RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 ADAT2Q7Z6V5 191 aaKnown RBP7.38□□□□□ -1.23
NUP88-208ENST00000574087 RCC1LQ96I51 464 aaKnown RBP7.38□□□□□ -1.23
NUP88-208ENST00000574087 DSCC1Q9BVC3 393 aa7.38□□□□□ -1.23
NUP88-208ENST00000574087 NOL6Q9H6R4 1146 aaKnown RBP7.38□□□□□ -1.23
NUP88-208ENST00000574087 APEX2Q9UBZ4 518 aa7.38□□□□□ -1.23
NUP88-208ENST00000574087 ADAMTS6Q9UKP5 1117 aa7.38□□□□□ -1.23
NUP88-208ENST00000574087 ZNF281Q9Y2X9 895 aa7.38□□□□□ -1.23
NUP88-208ENST00000574087 U2SURPO15042 1029 aaKnown RBP7.37□□□□□ -1.23
NUP88-208ENST00000574087 GSNP06396 782 aa7.37□□□□□ -1.23
NUP88-208ENST00000574087 NAT2P11245 290 aa7.37□□□□□ -1.23
NUP88-208ENST00000574087 LTKP29376 864 aa7.37□□□□□ -1.23
NUP88-208ENST00000574087 BMP8BP34820 402 aa7.37□□□□□ -1.23
NUP88-208ENST00000574087 TEKQ02763 1124 aa7.37□□□□□ -1.23
NUP88-208ENST00000574087 RNF111Q6ZNA4 994 aa7.37□□□□□ -1.23
NUP88-208ENST00000574087 EEPD1Q7L9B9 569 aa7.37□□□□□ -1.23
NUP88-208ENST00000574087 ABI1Q8IZP0 508 aa7.37□□□□□ -1.23
NUP88-208ENST00000574087 ARHGEF39Q8N4T4 335 aa7.37□□□□□ -1.23
NUP88-208ENST00000574087 ADCY4Q8NFM4 1077 aa7.37□□□□□ -1.23
NUP88-208ENST00000574087 PI4K2BQ8TCG2 481 aa7.37□□□□□ -1.23
NUP88-208ENST00000574087 PRDM7Q9NQW5 492 aa7.37□□□□□ -1.23
NUP88-208ENST00000574087 OAS3Q9Y6K5 1087 aaKnown RBP7.37□□□□□ -1.23
NUP88-208ENST00000574087 H0Y8X5 98 aa7.36□□□□□ -1.23
NUP88-208ENST00000574087 ZNF205O95201 554 aa7.36□□□□□ -1.23
NUP88-208ENST00000574087 RNASE1P07998 156 aaKnown RBP7.36□□□□□ -1.23
NUP88-208ENST00000574087 PCBP3P57721 371 aaKnown RBP7.36□□□□□ -1.23
NUP88-208ENST00000574087 PLCL1Q15111 1095 aa7.36□□□□□ -1.23
NUP88-208ENST00000574087 CRTC3Q6UUV7 619 aa7.36□□□□□ -1.23
NUP88-208ENST00000574087 PMFBP1Q8TBY8 1022 aa7.36□□□□□ -1.23
NUP88-208ENST00000574087 FOXP3Q9BZS1 431 aa7.36□□□□□ -1.23
NUP88-208ENST00000574087 CCDC113Q9H0I3 377 aa7.36□□□□□ -1.23
NUP88-208ENST00000574087 MBNL3Q9NUK0 354 aaKnown RBP7.36□□□□□ -1.23
NUP88-208ENST00000574087 CGGBP1Q9UFW8 167 aaPredicted RBP7.36□□□□□ -1.23
NUP88-208ENST00000574087 TCFL5Q9UL49 500 aa7.36□□□□□ -1.23
NUP88-208ENST00000574087 SF3B6Q9Y3B4 125 aaKnown RBP7.36□□□□□ -1.23
NUP88-208ENST00000574087 SYPP08247 313 aa7.35□□□□□ -1.23
NUP88-208ENST00000574087 VAV1P15498 845 aa7.35□□□□□ -1.23
NUP88-208ENST00000574087 PPP2R5DQ14738 602 aa7.35□□□□□ -1.23
NUP88-208ENST00000574087 ZNF792Q3KQV3 632 aa7.35□□□□□ -1.23
NUP88-208ENST00000574087 NBPF11Q86T75 865 aa7.35□□□□□ -1.23
NUP88-208ENST00000574087 BVESQ8NE79 360 aa7.35□□□□□ -1.23
NUP88-208ENST00000574087 MKL1Q969V6 931 aa7.35□□□□□ -1.23
NUP88-208ENST00000574087 ALPK1Q96QP1 1244 aa7.35□□□□□ -1.23
NUP88-208ENST00000574087 EPN3Q9H201 632 aa7.35□□□□□ -1.23
NUP88-208ENST00000574087 SUGT1Q9Y2Z0 365 aa7.35□□□□□ -1.23
NUP88-208ENST00000574087 EMC9Q9Y3B6 208 aa7.35□□□□□ -1.23
NUP88-208ENST00000574087 TMEM82A0PJX8 343 aa7.34□□□□□ -1.23
NUP88-208ENST00000574087 SLC10A6Q3KNW5 377 aa7.34□□□□□ -1.23
NUP88-208ENST00000574087 RALGPS1Q5JS13 557 aa7.34□□□□□ -1.23
NUP88-208ENST00000574087 CWF19L1Q69YN2 538 aaKnown RBP7.34□□□□□ -1.23
NUP88-208ENST00000574087 CBLL1Q75N03 491 aa7.34□□□□□ -1.23
NUP88-208ENST00000574087 LRP10Q7Z4F1 713 aa7.34□□□□□ -1.23
NUP88-208ENST00000574087 ST13P5Q8NFI4 369 aaPredicted RBP7.34□□□□□ -1.23
NUP88-208ENST00000574087 MRGPRX3Q96LB0 322 aa7.34□□□□□ -1.23
NUP88-208ENST00000574087 ZDHHC15Q96MV8 337 aa7.34□□□□□ -1.23
NUP88-208ENST00000574087 SLC12A9Q9BXP2 914 aa7.34□□□□□ -1.23
NUP88-208ENST00000574087 ADAMTS10Q9H324 1103 aa7.34□□□□□ -1.23
NUP88-208ENST00000574087 AKT3Q9Y243 479 aa7.34□□□□□ -1.23
NUP88-208ENST00000574087 DNAJC25-GNG10A0A024R161 153 aa7.33□□□□□ -1.24
NUP88-208ENST00000574087 SSU72P8A0A1W2PR75 194 aa7.33□□□□□ -1.24
NUP88-208ENST00000574087 PDPK1O15530 556 aa7.33□□□□□ -1.24
NUP88-208ENST00000574087 POU4F1Q01851 419 aa7.33□□□□□ -1.24
NUP88-208ENST00000574087 GRB10Q13322 594 aa7.33□□□□□ -1.24
NUP88-208ENST00000574087 RASGRF1Q13972 1273 aa7.33□□□□□ -1.24
NUP88-208ENST00000574087 RASA3Q14644 834 aa7.33□□□□□ -1.24
NUP88-208ENST00000574087 SV2CQ496J9 727 aa7.33□□□□□ -1.24
NUP88-208ENST00000574087 RTP2Q5QGT7 225 aa7.33□□□□□ -1.24
NUP88-208ENST00000574087 LNPKQ9C0E8 428 aa7.33□□□□□ -1.24
NUP88-208ENST00000574087 C19orf73Q9NVV2 129 aa7.33□□□□□ -1.24
NUP88-208ENST00000574087 SLAMF8Q9P0V8 285 aa7.33□□□□□ -1.24
NUP88-208ENST00000574087 ADGRE2Q9UHX3 823 aa7.33□□□□□ -1.24
NUP88-208ENST00000574087 TMEM59LQ9UK28 342 aa7.33□□□□□ -1.24
NUP88-208ENST00000574087 VAMP4O75379 141 aa7.32□□□□□ -1.24
NUP88-208ENST00000574087 CAPNS1P04632 268 aa7.32□□□□□ -1.24
NUP88-208ENST00000574087 ZGLP1P0C6A0 271 aa7.32□□□□□ -1.24
NUP88-208ENST00000574087 NOP2P46087 812 aaKnown RBP7.32□□□□□ -1.24
NUP88-208ENST00000574087 ZNF227Q86WZ6 799 aa7.32□□□□□ -1.24
NUP88-208ENST00000574087 TRIM59Q8IWR1 403 aa7.32□□□□□ -1.24
NUP88-208ENST00000574087 LRRN4CLQ8ND94 238 aa7.32□□□□□ -1.24
NUP88-208ENST00000574087 LINC01599Q8WXQ3 324 aa7.32□□□□□ -1.24
NUP88-208ENST00000574087 ZNF669Q96BR6 464 aaPredicted RBP7.32□□□□□ -1.24
NUP88-208ENST00000574087 FCRL3Q96P31 734 aaPredicted RBP7.32□□□□□ -1.24
NUP88-208ENST00000574087 MCMBPQ9BTE3 642 aa7.32□□□□□ -1.24
NUP88-208ENST00000574087 G6PC3Q9BUM1 346 aa7.32□□□□□ -1.24
NUP88-208ENST00000574087 LGR4Q9BXB1 951 aa7.32□□□□□ -1.24
NUP88-208ENST00000574087 OSBPL2Q9H1P3 480 aa7.32□□□□□ -1.24
NUP88-208ENST00000574087 EBF1Q9UH73 591 aa7.32□□□□□ -1.24
NUP88-208ENST00000574087 FAM221BA6H8Z2 402 aa7.31□□□□□ -1.24
NUP88-208ENST00000574087 NOP56O00567 594 aaKnown RBP7.31□□□□□ -1.24
NUP88-208ENST00000574087 FKTNO75072 461 aa7.31□□□□□ -1.24
NUP88-208ENST00000574087 ITGAVP06756 1048 aa7.31□□□□□ -1.24
NUP88-208ENST00000574087 RPL10P27635 214 aaKnown RBP7.31□□□□□ -1.24
NUP88-208ENST00000574087 POMZP3Q6PJE2 187 aa7.31□□□□□ -1.24
NUP88-208ENST00000574087 ZPBP2Q6X784 338 aa7.31□□□□□ -1.24
NUP88-208ENST00000574087 WAPLQ7Z5K2 1190 aa7.31□□□□□ -1.24
NUP88-208ENST00000574087 CRACR2BQ8N4Y2 399 aaPredicted RBP7.31□□□□□ -1.24
NUP88-208ENST00000574087 CCDC120Q96HB5 630 aa7.31□□□□□ -1.24
NUP88-208ENST00000574087 AP5S1Q9NUS5 200 aa7.31□□□□□ -1.24
NUP88-208ENST00000574087 SNTG2Q9NY99 539 aa7.31□□□□□ -1.24
NUP88-208ENST00000574087 USP35Q9P2H5 1018 aa7.31□□□□□ -1.24
NUP88-208ENST00000574087 CCDC85CA6NKD9 419 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms