RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 TRIM43BA6NCK2 446 aa14.18□□□□□ -0.14
LIG3-209ENST00000586435 MINDY4BA8MYZ0 360 aa14.18□□□□□ -0.14
LIG3-209ENST00000586435 ADAMTS4O75173 837 aa14.18□□□□□ -0.14
LIG3-209ENST00000586435 TAL1P17542 331 aaPredicted RBP14.18□□□□□ -0.14
LIG3-209ENST00000586435 TLE2Q04725 743 aa14.18□□□□□ -0.14
LIG3-209ENST00000586435 SHHQ15465 462 aa14.18□□□□□ -0.14
LIG3-209ENST00000586435 LRRFIP1Q32MZ4 808 aaKnown RBP14.18□□□□□ -0.14
LIG3-209ENST00000586435 ZNF697Q5TEC3 545 aa14.18□□□□□ -0.14
LIG3-209ENST00000586435 SNRNP48Q6IEG0 339 aaKnown RBP14.18□□□□□ -0.14
LIG3-209ENST00000586435 ZNF467Q7Z7K2 595 aaPredicted RBP14.18□□□□□ -0.14
LIG3-209ENST00000586435 BADQ92934 168 aa14.18□□□□□ -0.14
LIG3-209ENST00000586435 MKL1Q969V6 931 aa14.18□□□□□ -0.14
LIG3-209ENST00000586435 TRIM43Q96BQ3 446 aaPredicted RBP14.18□□□□□ -0.14
LIG3-209ENST00000586435 NUP88Q99567 741 aaPredicted RBP14.18□□□□□ -0.14
LIG3-209ENST00000586435 TSEN34Q9BSV6 310 aaKnown RBP14.18□□□□□ -0.14
LIG3-209ENST00000586435 TACC3Q9Y6A5 838 aa14.18□□□□□ -0.14
LIG3-209ENST00000586435 A0A1W2PQ45 241 aaPredicted RBP14.17□□□□□ -0.14
LIG3-209ENST00000586435 A0A1W2PQY0 241 aa14.17□□□□□ -0.14
LIG3-209ENST00000586435 PGK1P00558 417 aa14.17□□□□□ -0.14
LIG3-209ENST00000586435 CLTBP09497 229 aa14.17□□□□□ -0.14
LIG3-209ENST00000586435 TDO2P48775 406 aa14.17□□□□□ -0.14
LIG3-209ENST00000586435 OAZ1P54368 228 aa14.17□□□□□ -0.14
LIG3-209ENST00000586435 SMAD3P84022 425 aaKnown RBP14.17□□□□□ -0.14
LIG3-209ENST00000586435 C9orf50Q5SZB4 431 aa14.17□□□□□ -0.14
LIG3-209ENST00000586435 SH3RF1Q7Z6J0 888 aa14.17□□□□□ -0.14
LIG3-209ENST00000586435 GMCL1P1Q8NEA9 526 aa14.17□□□□□ -0.14
LIG3-209ENST00000586435 SLC38A10Q9HBR0 1119 aa14.17□□□□□ -0.14
LIG3-209ENST00000586435 RIPK3Q9Y572 518 aa14.17□□□□□ -0.14
LIG3-209ENST00000586435 LAMA2P24043 3122 aaKnown RBP14.17□□□□□ -0.14
LIG3-209ENST00000586435 TTC41PQ6P2S7 1318 aa14.16□□□□□ -0.14
LIG3-209ENST00000586435 SYNRGQ9UMZ2 1314 aa14.16□□□□□ -0.14
LIG3-209ENST00000586435 MOXD2PA6NHM9 499 aa14.16□□□□□ -0.14
LIG3-209ENST00000586435 M0R2C6 588 aa14.16□□□□□ -0.14
LIG3-209ENST00000586435 KIAA0355O15063 1070 aa14.16□□□□□ -0.14
LIG3-209ENST00000586435 SNAI1O95863 264 aaPredicted RBP14.16□□□□□ -0.14
LIG3-209ENST00000586435 TTLL1O95922 423 aa14.16□□□□□ -0.14
LIG3-209ENST00000586435 CST5P28325 142 aaPredicted RBP14.16□□□□□ -0.14
LIG3-209ENST00000586435 ANKRD33Q7Z3H0 272 aa14.16□□□□□ -0.14
LIG3-209ENST00000586435 ZNF444Q8N0Y2 327 aaPredicted RBP14.16□□□□□ -0.14
LIG3-209ENST00000586435 KLHDC9Q8NEP7 349 aa14.16□□□□□ -0.14
LIG3-209ENST00000586435 DDX11Q96FC9 970 aa14.16□□□□□ -0.14
LIG3-209ENST00000586435 CEP95Q96GE4 821 aa14.16□□□□□ -0.14
LIG3-209ENST00000586435 TOX2Q96NM4 488 aa14.16□□□□□ -0.14
LIG3-209ENST00000586435 MTMR4Q9NYA4 1195 aa14.16□□□□□ -0.14
LIG3-209ENST00000586435 CLIP2Q9UDT6 1046 aa14.16□□□□□ -0.14
LIG3-209ENST00000586435 FBXO40Q9UH90 709 aa14.16□□□□□ -0.14
LIG3-209ENST00000586435 FEM1BQ9UK73 627 aa14.16□□□□□ -0.14
LIG3-209ENST00000586435 FAM184BQ9ULE4 1060 aa14.16□□□□□ -0.14
LIG3-209ENST00000586435 PATL2C9JE40 543 aaKnown RBP14.15□□□□□ -0.14
LIG3-209ENST00000586435 ZBED4O75132 1171 aa14.15□□□□□ -0.14
LIG3-209ENST00000586435 DUSP11O75319 330 aaKnown RBP14.15□□□□□ -0.14
LIG3-209ENST00000586435 FDX1P10109 184 aa14.15□□□□□ -0.14
LIG3-209ENST00000586435 ITGB8P26012 769 aa14.15□□□□□ -0.14
LIG3-209ENST00000586435 TSHZ3Q63HK5 1081 aa14.15□□□□□ -0.14
LIG3-209ENST00000586435 CCSAPQ6IQ19 270 aaPredicted RBP14.15□□□□□ -0.14
LIG3-209ENST00000586435 IFNL3Q8IZI9 196 aa14.15□□□□□ -0.14
LIG3-209ENST00000586435 STK11IPQ8N1F8 1099 aa14.15□□□□□ -0.14
LIG3-209ENST00000586435 CHST13Q8NET6 341 aa14.15□□□□□ -0.14
LIG3-209ENST00000586435 NEDD1Q8NHV4 660 aa14.15□□□□□ -0.14
LIG3-209ENST00000586435 NUP133Q8WUM0 1156 aa14.15□□□□□ -0.14
LIG3-209ENST00000586435 LENG1Q96BZ8 264 aaPredicted RBP14.15□□□□□ -0.14
LIG3-209ENST00000586435 A0A0C4DFX4 3053 aa14.15□□□□□ -0.14
LIG3-209ENST00000586435 LRRC37A2A6NM11 1700 aa14.15□□□□□ -0.14
LIG3-209ENST00000586435 TMEM265A0A087WTH1 108 aa14.14□□□□□ -0.15
LIG3-209ENST00000586435 ERC2O15083 957 aa14.14□□□□□ -0.15
LIG3-209ENST00000586435 PRDM1O75626 825 aa14.14□□□□□ -0.15
LIG3-209ENST00000586435 ACLYP53396 1101 aa14.14□□□□□ -0.15
LIG3-209ENST00000586435 PDE4BQ07343 736 aa14.14□□□□□ -0.15
LIG3-209ENST00000586435 CPXCR1Q8N123 301 aa14.14□□□□□ -0.15
LIG3-209ENST00000586435 PI4K2BQ8TCG2 481 aa14.14□□□□□ -0.15
LIG3-209ENST00000586435 KIFC2Q96AC6 838 aa14.14□□□□□ -0.15
LIG3-209ENST00000586435 FGD4Q96M96 766 aa14.14□□□□□ -0.15
LIG3-209ENST00000586435 NACAP1Q9BZK3 213 aa14.14□□□□□ -0.15
LIG3-209ENST00000586435 ABHD16BQ9H3Z7 469 aa14.14□□□□□ -0.15
LIG3-209ENST00000586435 STARD7Q9NQZ5 370 aa14.14□□□□□ -0.15
LIG3-209ENST00000586435 CTDP1Q9Y5B0 961 aaPredicted RBP14.14□□□□□ -0.15
LIG3-209ENST00000586435 PQBP1O60828 265 aaKnown RBP14.13□□□□□ -0.15
LIG3-209ENST00000586435 APPP05067 770 aa14.13□□□□□ -0.15
LIG3-209ENST00000586435 BMP3P12645 472 aa14.13□□□□□ -0.15
LIG3-209ENST00000586435 RAG1P15918 1043 aa14.13□□□□□ -0.15
LIG3-209ENST00000586435 ACVR2BQ13705 512 aa14.13□□□□□ -0.15
LIG3-209ENST00000586435 PPP4R3BQ5MIZ7 849 aa14.13□□□□□ -0.15
LIG3-209ENST00000586435 PHF6Q8IWS0 365 aaKnown RBP eCLIP14.13□□□□□ -0.15
LIG3-209ENST00000586435 LRRC47Q8N1G4 583 aaKnown RBP14.13□□□□□ -0.15
LIG3-209ENST00000586435 FAM161BQ96MY7 647 aa14.13□□□□□ -0.15
LIG3-209ENST00000586435 UPF3AQ9H1J1 476 aaKnown RBP14.13□□□□□ -0.15
LIG3-209ENST00000586435 RAVER2Q9HCJ3 691 aaKnown RBP14.13□□□□□ -0.15
LIG3-209ENST00000586435 CDKN2AIPQ9NXV6 580 aaPredicted RBP14.13□□□□□ -0.15
LIG3-209ENST00000586435 ZHX1Q9UKY1 873 aaPredicted RBP14.13□□□□□ -0.15
LIG3-209ENST00000586435 UNC80Q8N2C7 3258 aa14.13□□□□□ -0.15
LIG3-209ENST00000586435 ELP1O95163 1332 aa14.13□□□□□ -0.15
LIG3-209ENST00000586435 MROH7Q68CQ1 1323 aa14.13□□□□□ -0.15
LIG3-209ENST00000586435 LCTP09848 1927 aa14.12□□□□□ -0.15
LIG3-209ENST00000586435 DCDC2CA8MYV0 355 aa14.12□□□□□ -0.15
LIG3-209ENST00000586435 SLC3A2P08195 630 aaKnown RBP14.12□□□□□ -0.15
LIG3-209ENST00000586435 TSPY3P0CV98 308 aa14.12□□□□□ -0.15
LIG3-209ENST00000586435 TSPY8P0CW00 308 aa14.12□□□□□ -0.15
LIG3-209ENST00000586435 STAT2P52630 851 aa14.12□□□□□ -0.15
LIG3-209ENST00000586435 GJA9P57773 515 aa14.12□□□□□ -0.15
LIG3-209ENST00000586435 NKX3-2P78367 333 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms