RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 CBFA2T2O43439 604 aa10.04□□□□□ -0.8
SS18-214ENST00000580003 FKTNO75072 461 aa10.04□□□□□ -0.8
SS18-214ENST00000580003 ITGB5P18084 799 aa10.04□□□□□ -0.8
SS18-214ENST00000580003 ENDOUP21128 410 aaKnown RBP10.04□□□□□ -0.8
SS18-214ENST00000580003 BMP8BP34820 402 aa10.04□□□□□ -0.8
SS18-214ENST00000580003 DUSP4Q13115 394 aa10.04□□□□□ -0.8
SS18-214ENST00000580003 WAPLQ7Z5K2 1190 aa10.04□□□□□ -0.8
SS18-214ENST00000580003 KLHL25Q9H0H3 589 aa10.04□□□□□ -0.8
SS18-214ENST00000580003 ZMYM5Q9UJ78 669 aa10.04□□□□□ -0.8
SS18-214ENST00000580003 SF3B6Q9Y3B4 125 aaKnown RBP10.04□□□□□ -0.8
SS18-214ENST00000580003 PPM1BO75688 479 aa10.03□□□□□ -0.8
SS18-214ENST00000580003 EPHX1P07099 455 aa10.03□□□□□ -0.8
SS18-214ENST00000580003 ZGLP1P0C6A0 271 aa10.03□□□□□ -0.8
SS18-214ENST00000580003 NAT2P11245 290 aa10.03□□□□□ -0.8
SS18-214ENST00000580003 CTSKP43235 329 aa10.03□□□□□ -0.8
SS18-214ENST00000580003 FXNQ16595 210 aa10.03□□□□□ -0.8
SS18-214ENST00000580003 CRTC3Q6UUV7 619 aa10.03□□□□□ -0.8
SS18-214ENST00000580003 FIBCD1Q8N539 461 aa10.03□□□□□ -0.8
SS18-214ENST00000580003 FGD4Q96M96 766 aa10.03□□□□□ -0.8
SS18-214ENST00000580003 NOL6Q9H6R4 1146 aaKnown RBP10.03□□□□□ -0.8
SS18-214ENST00000580003 C19orf73Q9NVV2 129 aa10.03□□□□□ -0.8
SS18-214ENST00000580003 STK10O94804 968 aaKnown RBP10.02□□□□□ -0.81
SS18-214ENST00000580003 ATP2B1P20020 1258 aa10.02□□□□□ -0.81
SS18-214ENST00000580003 OXR1Q8N573 874 aa10.02□□□□□ -0.81
SS18-214ENST00000580003 ASIC4Q96FT7 647 aa10.02□□□□□ -0.81
SS18-214ENST00000580003 DIS3Q9Y2L1 958 aaKnown RBP10.02□□□□□ -0.81
SS18-214ENST00000580003 SUGT1Q9Y2Z0 365 aa10.02□□□□□ -0.81
SS18-214ENST00000580003 ANKRD34BA5PLL1 514 aa10.01□□□□□ -0.81
SS18-214ENST00000580003 H0Y8X5 98 aa10.01□□□□□ -0.81
SS18-214ENST00000580003 DDAH1O94760 285 aa10.01□□□□□ -0.81
SS18-214ENST00000580003 PAPLNO95428 1278 aa10.01□□□□□ -0.81
SS18-214ENST00000580003 VAV1P15498 845 aa10.01□□□□□ -0.81
SS18-214ENST00000580003 C6orf15Q6UXA7 325 aaPredicted RBP10.01□□□□□ -0.81
SS18-214ENST00000580003 ANKS3Q6ZW76 656 aa10.01□□□□□ -0.81
SS18-214ENST00000580003 PDZD8Q8NEN9 1154 aa10.01□□□□□ -0.81
SS18-214ENST00000580003 ADCY4Q8NFM4 1077 aa10.01□□□□□ -0.81
SS18-214ENST00000580003 PPP1R1BQ9UD71 204 aaPredicted RBP10.01□□□□□ -0.81
SS18-214ENST00000580003 ZNF205O95201 554 aa10□□□□□ -0.81
SS18-214ENST00000580003 NOP2P46087 812 aaKnown RBP10□□□□□ -0.81
SS18-214ENST00000580003 PPP2R5DQ14738 602 aa10□□□□□ -0.81
SS18-214ENST00000580003 SPPL2CQ8IUH8 684 aa10□□□□□ -0.81
SS18-214ENST00000580003 FAM178BQ8IXR5 827 aa10□□□□□ -0.81
SS18-214ENST00000580003 HNRNPLLQ8WVV9 542 aaKnown RBP10□□□□□ -0.81
SS18-214ENST00000580003 KIRREL1Q96J84 757 aa10□□□□□ -0.81
SS18-214ENST00000580003 ZDHHC15Q96MV8 337 aa10□□□□□ -0.81
SS18-214ENST00000580003 APBA2Q99767 749 aa10□□□□□ -0.81
SS18-214ENST00000580003 CDADC1Q9BWV3 514 aa10□□□□□ -0.81
SS18-214ENST00000580003 ZNF143P52747 638 aaPredicted RBP9.99□□□□□ -0.81
SS18-214ENST00000580003 POU4F1Q01851 419 aa9.99□□□□□ -0.81
SS18-214ENST00000580003 CHRNEQ04844 493 aa9.99□□□□□ -0.81
SS18-214ENST00000580003 ANKS4BQ8N8V4 417 aa9.99□□□□□ -0.81
SS18-214ENST00000580003 MYLIPQ8WY64 445 aa9.99□□□□□ -0.81
SS18-214ENST00000580003 FAM168AQ92567 244 aa9.99□□□□□ -0.81
SS18-214ENST00000580003 ZNF281Q9Y2X9 895 aa9.99□□□□□ -0.81
SS18-214ENST00000580003 TMEM82A0PJX8 343 aa9.98□□□□□ -0.81
SS18-214ENST00000580003 FITM1A5D6W6 292 aa9.98□□□□□ -0.81
SS18-214ENST00000580003 HPXP02790 462 aa9.98□□□□□ -0.81
SS18-214ENST00000580003 ERVFC1P60507 584 aa9.98□□□□□ -0.81
SS18-214ENST00000580003 KCNMB1Q16558 191 aa9.98□□□□□ -0.81
SS18-214ENST00000580003 ZPBP2Q6X784 338 aa9.98□□□□□ -0.81
SS18-214ENST00000580003 ZSWIM9Q86XI8 627 aa9.98□□□□□ -0.81
SS18-214ENST00000580003 ABHD4Q8TB40 342 aa9.98□□□□□ -0.81
SS18-214ENST00000580003 SUSD2Q9UGT4 822 aa9.98□□□□□ -0.81
SS18-214ENST00000580003 PAX4O43316 350 aa9.97□□□□□ -0.81
SS18-214ENST00000580003 GSTM1P09488 218 aa9.97□□□□□ -0.81
SS18-214ENST00000580003 TMEM67Q5HYA8 995 aa9.97□□□□□ -0.81
SS18-214ENST00000580003 CKAP2LQ8IYA6 745 aa9.97□□□□□ -0.81
SS18-214ENST00000580003 LINC01599Q8WXQ3 324 aa9.97□□□□□ -0.81
SS18-214ENST00000580003 MAP6Q96JE9 813 aa9.97□□□□□ -0.81
SS18-214ENST00000580003 FCRL2Q96LA5 508 aaPredicted RBP9.97□□□□□ -0.81
SS18-214ENST00000580003 B2RBV5 119 aa9.96□□□□□ -0.82
SS18-214ENST00000580003 CD3EP07766 207 aa9.96□□□□□ -0.82
SS18-214ENST00000580003 FYB2Q5VWT5 728 aa9.96□□□□□ -0.82
SS18-214ENST00000580003 PPP1R14AQ96A00 147 aa9.96□□□□□ -0.82
SS18-214ENST00000580003 RCC1LQ96I51 464 aaKnown RBP9.96□□□□□ -0.82
SS18-214ENST00000580003 G6PC3Q9BUM1 346 aa9.96□□□□□ -0.82
SS18-214ENST00000580003 SLC12A9Q9BXP2 914 aa9.96□□□□□ -0.82
SS18-214ENST00000580003 TRIM55Q9BYV6 548 aa9.96□□□□□ -0.82
SS18-214ENST00000580003 AP5S1Q9NUS5 200 aa9.96□□□□□ -0.82
SS18-214ENST00000580003 CGGBP1Q9UFW8 167 aaPredicted RBP9.96□□□□□ -0.82
SS18-214ENST00000580003 NOP56O00567 594 aaKnown RBP9.95□□□□□ -0.82
SS18-214ENST00000580003 GTF2F1P35269 517 aaKnown RBP eCLIP9.95□□□□□ -0.82
SS18-214ENST00000580003 KIR2DL1P43626 348 aaPredicted RBP9.95□□□□□ -0.82
SS18-214ENST00000580003 KIR2DL2P43627 348 aaPredicted RBP9.95□□□□□ -0.82
SS18-214ENST00000580003 SF3A1Q15459 793 aaKnown RBP9.95□□□□□ -0.82
SS18-214ENST00000580003 SLC14A2Q15849 920 aa9.95□□□□□ -0.82
SS18-214ENST00000580003 LILRA2Q8N149 483 aa9.95□□□□□ -0.82
SS18-214ENST00000580003 ARHGEF39Q8N4T4 335 aa9.95□□□□□ -0.82
SS18-214ENST00000580003 CRACR2BQ8N4Y2 399 aaPredicted RBP9.95□□□□□ -0.82
SS18-214ENST00000580003 NAT16Q8N8M0 369 aa9.95□□□□□ -0.82
SS18-214ENST00000580003 ST7Q9NRC1 585 aa9.95□□□□□ -0.82
SS18-214ENST00000580003 TNFRSF10DQ9UBN6 386 aa9.95□□□□□ -0.82
SS18-214ENST00000580003 AKT3Q9Y243 479 aa9.95□□□□□ -0.82
SS18-214ENST00000580003 KLF4O43474 513 aa9.94□□□□□ -0.82
SS18-214ENST00000580003 TRHRP34981 398 aaPredicted RBP9.94□□□□□ -0.82
SS18-214ENST00000580003 AMPD2Q01433 879 aa9.94□□□□□ -0.82
SS18-214ENST00000580003 NR0B2Q15466 257 aa9.94□□□□□ -0.82
SS18-214ENST00000580003 POMZP3Q6PJE2 187 aa9.94□□□□□ -0.82
SS18-214ENST00000580003 MICAL1Q8TDZ2 1067 aa9.94□□□□□ -0.82
SS18-214ENST00000580003 APEX2Q9UBZ4 518 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms