000637871 KCNH3Q9ULD8 1083 aa21■□□□□ 0.95
CLN3-263ENST00000637871 FZD1Q9UP38 647 aa21■□□□□ 0.95
CLN3-263ENST00000637871 SIPA1L1O43166 1804 aa20.99■□□□□ 0.95
CLN3-263ENST00000637871 SSC5DA1L4H1 1573 aa20.99■□□□□ 0.95
CLN3-263ENST00000637871 DDTLA6NHG4 134 aaPredicted RBP20.99■□□□□ 0.95
CLN3-263ENST00000637871 OFD1O75665 1012 aa20.99■□□□□ 0.95
CLN3-263ENST00000637871 ZNF75DP51815 510 aa20.99■□□□□ 0.95
CLN3-263ENST00000637871 TNFAIP1Q13829 316 aa20.99■□□□□ 0.95
CLN3-263ENST00000637871 CDCA5Q96FF9 252 aa20.99■□□□□ 0.95
CLN3-263ENST00000637871 MRFAP1L1Q96HT8 127 aa20.99■□□□□ 0.95
CLN3-263ENST00000637871 TEPSINQ96N21 525 aa20.99■□□□□ 0.95
CLN3-263ENST00000637871 PYM1Q9BRP8 204 aaKnown RBP20.99■□□□□ 0.95
CLN3-263ENST00000637871 FBXO2Q9UK22 296 aaPredicted RBP20.99■□□□□ 0.95
CLN3-263ENST00000637871 ITGBL1O95965 494 aaPredicted RBP20.98■□□□□ 0.95
CLN3-263ENST00000637871 TNNI2P48788 182 aa20.98■□□□□ 0.95
CLN3-263ENST00000637871 PPP4R3BQ5MIZ7 849 aa20.98■□□□□ 0.95
CLN3-263ENST00000637871 NBPF12Q5TAG4 269 aaPredicted RBP20.98■□□□□ 0.95
CLN3-263ENST00000637871 FKBP1CQ5VVH2 108 aa20.98■□□□□ 0.95
CLN3-263ENST00000637871 ZSCAN29Q8IWY8 852 aaPredicted RBP20.98■□□□□ 0.95
CLN3-263ENST00000637871 SMC1BQ8NDV3 1235 aa20.98■□□□□ 0.95
CLN3-263ENST00000637871 RBM46Q8TBY0 533 aaKnown RBP20.98■□□□□ 0.95
CLN3-263ENST00000637871 FAM151AQ8WW52 585 aa20.98■□□□□ 0.95
CLN3-263ENST00000637871 ZNF408Q9H9D4 720 aa20.98■□□□□ 0.95
CLN3-263ENST00000637871 CABP5Q9NP86 173 aa20.98■□□□□ 0.95
CLN3-263ENST00000637871 IL17RBQ9NRM6 502 aa20.98■□□□□ 0.95
CLN3-263ENST00000637871 VPS54Q9P1Q0 977 aa20.98■□□□□ 0.95
CLN3-263ENST00000637871 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP20.98■□□□□ 0.95
CLN3-263ENST00000637871 MYH6P13533 1939 aa20.97■□□□□ 0.95
CLN3-263ENST00000637871 RASA1P20936 1047 aa20.97■□□□□ 0.95
CLN3-263ENST00000637871 TERF1P54274 439 aa20.97■□□□□ 0.95
CLN3-263ENST00000637871 KRBA2Q6ZNG9 492 aa20.97■□□□□ 0.95
CLN3-263ENST00000637871 FAM83AQ86UY5 434 aa20.97■□□□□ 0.95
CLN3-263ENST00000637871 CMTR1Q8N1G2 835 aaKnown RBP20.97■□□□□ 0.95
CLN3-263ENST00000637871 UBE2Q2LH0YL09 131 aa20.96■□□□□ 0.95
CLN3-263ENST00000637871 AP5Z1O43299 807 aa20.96■□□□□ 0.95
CLN3-263ENST00000637871 ENTPD3O75355 529 aa20.96■□□□□ 0.95
CLN3-263ENST00000637871 CDK8P49336 464 aa20.96■□□□□ 0.95
CLN3-263ENST00000637871 NR5A1Q13285 461 aa20.96■□□□□ 0.95
CLN3-263ENST00000637871 CNNM3Q8NE01 707 aa20.96■□□□□ 0.95
CLN3-263ENST00000637871 CCDC148Q8NFR7 591 aa20.96■□□□□ 0.95
CLN3-263ENST00000637871 FAM196BA6NMK8 535 aa20.96■□□□□ 0.95
CLN3-263ENST00000637871 IKBKBO14920 756 aa20.96■□□□□ 0.95
CLN3-263ENST00000637871 NOVP48745 357 aa20.96■□□□□ 0.95
CLN3-263ENST00000637871 NLRP5P59047 1200 aa20.96■□□□□ 0.95
CLN3-263ENST00000637871 PRKG1Q13976 671 aa20.96■□□□□ 0.95
CLN3-263ENST00000637871 C11orf57Q6ZUT1 292 aaPredicted RBP20.96■□□□□ 0.95
CLN3-263ENST00000637871 TNFRSF25Q93038 417 aa20.96■□□□□ 0.95
CLN3-263ENST00000637871 NEMFO60524 1076 aa20.95■□□□□ 0.94
CLN3-263ENST00000637871 NMT2O60551 498 aa20.95■□□□□ 0.94
CLN3-263ENST00000637871 PLCD1P51178 756 aa20.95■□□□□ 0.94
CLN3-263ENST00000637871 CT47A1Q5JQC4 288 aaPredicted RBP20.95■□□□□ 0.94
CLN3-263ENST00000637871 OXER1Q8TDS5 423 aa20.95■□□□□ 0.94
CLN3-263ENST00000637871 CCDC12Q8WUD4 166 aaPredicted RBP20.95■□□□□ 0.94
CLN3-263ENST00000637871 DYNLL2Q96FJ2 89 aa20.95■□□□□ 0.94
CLN3-263ENST00000637871 CSRNP1Q96S65 589 aa20.95■□□□□ 0.94
CLN3-263ENST00000637871 SWAP70Q9UH65 585 aa20.95■□□□□ 0.94
CLN3-263ENST00000637871 PCDHB6Q9Y5E3 794 aa20.95■□□□□ 0.94
CLN3-263ENST00000637871 TOP1P11387 765 aaKnown RBP20.94■□□□□ 0.94
CLN3-263ENST00000637871 DHX40Q8IX18 779 aaKnown RBP20.94■□□□□ 0.94
CLN3-263ENST00000637871 TRIML1Q8N9V2 468 aa20.94■□□□□ 0.94
CLN3-263ENST00000637871 DAGLBQ8NCG7 672 aa20.94■□□□□ 0.94
CLN3-263ENST00000637871 PIBF1Q8WXW3 757 aa20.94■□□□□ 0.94
CLN3-263ENST00000637871 SPZ1Q9BXG8 430 aa20.94■□□□□ 0.94
CLN3-263ENST00000637871 PPP2R3BQ9Y5P8 575 aa20.94■□□□□ 0.94
CLN3-263ENST00000637871 PLIN4Q96Q06 1357 aa20.94■□□□□ 0.94
CLN3-263ENST00000637871 PALM3A6NDB9 673 aaPredicted RBP20.93■□□□□ 0.94
CLN3-263ENST00000637871 MOB2Q70IA6 237 aa20.93■□□□□ 0.94
CLN3-263ENST00000637871 MIGA2Q7L4E1 593 aa20.93■□□□□ 0.94
CLN3-263ENST00000637871 DACH1Q9UI36 760 aa20.93■□□□□ 0.94
CLN3-263ENST00000637871 ATRNL1Q5VV63 1379 aa20.93■□□□□ 0.94
CLN3-263ENST00000637871 TRPM7Q96QT4 1865 aa20.93■□□□□ 0.94
CLN3-263ENST00000637871 PASKQ96RG2 1323 aa20.93■□□□□ 0.94
CLN3-263ENST00000637871 NPM3O75607 178 aaKnown RBP20.93■□□□□ 0.94
CLN3-263ENST00000637871 DRC7Q8IY82 874 aa20.93■□□□□ 0.94
CLN3-263ENST00000637871 CLIC6Q96NY7 704 aa20.93■□□□□ 0.94
CLN3-263ENST00000637871 TMEM47Q9BQJ4 181 aa20.93■□□□□ 0.94
CLN3-263ENST00000637871 COL2A1P02458 1487 aaPredicted RBP20.92■□□□□ 0.94
CLN3-263ENST00000637871 hCG_1984214I3L0E3 225 aa20.92■□□□□ 0.94
CLN3-263ENST00000637871 CELF2O95319 508 aaKnown RBP20.92■□□□□ 0.94
CLN3-263ENST00000637871 NPY5RQ15761 445 aa20.92■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms