RNA–Protein interactions for RNA: ENST00000588131.1

VMP1-207, Transcript of vacuole membrane protein 1, humanhuman

TSL 2

Gene VMP1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-207ENST00000588131 JMJD4Q9H9V9 463 aa13.08□□□□□ -0.32
VMP1-207ENST00000588131 VPS54Q9P1Q0 977 aa13.08□□□□□ -0.32
VMP1-207ENST00000588131 AFG3L2Q9Y4W6 797 aa13.08□□□□□ -0.32
VMP1-207ENST00000588131 ITGBL1O95965 494 aaPredicted RBP13.07□□□□□ -0.32
VMP1-207ENST00000588131 BACE1P56817 501 aa13.07□□□□□ -0.32
VMP1-207ENST00000588131 RESTQ13127 1097 aa13.07□□□□□ -0.32
VMP1-207ENST00000588131 LDLRAD1Q5T700 205 aa13.07□□□□□ -0.32
VMP1-207ENST00000588131 BTNL9Q6UXG8 535 aa13.07□□□□□ -0.32
VMP1-207ENST00000588131 GPKOWQ92917 476 aaPredicted RBP eCLIP13.07□□□□□ -0.32
VMP1-207ENST00000588131 MTMR8Q96EF0 704 aa13.07□□□□□ -0.32
VMP1-207ENST00000588131 RRP36Q96EU6 259 aaKnown RBP13.07□□□□□ -0.32
VMP1-207ENST00000588131 GPBP1L1Q9HC44 474 aaPredicted RBP13.07□□□□□ -0.32
VMP1-207ENST00000588131 RBM27Q9P2N5 1060 aaKnown RBP13.07□□□□□ -0.32
VMP1-207ENST00000588131 KCNJ14Q9UNX9 436 aa13.07□□□□□ -0.32
VMP1-207ENST00000588131 BAZ2BQ9UIF8 2168 aaKnown RBP13.07□□□□□ -0.32
VMP1-207ENST00000588131 PTPRFP10586 1907 aa13.06□□□□□ -0.32
VMP1-207ENST00000588131 SPDYE5A6NIY4 337 aa13.06□□□□□ -0.32
VMP1-207ENST00000588131 KIF3CO14782 793 aa13.06□□□□□ -0.32
VMP1-207ENST00000588131 WDR46O15213 610 aaKnown RBP13.06□□□□□ -0.32
VMP1-207ENST00000588131 CELF2O95319 508 aaKnown RBP13.06□□□□□ -0.32
VMP1-207ENST00000588131 PDIA4P13667 645 aaKnown RBP13.06□□□□□ -0.32
VMP1-207ENST00000588131 USP14P54578 494 aa13.06□□□□□ -0.32
VMP1-207ENST00000588131 HMGCS2P54868 508 aa13.06□□□□□ -0.32
VMP1-207ENST00000588131 TRIM29Q14134 588 aa13.06□□□□□ -0.32
VMP1-207ENST00000588131 SYDE2Q5VT97 1194 aa13.06□□□□□ -0.32
VMP1-207ENST00000588131 WWC2Q6AWC2 1192 aa13.06□□□□□ -0.32
VMP1-207ENST00000588131 TYW1BQ6NUM6 668 aa13.06□□□□□ -0.32
VMP1-207ENST00000588131 LPAR1Q92633 364 aa13.06□□□□□ -0.32
VMP1-207ENST00000588131 OTUD5Q96G74 571 aa13.06□□□□□ -0.32
VMP1-207ENST00000588131 GBA2Q9HCG7 927 aaPredicted RBP13.06□□□□□ -0.32
VMP1-207ENST00000588131 FBXO28Q9NVF7 368 aa13.06□□□□□ -0.32
VMP1-207ENST00000588131 TRPM7Q96QT4 1865 aa13.06□□□□□ -0.32
VMP1-207ENST00000588131 LOC285556D6RIA3 1793 aa13.05□□□□□ -0.32
VMP1-207ENST00000588131 PARP14Q460N5 1801 aa13.05□□□□□ -0.32
VMP1-207ENST00000588131 KIF28PB7ZC32 967 aa13.05□□□□□ -0.32
VMP1-207ENST00000588131 C19orf81C9J6K1 198 aa13.05□□□□□ -0.32
VMP1-207ENST00000588131 STXBP3O00186 592 aa13.05□□□□□ -0.32
VMP1-207ENST00000588131 PPP1R11O60927 126 aaPredicted RBP13.05□□□□□ -0.32
VMP1-207ENST00000588131 MMP1P03956 469 aa13.05□□□□□ -0.32
VMP1-207ENST00000588131 VCAM1P19320 739 aa13.05□□□□□ -0.32
VMP1-207ENST00000588131 STAT2P52630 851 aa13.05□□□□□ -0.32
VMP1-207ENST00000588131 SNAP25P60880 206 aa13.05□□□□□ -0.32
VMP1-207ENST00000588131 KIF23Q02241 960 aaPredicted RBP13.05□□□□□ -0.32
VMP1-207ENST00000588131 PPATQ06203 517 aa13.05□□□□□ -0.32
VMP1-207ENST00000588131 IKQ13123 557 aaPredicted RBP13.05□□□□□ -0.32
VMP1-207ENST00000588131 FOXD4L6Q3SYB3 417 aaPredicted RBP13.05□□□□□ -0.32
VMP1-207ENST00000588131 SH3D19Q5HYK7 790 aa13.05□□□□□ -0.32
VMP1-207ENST00000588131 FOXD4L3Q6VB84 417 aaPredicted RBP13.05□□□□□ -0.32
VMP1-207ENST00000588131 HEATR3Q7Z4Q2 680 aa13.05□□□□□ -0.32
VMP1-207ENST00000588131 ERO1BQ86YB8 467 aa13.05□□□□□ -0.32
VMP1-207ENST00000588131 RGS22Q8NE09 1264 aa13.05□□□□□ -0.32
VMP1-207ENST00000588131 C12orf42Q96LP6 360 aa13.05□□□□□ -0.32
VMP1-207ENST00000588131 PHF20Q9BVI0 1012 aa13.05□□□□□ -0.32
VMP1-207ENST00000588131 RPAP3Q9H6T3 665 aaPredicted RBP13.05□□□□□ -0.32
VMP1-207ENST00000588131 SEC63Q9UGP8 760 aaKnown RBP13.05□□□□□ -0.32
VMP1-207ENST00000588131 PRR12Q9ULL5 1215 aa13.05□□□□□ -0.32
VMP1-207ENST00000588131 MYH15Q9Y2K3 1946 aa13.05□□□□□ -0.32
VMP1-207ENST00000588131 PNMA6FA0A0J9YX94 578 aa13.04□□□□□ -0.32
VMP1-207ENST00000588131 IRF6O14896 467 aa13.04□□□□□ -0.32
VMP1-207ENST00000588131 ZBTB5O15062 677 aa13.04□□□□□ -0.32
VMP1-207ENST00000588131 ADAMTS3O15072 1205 aa13.04□□□□□ -0.32
VMP1-207ENST00000588131 PLA2G6O60733 806 aa13.04□□□□□ -0.32
VMP1-207ENST00000588131 GJA5P36382 358 aa13.04□□□□□ -0.32
VMP1-207ENST00000588131 FKBP1BP68106 108 aa13.04□□□□□ -0.32
VMP1-207ENST00000588131 NPY5RQ15761 445 aa13.04□□□□□ -0.32
VMP1-207ENST00000588131 CDC37Q16543 378 aaPredicted RBP13.04□□□□□ -0.32
VMP1-207ENST00000588131 QRICH1Q2TAL8 776 aa13.04□□□□□ -0.32
VMP1-207ENST00000588131 CST9Q5W186 159 aa13.04□□□□□ -0.32
VMP1-207ENST00000588131 MCTP1Q6DN14 999 aa13.04□□□□□ -0.32
VMP1-207ENST00000588131 FAM173BQ6P4H8 233 aa13.04□□□□□ -0.32
VMP1-207ENST00000588131 FAM160B2Q86V87 743 aa13.04□□□□□ -0.32
VMP1-207ENST00000588131 KIFC2Q96AC6 838 aa13.04□□□□□ -0.32
VMP1-207ENST00000588131 COA7Q96BR5 231 aa13.04□□□□□ -0.32
VMP1-207ENST00000588131 OPTNQ96CV9 577 aa13.04□□□□□ -0.32
VMP1-207ENST00000588131 BARHL2Q9NY43 387 aa13.04□□□□□ -0.32
VMP1-207ENST00000588131 FEM1BQ9UK73 627 aa13.04□□□□□ -0.32
VMP1-207ENST00000588131 BAG4O95429 457 aaKnown RBP13.03□□□□□ -0.32
VMP1-207ENST00000588131 TAL1P17542 331 aaPredicted RBP13.03□□□□□ -0.32
VMP1-207ENST00000588131 XBP1P17861 261 aa13.03□□□□□ -0.32
VMP1-207ENST00000588131 PPIL2Q13356 520 aa13.03□□□□□ -0.32
VMP1-207ENST00000588131 DIS3L2Q8IYB7 885 aaKnown RBP13.03□□□□□ -0.32
VMP1-207ENST00000588131 C2orf69Q8N8R5 385 aa13.03□□□□□ -0.32
VMP1-207ENST00000588131 RBM46Q8TBY0 533 aaKnown RBP13.03□□□□□ -0.32
VMP1-207ENST00000588131 OXER1Q8TDS5 423 aa13.03□□□□□ -0.32
VMP1-207ENST00000588131 CHURC1Q8WUH1 139 aa13.03□□□□□ -0.32
VMP1-207ENST00000588131 TANGO6Q9C0B7 1094 aa13.03□□□□□ -0.32
VMP1-207ENST00000588131 SH3GLB2Q9NR46 395 aa13.03□□□□□ -0.32
VMP1-207ENST00000588131 TMOD4Q9NZQ9 345 aa13.03□□□□□ -0.32
VMP1-207ENST00000588131 KCNH4Q9UQ05 1017 aa13.03□□□□□ -0.32
VMP1-207ENST00000588131 RLFQ13129 1914 aa13.02□□□□□ -0.32
VMP1-207ENST00000588131 A0A0G2JLL6 359 aaPredicted RBP13.02□□□□□ -0.33
VMP1-207ENST00000588131 UNCXA6NJT0 531 aa13.02□□□□□ -0.33
VMP1-207ENST00000588131 BTBD18B2RXH4 712 aa13.02□□□□□ -0.33
VMP1-207ENST00000588131 NAPAP54920 295 aa13.02□□□□□ -0.33
VMP1-207ENST00000588131 NLRP5P59047 1200 aa13.02□□□□□ -0.33
VMP1-207ENST00000588131 CLEC17AQ6ZS10 378 aa13.02□□□□□ -0.33
VMP1-207ENST00000588131 PRRT2Q7Z6L0 340 aaPredicted RBP13.02□□□□□ -0.33
VMP1-207ENST00000588131 SLC10A4Q96EP9 437 aa13.02□□□□□ -0.33
VMP1-207ENST00000588131 SLF1Q9BQI6 1058 aa13.02□□□□□ -0.33
VMP1-207ENST00000588131 RANBP17Q9H2T7 1088 aaKnown RBP13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms