RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	SLC16A2	P36021	539 aa		13.55	□□□□□ -0.24
CLN6-223	ENST00000637823	NLRP5	P59047	1200 aa		13.55	□□□□□ -0.24
CLN6-223	ENST00000637823	PRKG1	Q13976	671 aa		13.55	□□□□□ -0.24
CLN6-223	ENST00000637823	KIAA1755	Q5JYT7	1200 aa		13.55	□□□□□ -0.24
CLN6-223	ENST00000637823	SYDE2	Q5VT97	1194 aa		13.55	□□□□□ -0.24
CLN6-223	ENST00000637823	WWC2	Q6AWC2	1192 aa		13.55	□□□□□ -0.24
CLN6-223	ENST00000637823	FAM173B	Q6P4H8	233 aa		13.55	□□□□□ -0.24
CLN6-223	ENST00000637823	HEATR3	Q7Z4Q2	680 aa		13.55	□□□□□ -0.24
CLN6-223	ENST00000637823	CCDC84	Q86UT8	332 aa	Predicted RBP	13.55	□□□□□ -0.24
CLN6-223	ENST00000637823	DIS3L2	Q8IYB7	885 aa	Known RBP	13.55	□□□□□ -0.24
CLN6-223	ENST00000637823	SPICE1	Q8N0Z3	855 aa		13.55	□□□□□ -0.24
CLN6-223	ENST00000637823	ZNF280C	Q8ND82	737 aa		13.55	□□□□□ -0.24
CLN6-223	ENST00000637823	SHISA4	Q96DD7	197 aa		13.55	□□□□□ -0.24
CLN6-223	ENST00000637823	CHAMP1	Q96JM3	812 aa		13.55	□□□□□ -0.24
CLN6-223	ENST00000637823	NUP88	Q99567	741 aa	Predicted RBP	13.55	□□□□□ -0.24
CLN6-223	ENST00000637823	FEZ1	Q99689	392 aa		13.55	□□□□□ -0.24
CLN6-223	ENST00000637823	SCAND2P	Q9GZW5	306 aa	Predicted RBP	13.55	□□□□□ -0.24
CLN6-223	ENST00000637823	FZD1	Q9UP38	647 aa		13.55	□□□□□ -0.24
CLN6-223	ENST00000637823	CNPY2	Q9Y2B0	182 aa		13.55	□□□□□ -0.24
CLN6-223	ENST00000637823	CSAD	Q9Y600	493 aa		13.55	□□□□□ -0.24
CLN6-223	ENST00000637823	BTBD18	B2RXH4	712 aa		13.54	□□□□□ -0.24
CLN6-223	ENST00000637823	C19orf81	C9J6K1	198 aa		13.54	□□□□□ -0.24
CLN6-223	ENST00000637823	ZBTB5	O15062	677 aa		13.54	□□□□□ -0.24
CLN6-223	ENST00000637823	WDR46	O15213	610 aa	Known RBP	13.54	□□□□□ -0.24
CLN6-223	ENST00000637823	PRPF40A	O75400	957 aa	Known RBP	13.54	□□□□□ -0.24
CLN6-223	ENST00000637823	NCL	P19338	710 aa	Known RBP	13.54	□□□□□ -0.24
CLN6-223	ENST00000637823	BACE1	P56817	501 aa		13.54	□□□□□ -0.24
CLN6-223	ENST00000637823	SPP2	Q13103	211 aa		13.54	□□□□□ -0.24
CLN6-223	ENST00000637823	IK	Q13123	557 aa	Predicted RBP	13.54	□□□□□ -0.24
CLN6-223	ENST00000637823	MAP3K11	Q16584	847 aa		13.54	□□□□□ -0.24
CLN6-223	ENST00000637823	FAM83B	Q5T0W9	1011 aa		13.54	□□□□□ -0.24
CLN6-223	ENST00000637823	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	13.54	□□□□□ -0.24
CLN6-223	ENST00000637823	FAM160B2	Q86V87	743 aa		13.54	□□□□□ -0.24
CLN6-223	ENST00000637823	HOMER1	Q86YM7	354 aa		13.54	□□□□□ -0.24
CLN6-223	ENST00000637823	NOSTRIN	Q8IVI9	506 aa		13.54	□□□□□ -0.24
CLN6-223	ENST00000637823	TMEM87A	Q8NBN3	555 aa		13.54	□□□□□ -0.24
CLN6-223	ENST00000637823	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	13.54	□□□□□ -0.24
CLN6-223	ENST00000637823	LMBRD1	Q9NUN5	540 aa		13.54	□□□□□ -0.24
CLN6-223	ENST00000637823	TFIP11	Q9UBB9	837 aa	Known RBP	13.54	□□□□□ -0.24
CLN6-223	ENST00000637823	FEM1B	Q9UK73	627 aa		13.54	□□□□□ -0.24
CLN6-223	ENST00000637823	ZHX2	Q9Y6X8	837 aa		13.54	□□□□□ -0.24
CLN6-223	ENST00000637823	PTPRF	P10586	1907 aa		13.53	□□□□□ -0.24
CLN6-223	ENST00000637823	STAT2	P52630	851 aa		13.53	□□□□□ -0.24
CLN6-223	ENST00000637823	TRAF1	Q13077	416 aa		13.53	□□□□□ -0.24
CLN6-223	ENST00000637823	NBR1	Q14596	966 aa		13.53	□□□□□ -0.24
CLN6-223	ENST00000637823	NPY5R	Q15761	445 aa		13.53	□□□□□ -0.24
CLN6-223	ENST00000637823	ZYX	Q15942	572 aa	Known RBP	13.53	□□□□□ -0.24
CLN6-223	ENST00000637823	SKOR2	Q2VWA4	1001 aa	Predicted RBP	13.53	□□□□□ -0.24
CLN6-223	ENST00000637823	MYSM1	Q5VVJ2	828 aa		13.53	□□□□□ -0.24
CLN6-223	ENST00000637823	PPP1R18	Q6NYC8	613 aa		13.53	□□□□□ -0.24
CLN6-223	ENST00000637823	ARMC9	Q7Z3E5	817 aa		13.53	□□□□□ -0.24
CLN6-223	ENST00000637823	LDHD	Q86WU2	507 aa		13.53	□□□□□ -0.24
CLN6-223	ENST00000637823	BLID	Q8IZY5	108 aa		13.53	□□□□□ -0.24
CLN6-223	ENST00000637823	DAGLB	Q8NCG7	672 aa		13.53	□□□□□ -0.24
CLN6-223	ENST00000637823	ZMYND12	Q9H0C1	365 aa		13.53	□□□□□ -0.24
CLN6-223	ENST00000637823	C6orf50	Q9HD87	102 aa		13.53	□□□□□ -0.24
CLN6-223	ENST00000637823	PCDHA4	Q9UN74	947 aa		13.53	□□□□□ -0.24
CLN6-223	ENST00000637823	SNCAIP	Q9Y6H5	919 aa		13.53	□□□□□ -0.24
CLN6-223	ENST00000637823	PARP14	Q460N5	1801 aa		13.53	□□□□□ -0.24
CLN6-223	ENST00000637823	UTRN	P46939	3433 aa		13.52	□□□□□ -0.24
CLN6-223	ENST00000637823	ESYT2	A0FGR8	921 aa		13.52	□□□□□ -0.25
CLN6-223	ENST00000637823	UNCX	A6NJT0	531 aa		13.52	□□□□□ -0.25
CLN6-223	ENST00000637823	POTEI	P0CG38	1075 aa		13.52	□□□□□ -0.25
CLN6-223	ENST00000637823	POTEJ	P0CG39	1038 aa		13.52	□□□□□ -0.25
CLN6-223	ENST00000637823	GNA11	P29992	359 aa		13.52	□□□□□ -0.25
CLN6-223	ENST00000637823	NAPA	P54920	295 aa		13.52	□□□□□ -0.25
CLN6-223	ENST00000637823	MTMR2	Q13614	643 aa		13.52	□□□□□ -0.25
CLN6-223	ENST00000637823	VGLL4	Q14135	290 aa		13.52	□□□□□ -0.25
CLN6-223	ENST00000637823	TTLL12	Q14166	644 aa	Predicted RBP	13.52	□□□□□ -0.25
CLN6-223	ENST00000637823	QRICH1	Q2TAL8	776 aa		13.52	□□□□□ -0.25
CLN6-223	ENST00000637823	MAP1S	Q66K74	1059 aa	Predicted RBP	13.52	□□□□□ -0.25
CLN6-223	ENST00000637823	ANKRD13A	Q8IZ07	590 aa		13.52	□□□□□ -0.25
CLN6-223	ENST00000637823	RBM46	Q8TBY0	533 aa	Known RBP	13.52	□□□□□ -0.25
CLN6-223	ENST00000637823	OXER1	Q8TDS5	423 aa		13.52	□□□□□ -0.25
CLN6-223	ENST00000637823	C12orf42	Q96LP6	360 aa		13.52	□□□□□ -0.25
CLN6-223	ENST00000637823	EMILIN3	Q9NT22	766 aa		13.52	□□□□□ -0.25
CLN6-223	ENST00000637823	RTEL1	Q9NZ71	1219 aa		13.52	□□□□□ -0.25
CLN6-223	ENST00000637823	RCOR1	Q9UKL0	485 aa		13.52	□□□□□ -0.25
CLN6-223	ENST00000637823	PRR12	Q9ULL5	1215 aa		13.52	□□□□□ -0.25
CLN6-223	ENST00000637823	AFG3L2	Q9Y4W6	797 aa		13.52	□□□□□ -0.25
CLN6-223	ENST00000637823	SMCHD1	A6NHR9	2005 aa		13.52	□□□□□ -0.25
CLN6-223	ENST00000637823	TRPM7	Q96QT4	1865 aa		13.51	□□□□□ -0.25
CLN6-223	ENST00000637823	ELP1	O95163	1332 aa		13.51	□□□□□ -0.25
CLN6-223	ENST00000637823	SMCO2	A6NFE2	343 aa		13.51	□□□□□ -0.25
CLN6-223	ENST00000637823	FIBP	O43427	364 aa		13.51	□□□□□ -0.25
CLN6-223	ENST00000637823	NR5A1	Q13285	461 aa		13.51	□□□□□ -0.25
CLN6-223	ENST00000637823	CDC37	Q16543	378 aa	Predicted RBP	13.51	□□□□□ -0.25
CLN6-223	ENST00000637823	TYW1B	Q6NUM6	668 aa		13.51	□□□□□ -0.25
CLN6-223	ENST00000637823	BICD2	Q8TD16	824 aa		13.51	□□□□□ -0.25
CLN6-223	ENST00000637823	TNFRSF25	Q93038	417 aa		13.51	□□□□□ -0.25
CLN6-223	ENST00000637823	COA7	Q96BR5	231 aa		13.51	□□□□□ -0.25
CLN6-223	ENST00000637823	SPATA32	Q96LK8	384 aa		13.51	□□□□□ -0.25
CLN6-223	ENST00000637823	GLT8D2	Q9H1C3	349 aa		13.51	□□□□□ -0.25
CLN6-223	ENST00000637823	GDPD2	Q9HCC8	539 aa		13.51	□□□□□ -0.25
CLN6-223	ENST00000637823	PPP1R11	O60927	126 aa	Predicted RBP	13.5	□□□□□ -0.25
CLN6-223	ENST00000637823	PPAT	Q06203	517 aa		13.5	□□□□□ -0.25
CLN6-223	ENST00000637823	RILPL1	Q5EBL4	403 aa		13.5	□□□□□ -0.25
CLN6-223	ENST00000637823	SH3D19	Q5HYK7	790 aa		13.5	□□□□□ -0.25
CLN6-223	ENST00000637823	LDLRAD1	Q5T700	205 aa		13.5	□□□□□ -0.25
CLN6-223	ENST00000637823	PPP4R3CP	Q6ZMV5	832 aa		13.5	□□□□□ -0.25

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