RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 NR0B2Q15466 257 aa5.28□□□□□ -1.56
VPS35-203ENST00000562420 PPP2R5EQ16537 467 aa5.28□□□□□ -1.56
VPS35-203ENST00000562420 FXNQ16595 210 aa5.28□□□□□ -1.56
VPS35-203ENST00000562420 DCAF15Q66K64 600 aa5.28□□□□□ -1.56
VPS35-203ENST00000562420 VHLLQ6RSH7 139 aa5.28□□□□□ -1.56
VPS35-203ENST00000562420 NPM2Q86SE8 214 aaKnown RBP5.28□□□□□ -1.56
VPS35-203ENST00000562420 USHBP1Q8N6Y0 703 aa5.28□□□□□ -1.56
VPS35-203ENST00000562420 SYTL4Q96C24 671 aaPredicted RBP5.28□□□□□ -1.56
VPS35-203ENST00000562420 RCC1LQ96I51 464 aaKnown RBP5.28□□□□□ -1.56
VPS35-203ENST00000562420 C19orf73Q9NVV2 129 aa5.28□□□□□ -1.56
VPS35-203ENST00000562420 GFOD1Q9NXC2 390 aa5.28□□□□□ -1.56
VPS35-203ENST00000562420 DIS3Q9Y2L1 958 aaKnown RBP5.28□□□□□ -1.56
VPS35-203ENST00000562420 ANKRD34BA5PLL1 514 aa5.27□□□□□ -1.57
VPS35-203ENST00000562420 FAM86C2PA6NEL3 165 aa5.27□□□□□ -1.57
VPS35-203ENST00000562420 WASH4PA8MWX3 477 aa5.27□□□□□ -1.57
VPS35-203ENST00000562420 KLF4O43474 513 aa5.27□□□□□ -1.57
VPS35-203ENST00000562420 HPXP02790 462 aa5.27□□□□□ -1.57
VPS35-203ENST00000562420 ZGLP1P0C6A0 271 aa5.27□□□□□ -1.57
VPS35-203ENST00000562420 CTSKP43235 329 aa5.27□□□□□ -1.57
VPS35-203ENST00000562420 ZNF445P59923 1031 aa5.27□□□□□ -1.57
VPS35-203ENST00000562420 CHRNEQ04844 493 aa5.27□□□□□ -1.57
VPS35-203ENST00000562420 GRB10Q13322 594 aa5.27□□□□□ -1.57
VPS35-203ENST00000562420 HEATR6Q6AI08 1181 aaKnown RBP5.27□□□□□ -1.57
VPS35-203ENST00000562420 OGFOD2Q6N063 350 aa5.27□□□□□ -1.57
VPS35-203ENST00000562420 ANKS4BQ8N8V4 417 aa5.27□□□□□ -1.57
VPS35-203ENST00000562420 PDZD8Q8NEN9 1154 aa5.27□□□□□ -1.57
VPS35-203ENST00000562420 LINC01599Q8WXQ3 324 aa5.27□□□□□ -1.57
VPS35-203ENST00000562420 DSCC1Q9BVC3 393 aa5.27□□□□□ -1.57
VPS35-203ENST00000562420 EPN3Q9H201 632 aa5.27□□□□□ -1.57
VPS35-203ENST00000562420 SLAMF8Q9P0V8 285 aa5.27□□□□□ -1.57
VPS35-203ENST00000562420 TCFL5Q9UL49 500 aa5.27□□□□□ -1.57
VPS35-203ENST00000562420 SF3B6Q9Y3B4 125 aaKnown RBP5.27□□□□□ -1.57
VPS35-203ENST00000562420 ZNF451Q9Y4E5 1061 aa5.27□□□□□ -1.57
VPS35-203ENST00000562420 MRVI1Q9Y6F6 885 aa5.27□□□□□ -1.57
VPS35-203ENST00000562420 PPM1BO75688 479 aa5.26□□□□□ -1.57
VPS35-203ENST00000562420 PAPLNO95428 1278 aa5.26□□□□□ -1.57
VPS35-203ENST00000562420 TP53P04637 393 aaPredicted RBP5.26□□□□□ -1.57
VPS35-203ENST00000562420 RAC2P15153 192 aa5.26□□□□□ -1.57
VPS35-203ENST00000562420 KIR2DL1P43626 348 aaPredicted RBP5.26□□□□□ -1.57
VPS35-203ENST00000562420 KIR2DL2P43627 348 aaPredicted RBP5.26□□□□□ -1.57
VPS35-203ENST00000562420 AFMP43652 599 aa5.26□□□□□ -1.57
VPS35-203ENST00000562420 JAG1P78504 1218 aa5.26□□□□□ -1.57
VPS35-203ENST00000562420 NOL9Q5SY16 702 aaKnown RBP5.26□□□□□ -1.57
VPS35-203ENST00000562420 KIAA1211LQ6NV74 962 aa5.26□□□□□ -1.57
VPS35-203ENST00000562420 LILRA2Q8N149 483 aa5.26□□□□□ -1.57
VPS35-203ENST00000562420 CRACR2BQ8N4Y2 399 aaPredicted RBP5.26□□□□□ -1.57
VPS35-203ENST00000562420 OXR1Q8N573 874 aa5.26□□□□□ -1.57
VPS35-203ENST00000562420 FCRL2Q96LA5 508 aaPredicted RBP5.26□□□□□ -1.57
VPS35-203ENST00000562420 G6PC3Q9BUM1 346 aa5.26□□□□□ -1.57
VPS35-203ENST00000562420 TANGO6Q9C0B7 1094 aa5.26□□□□□ -1.57
VPS35-203ENST00000562420 SUSD2Q9UGT4 822 aa5.26□□□□□ -1.57
VPS35-203ENST00000562420 DNAJC25-GNG10A0A024R161 153 aa5.25□□□□□ -1.57
VPS35-203ENST00000562420 TMEM82A0PJX8 343 aa5.25□□□□□ -1.57
VPS35-203ENST00000562420 FITM1A5D6W6 292 aa5.25□□□□□ -1.57
VPS35-203ENST00000562420 RBAK-RBAKDNI3L0D1 243 aa5.25□□□□□ -1.57
VPS35-203ENST00000562420 STK10O94804 968 aaKnown RBP5.25□□□□□ -1.57
VPS35-203ENST00000562420 EPHX1P07099 455 aa5.25□□□□□ -1.57
VPS35-203ENST00000562420 SYPP08247 313 aa5.25□□□□□ -1.57
VPS35-203ENST00000562420 ATP2B1P20020 1258 aa5.25□□□□□ -1.57
VPS35-203ENST00000562420 POU4F1Q01851 419 aa5.25□□□□□ -1.57
VPS35-203ENST00000562420 RAB33AQ14088 237 aa5.25□□□□□ -1.57
VPS35-203ENST00000562420 RALGPS1Q5JS13 557 aa5.25□□□□□ -1.57
VPS35-203ENST00000562420 CWF19L1Q69YN2 538 aaKnown RBP5.25□□□□□ -1.57
VPS35-203ENST00000562420 POMZP3Q6PJE2 187 aa5.25□□□□□ -1.57
VPS35-203ENST00000562420 SPPL2CQ8IUH8 684 aa5.25□□□□□ -1.57
VPS35-203ENST00000562420 FAM178BQ8IXR5 827 aa5.25□□□□□ -1.57
VPS35-203ENST00000562420 CKAP2LQ8IYA6 745 aa5.25□□□□□ -1.57
VPS35-203ENST00000562420 ARHGEF39Q8N4T4 335 aa5.25□□□□□ -1.57
VPS35-203ENST00000562420 FIBCD1Q8N539 461 aa5.25□□□□□ -1.57
VPS35-203ENST00000562420 ZNF513Q8N8E2 541 aaPredicted RBP5.25□□□□□ -1.57
VPS35-203ENST00000562420 ASIC4Q96FT7 647 aa5.25□□□□□ -1.57
VPS35-203ENST00000562420 HIRIP3Q9BW71 556 aaPredicted RBP5.25□□□□□ -1.57
VPS35-203ENST00000562420 FOXP3Q9BZS1 431 aa5.25□□□□□ -1.57
VPS35-203ENST00000562420 PRDM7Q9NQW5 492 aa5.25□□□□□ -1.57
VPS35-203ENST00000562420 PCDHB10Q9UN67 800 aa5.25□□□□□ -1.57
VPS35-203ENST00000562420 R3HCC1Q9Y3T6 440 aaKnown RBP5.25□□□□□ -1.57
VPS35-203ENST00000562420 SSU72P8A0A1W2PR75 194 aa5.24□□□□□ -1.57
VPS35-203ENST00000562420 VAV1P15498 845 aa5.24□□□□□ -1.57
VPS35-203ENST00000562420 NOP2P46087 812 aaKnown RBP5.24□□□□□ -1.57
VPS35-203ENST00000562420 SNX17Q15036 470 aa5.24□□□□□ -1.57
VPS35-203ENST00000562420 DDR2Q16832 855 aa5.24□□□□□ -1.57
VPS35-203ENST00000562420 CRTC3Q6UUV7 619 aa5.24□□□□□ -1.57
VPS35-203ENST00000562420 C6orf15Q6UXA7 325 aaPredicted RBP5.24□□□□□ -1.57
VPS35-203ENST00000562420 ANKS3Q6ZW76 656 aa5.24□□□□□ -1.57
VPS35-203ENST00000562420 SREK1Q8WXA9 508 aaKnown RBP5.24□□□□□ -1.57
VPS35-203ENST00000562420 ZNF669Q96BR6 464 aaPredicted RBP5.24□□□□□ -1.57
VPS35-203ENST00000562420 MAP6Q96JE9 813 aa5.24□□□□□ -1.57
VPS35-203ENST00000562420 SP110Q9HB58 689 aa5.24□□□□□ -1.57
VPS35-203ENST00000562420 TNFRSF10DQ9UBN6 386 aa5.24□□□□□ -1.57
VPS35-203ENST00000562420 CGGBP1Q9UFW8 167 aaPredicted RBP5.24□□□□□ -1.57
VPS35-203ENST00000562420 H0Y8X5 98 aa5.23□□□□□ -1.57
VPS35-203ENST00000562420 C8AP07357 584 aa5.23□□□□□ -1.57
VPS35-203ENST00000562420 RBL2Q08999 1139 aa5.23□□□□□ -1.57
VPS35-203ENST00000562420 RTP2Q5QGT7 225 aa5.23□□□□□ -1.57
VPS35-203ENST00000562420 SOGA3Q5TF21 947 aa5.23□□□□□ -1.57
VPS35-203ENST00000562420 LARP1BQ659C4 914 aaKnown RBP5.23□□□□□ -1.57
VPS35-203ENST00000562420 RCSD1Q6JBY9 416 aa5.23□□□□□ -1.57
VPS35-203ENST00000562420 CYP2R1Q6VVX0 501 aa5.23□□□□□ -1.57
VPS35-203ENST00000562420 EEPD1Q7L9B9 569 aa5.23□□□□□ -1.57
VPS35-203ENST00000562420 ZSWIM9Q86XI8 627 aa5.23□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms