RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 NCAPHQ15003 741 aa8.39□□□□□ -1.07
NUP88-213ENST00000576862 NOL9Q5SY16 702 aaKnown RBP8.39□□□□□ -1.07
NUP88-213ENST00000576862 MRM1Q6IN84 353 aaKnown RBP8.39□□□□□ -1.07
NUP88-213ENST00000576862 FIBCD1Q8N539 461 aa8.39□□□□□ -1.07
NUP88-213ENST00000576862 FGD4Q96M96 766 aa8.39□□□□□ -1.07
NUP88-213ENST00000576862 G6PC3Q9BUM1 346 aa8.39□□□□□ -1.07
NUP88-213ENST00000576862 DSCC1Q9BVC3 393 aa8.39□□□□□ -1.07
NUP88-213ENST00000576862 WHRNQ9P202 907 aa8.39□□□□□ -1.07
NUP88-213ENST00000576862 PAPLNO95428 1278 aa8.38□□□□□ -1.07
NUP88-213ENST00000576862 GSNP06396 782 aa8.38□□□□□ -1.07
NUP88-213ENST00000576862 VAV1P15498 845 aa8.38□□□□□ -1.07
NUP88-213ENST00000576862 TAL1P17542 331 aaPredicted RBP8.38□□□□□ -1.07
NUP88-213ENST00000576862 GDNFP39905 211 aa8.38□□□□□ -1.07
NUP88-213ENST00000576862 FXNQ16595 210 aa8.38□□□□□ -1.07
NUP88-213ENST00000576862 ZPBP2Q6X784 338 aa8.38□□□□□ -1.07
NUP88-213ENST00000576862 ATG4DQ86TL0 474 aaPredicted RBP8.38□□□□□ -1.07
NUP88-213ENST00000576862 FLAD1Q8NFF5 587 aa8.38□□□□□ -1.07
NUP88-213ENST00000576862 ADCY4Q8NFM4 1077 aa8.38□□□□□ -1.07
NUP88-213ENST00000576862 NOL6Q9H6R4 1146 aaKnown RBP8.38□□□□□ -1.07
NUP88-213ENST00000576862 APEX2Q9UBZ4 518 aa8.38□□□□□ -1.07
NUP88-213ENST00000576862 ANKRD34BA5PLL1 514 aa8.37□□□□□ -1.07
NUP88-213ENST00000576862 FKTNO75072 461 aa8.37□□□□□ -1.07
NUP88-213ENST00000576862 ZNF205O95201 554 aa8.37□□□□□ -1.07
NUP88-213ENST00000576862 GJB6O95452 261 aa8.37□□□□□ -1.07
NUP88-213ENST00000576862 GBP3Q9H0R5 595 aa8.37□□□□□ -1.07
NUP88-213ENST00000576862 SP110Q9HB58 689 aa8.37□□□□□ -1.07
NUP88-213ENST00000576862 DDAH1O94760 285 aa8.36□□□□□ -1.07
NUP88-213ENST00000576862 STK10O94804 968 aaKnown RBP8.36□□□□□ -1.07
NUP88-213ENST00000576862 RPL10P27635 214 aaKnown RBP8.36□□□□□ -1.07
NUP88-213ENST00000576862 HK2P52789 917 aa8.36□□□□□ -1.07
NUP88-213ENST00000576862 ERVFC1P60507 584 aa8.36□□□□□ -1.07
NUP88-213ENST00000576862 RTP2Q5QGT7 225 aa8.36□□□□□ -1.07
NUP88-213ENST00000576862 MCTP1Q6DN14 999 aa8.36□□□□□ -1.07
NUP88-213ENST00000576862 WAPLQ7Z5K2 1190 aa8.36□□□□□ -1.07
NUP88-213ENST00000576862 ADAT2Q7Z6V5 191 aaKnown RBP8.36□□□□□ -1.07
NUP88-213ENST00000576862 LINC01599Q8WXQ3 324 aa8.36□□□□□ -1.07
NUP88-213ENST00000576862 DHX38Q92620 1227 aaKnown RBP8.36□□□□□ -1.07
NUP88-213ENST00000576862 SLC12A9Q9BXP2 914 aa8.36□□□□□ -1.07
NUP88-213ENST00000576862 DIS3Q9Y2L1 958 aaKnown RBP8.36□□□□□ -1.07
NUP88-213ENST00000576862 SSU72P8A0A1W2PR75 194 aa8.35□□□□□ -1.07
NUP88-213ENST00000576862 PPM1BO75688 479 aa8.35□□□□□ -1.07
NUP88-213ENST00000576862 GTF2F1P35269 517 aaKnown RBP eCLIP8.35□□□□□ -1.07
NUP88-213ENST00000576862 RAB33AQ14088 237 aa8.35□□□□□ -1.07
NUP88-213ENST00000576862 PPP2R5DQ14738 602 aa8.35□□□□□ -1.07
NUP88-213ENST00000576862 DDR2Q16832 855 aa8.35□□□□□ -1.07
NUP88-213ENST00000576862 FYB2Q5VWT5 728 aa8.35□□□□□ -1.07
NUP88-213ENST00000576862 ARHGEF39Q8N4T4 335 aa8.35□□□□□ -1.07
NUP88-213ENST00000576862 CCDC120Q96HB5 630 aa8.35□□□□□ -1.07
NUP88-213ENST00000576862 RCC1LQ96I51 464 aaKnown RBP8.35□□□□□ -1.07
NUP88-213ENST00000576862 ZDHHC15Q96MV8 337 aa8.35□□□□□ -1.07
NUP88-213ENST00000576862 ST7Q9NRC1 585 aa8.35□□□□□ -1.07
NUP88-213ENST00000576862 CGGBP1Q9UFW8 167 aaPredicted RBP8.35□□□□□ -1.07
NUP88-213ENST00000576862 R3HCC1Q9Y3T6 440 aaKnown RBP8.35□□□□□ -1.07
NUP88-213ENST00000576862 HPXP02790 462 aa8.34□□□□□ -1.07
NUP88-213ENST00000576862 CEBPAP49715 358 aaPredicted RBP8.34□□□□□ -1.07
NUP88-213ENST00000576862 ZNF143P52747 638 aaPredicted RBP8.34□□□□□ -1.07
NUP88-213ENST00000576862 ARMC5Q96C12 935 aa8.34□□□□□ -1.07
NUP88-213ENST00000576862 APBA2Q99767 749 aa8.34□□□□□ -1.07
NUP88-213ENST00000576862 MCMBPQ9BTE3 642 aa8.34□□□□□ -1.07
NUP88-213ENST00000576862 AP5S1Q9NUS5 200 aa8.34□□□□□ -1.07
NUP88-213ENST00000576862 SF3B6Q9Y3B4 125 aaKnown RBP8.34□□□□□ -1.07
NUP88-213ENST00000576862 SUSD5O60279 629 aa8.33□□□□□ -1.08
NUP88-213ENST00000576862 RBL2Q08999 1139 aa8.33□□□□□ -1.08
NUP88-213ENST00000576862 CWF19L1Q69YN2 538 aaKnown RBP8.33□□□□□ -1.08
NUP88-213ENST00000576862 CARMIL2Q6F5E8 1435 aa8.33□□□□□ -1.08
NUP88-213ENST00000576862 CKAP2LQ8IYA6 745 aa8.33□□□□□ -1.08
NUP88-213ENST00000576862 PDZD8Q8NEN9 1154 aa8.33□□□□□ -1.08
NUP88-213ENST00000576862 MAP6Q96JE9 813 aa8.33□□□□□ -1.08
NUP88-213ENST00000576862 FCRL3Q96P31 734 aaPredicted RBP8.33□□□□□ -1.08
NUP88-213ENST00000576862 LGR4Q9BXB1 951 aa8.33□□□□□ -1.08
NUP88-213ENST00000576862 ERVK13-1Q9NX77 482 aa8.33□□□□□ -1.08
NUP88-213ENST00000576862 NOTOA8MTQ0 251 aa8.32□□□□□ -1.08
NUP88-213ENST00000576862 VAMP4O75379 141 aa8.32□□□□□ -1.08
NUP88-213ENST00000576862 JUNBP17275 347 aaPredicted RBP8.32□□□□□ -1.08
NUP88-213ENST00000576862 SF3A1Q15459 793 aaKnown RBP8.32□□□□□ -1.08
NUP88-213ENST00000576862 SREK1Q8WXA9 508 aaKnown RBP8.32□□□□□ -1.08
NUP88-213ENST00000576862 SUGT1Q9Y2Z0 365 aa8.32□□□□□ -1.08
NUP88-213ENST00000576862 EMC9Q9Y3B6 208 aa8.32□□□□□ -1.08
NUP88-213ENST00000576862 BIN1O00499 593 aa8.31□□□□□ -1.08
NUP88-213ENST00000576862 GSTM1P09488 218 aa8.31□□□□□ -1.08
NUP88-213ENST00000576862 IFNGR1P15260 489 aa8.31□□□□□ -1.08
NUP88-213ENST00000576862 TRHRP34981 398 aaPredicted RBP8.31□□□□□ -1.08
NUP88-213ENST00000576862 AFMP43652 599 aa8.31□□□□□ -1.08
NUP88-213ENST00000576862 DUSP4Q13115 394 aa8.31□□□□□ -1.08
NUP88-213ENST00000576862 TIGD5Q53EQ6 642 aa8.31□□□□□ -1.08
NUP88-213ENST00000576862 TMEM52Q8NDY8 209 aa8.31□□□□□ -1.08
NUP88-213ENST00000576862 SYTL4Q96C24 671 aaPredicted RBP8.31□□□□□ -1.08
NUP88-213ENST00000576862 HHIPL1Q96JK4 782 aa8.31□□□□□ -1.08
NUP88-213ENST00000576862 FCRL2Q96LA5 508 aaPredicted RBP8.31□□□□□ -1.08
NUP88-213ENST00000576862 CDADC1Q9BWV3 514 aa8.31□□□□□ -1.08
NUP88-213ENST00000576862 C19orf44Q9H6X5 657 aa8.31□□□□□ -1.08
NUP88-213ENST00000576862 ZMYM5Q9UJ78 669 aa8.31□□□□□ -1.08
NUP88-213ENST00000576862 AKT3Q9Y243 479 aa8.31□□□□□ -1.08
NUP88-213ENST00000576862 USP2O75604 605 aaPredicted RBP8.3□□□□□ -1.08
NUP88-213ENST00000576862 EFEMP2O95967 443 aa8.3□□□□□ -1.08
NUP88-213ENST00000576862 CD3EP07766 207 aa8.3□□□□□ -1.08
NUP88-213ENST00000576862 NAT2P11245 290 aa8.3□□□□□ -1.08
NUP88-213ENST00000576862 POU4F1Q01851 419 aa8.3□□□□□ -1.08
NUP88-213ENST00000576862 GRB10Q13322 594 aa8.3□□□□□ -1.08
NUP88-213ENST00000576862 NR0B2Q15466 257 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms