RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 RTP1P59025 263 aa8.18□□□□□ -1.1
VPS13C-208ENST00000559119 TCERG1LQ5VWI1 586 aa8.18□□□□□ -1.1
VPS13C-208ENST00000559119 ZPBP2Q6X784 338 aa8.18□□□□□ -1.1
VPS13C-208ENST00000559119 NKD1Q969G9 470 aa8.18□□□□□ -1.1
VPS13C-208ENST00000559119 TNFRSF10DQ9UBN6 386 aa8.18□□□□□ -1.1
VPS13C-208ENST00000559119 FBXL21Q9UKT6 434 aa8.18□□□□□ -1.1
VPS13C-208ENST00000559119 HRKO00198 91 aa8.17□□□□□ -1.1
VPS13C-208ENST00000559119 MEIS1O00470 390 aa8.17□□□□□ -1.1
VPS13C-208ENST00000559119 EFEMP2O95967 443 aa8.17□□□□□ -1.1
VPS13C-208ENST00000559119 NME1P15531 152 aaKnown RBP8.17□□□□□ -1.1
VPS13C-208ENST00000559119 PNLIPP16233 465 aa8.17□□□□□ -1.1
VPS13C-208ENST00000559119 ENDOUP21128 410 aaKnown RBP8.17□□□□□ -1.1
VPS13C-208ENST00000559119 CTSWP56202 376 aa8.17□□□□□ -1.1
VPS13C-208ENST00000559119 FCRL2Q96LA5 508 aaPredicted RBP8.17□□□□□ -1.1
VPS13C-208ENST00000559119 MINPP1Q9UNW1 487 aa8.17□□□□□ -1.1
VPS13C-208ENST00000559119 PCDHB12Q9Y5F1 795 aa8.17□□□□□ -1.1
VPS13C-208ENST00000559119 B8ZZF3 427 aa8.16□□□□□ -1.1
VPS13C-208ENST00000559119 BMP7P18075 431 aa8.16□□□□□ -1.1
VPS13C-208ENST00000559119 MRPL58Q14197 206 aaKnown RBP8.16□□□□□ -1.1
VPS13C-208ENST00000559119 OLFML2BQ68BL8 750 aa8.16□□□□□ -1.1
VPS13C-208ENST00000559119 GALNT18Q6P9A2 607 aa8.16□□□□□ -1.1
VPS13C-208ENST00000559119 TMEM151BQ8IW70 566 aa8.16□□□□□ -1.1
VPS13C-208ENST00000559119 SLC6A18Q96N87 628 aa8.16□□□□□ -1.1
VPS13C-208ENST00000559119 ZCCHC4Q9H5U6 513 aa8.16□□□□□ -1.1
VPS13C-208ENST00000559119 ANTXR1Q9H6X2 564 aa8.16□□□□□ -1.1
VPS13C-208ENST00000559119 GFOD1Q9NXC2 390 aa8.16□□□□□ -1.1
VPS13C-208ENST00000559119 MBD1Q9UIS9 605 aaPredicted RBP8.16□□□□□ -1.1
VPS13C-208ENST00000559119 TAF6LQ9Y6J9 622 aa8.16□□□□□ -1.1
VPS13C-208ENST00000559119 TMEM192Q8IY95 271 aa8.15□□□□□ -1.1
VPS13C-208ENST00000559119 SIGLEC10Q96LC7 697 aa8.15□□□□□ -1.1
VPS13C-208ENST00000559119 PLCD4Q9BRC7 762 aa8.15□□□□□ -1.1
VPS13C-208ENST00000559119 CDADC1Q9BWV3 514 aa8.15□□□□□ -1.1
VPS13C-208ENST00000559119 NT5C1AQ9BXI3 368 aa8.15□□□□□ -1.1
VPS13C-208ENST00000559119 IRAK3Q9Y616 596 aa8.15□□□□□ -1.1
VPS13C-208ENST00000559119 NCANO14594 1321 aa8.14□□□□□ -1.11
VPS13C-208ENST00000559119 WTIPA6NIX2 430 aaPredicted RBP8.14□□□□□ -1.11
VPS13C-208ENST00000559119 FADS2P1A8MWK0 482 aa8.14□□□□□ -1.11
VPS13C-208ENST00000559119 ABLIM1O14639 778 aa8.14□□□□□ -1.11
VPS13C-208ENST00000559119 PRRG2O14669 202 aa8.14□□□□□ -1.11
VPS13C-208ENST00000559119 TNFRSF10CO14798 259 aa8.14□□□□□ -1.11
VPS13C-208ENST00000559119 HOXA5P20719 270 aa8.14□□□□□ -1.11
VPS13C-208ENST00000559119 SDHBP21912 280 aa8.14□□□□□ -1.11
VPS13C-208ENST00000559119 ARL4AP40617 200 aa8.14□□□□□ -1.11
VPS13C-208ENST00000559119 SSPNQ14714 243 aa8.14□□□□□ -1.11
VPS13C-208ENST00000559119 PARD6AQ9NPB6 346 aa8.14□□□□□ -1.11
VPS13C-208ENST00000559119 GPR55Q9Y2T6 319 aaPredicted RBP8.14□□□□□ -1.11
VPS13C-208ENST00000559119 MEIS3P2A8K0S8 358 aa8.13□□□□□ -1.11
VPS13C-208ENST00000559119 MPOP05164 745 aa8.13□□□□□ -1.11
VPS13C-208ENST00000559119 PI3P19957 117 aa8.13□□□□□ -1.11
VPS13C-208ENST00000559119 VIPR1P32241 457 aa8.13□□□□□ -1.11
VPS13C-208ENST00000559119 AUHQ13825 339 aaKnown RBP8.13□□□□□ -1.11
VPS13C-208ENST00000559119 HSF5Q4G112 596 aaPredicted RBP8.13□□□□□ -1.11
VPS13C-208ENST00000559119 KIAA0825Q8IV33 1275 aa8.13□□□□□ -1.11
VPS13C-208ENST00000559119 SLITRK4Q8IW52 837 aa8.13□□□□□ -1.11
VPS13C-208ENST00000559119 DHRS1Q96LJ7 313 aa8.13□□□□□ -1.11
VPS13C-208ENST00000559119 SPON2Q9BUD6 331 aa8.13□□□□□ -1.11
VPS13C-208ENST00000559119 BMP8BP34820 402 aa8.12□□□□□ -1.11
VPS13C-208ENST00000559119 ERVFRD-1P60508 538 aa8.12□□□□□ -1.11
VPS13C-208ENST00000559119 YBX1P67809 324 aaKnown RBP8.12□□□□□ -1.11
VPS13C-208ENST00000559119 LAPTM5Q13571 262 aa8.12□□□□□ -1.11
VPS13C-208ENST00000559119 TMEM87AQ8NBN3 555 aa8.12□□□□□ -1.11
VPS13C-208ENST00000559119 SLC9A7Q96T83 725 aa8.12□□□□□ -1.11
VPS13C-208ENST00000559119 ERVK13-1Q9NX77 482 aa8.12□□□□□ -1.11
VPS13C-208ENST00000559119 N4BP3O15049 544 aa8.11□□□□□ -1.11
VPS13C-208ENST00000559119 ZNF205O95201 554 aa8.11□□□□□ -1.11
VPS13C-208ENST00000559119 VAV1P15498 845 aa8.11□□□□□ -1.11
VPS13C-208ENST00000559119 EPHB3P54753 998 aa8.11□□□□□ -1.11
VPS13C-208ENST00000559119 EAF1Q96JC9 268 aaPredicted RBP8.11□□□□□ -1.11
VPS13C-208ENST00000559119 DSCC1Q9BVC3 393 aa8.11□□□□□ -1.11
VPS13C-208ENST00000559119 CNTD2Q9H8S5 307 aa8.11□□□□□ -1.11
VPS13C-208ENST00000559119 PRR13Q9NZ81 148 aa8.11□□□□□ -1.11
VPS13C-208ENST00000559119 A0A1W2PQ45 241 aaPredicted RBP8.1□□□□□ -1.11
VPS13C-208ENST00000559119 A0A1W2PQY0 241 aa8.1□□□□□ -1.11
VPS13C-208ENST00000559119 FAM86C2PA6NEL3 165 aa8.1□□□□□ -1.11
VPS13C-208ENST00000559119 PRKCAP17252 672 aa8.1□□□□□ -1.11
VPS13C-208ENST00000559119 CTSKP43235 329 aa8.1□□□□□ -1.11
VPS13C-208ENST00000559119 CYP4F8P98187 520 aa8.1□□□□□ -1.11
VPS13C-208ENST00000559119 TMEM62Q0P6H9 643 aa8.1□□□□□ -1.11
VPS13C-208ENST00000559119 KIR3DS1Q14943 382 aa8.1□□□□□ -1.11
VPS13C-208ENST00000559119 CRTC3Q6UUV7 619 aa8.1□□□□□ -1.11
VPS13C-208ENST00000559119 CCDC144CPQ8IYA2 1237 aa8.1□□□□□ -1.11
VPS13C-208ENST00000559119 AP5S1Q9NUS5 200 aa8.1□□□□□ -1.11
VPS13C-208ENST00000559119 SUCOQ9UBS9 1254 aaKnown RBP8.1□□□□□ -1.11
VPS13C-208ENST00000559119 GSNP06396 782 aa8.09□□□□□ -1.11
VPS13C-208ENST00000559119 RAB3GAP1Q15042 981 aa8.09□□□□□ -1.11
VPS13C-208ENST00000559119 INTS3Q68E01 1043 aaKnown RBP8.09□□□□□ -1.11
VPS13C-208ENST00000559119 SLCO6A1Q86UG4 719 aa8.09□□□□□ -1.11
VPS13C-208ENST00000559119 C7orf61Q8IZ16 206 aa8.09□□□□□ -1.11
VPS13C-208ENST00000559119 MARCH10Q8NA82 808 aaPredicted RBP8.09□□□□□ -1.11
VPS13C-208ENST00000559119 NUP43Q8NFH3 380 aa8.09□□□□□ -1.11
VPS13C-208ENST00000559119 PANK1Q8TE04 598 aa8.09□□□□□ -1.11
VPS13C-208ENST00000559119 C20orf173Q96LM9 149 aa8.09□□□□□ -1.11
VPS13C-208ENST00000559119 A0A1W2PQ27 194 aa8.08□□□□□ -1.12
VPS13C-208ENST00000559119 A0A1W2PQ64 194 aa8.08□□□□□ -1.12
VPS13C-208ENST00000559119 A0A1W2PQC6 194 aa8.08□□□□□ -1.12
VPS13C-208ENST00000559119 A0A1W2PQD8 194 aa8.08□□□□□ -1.12
VPS13C-208ENST00000559119 IMPDH2P12268 514 aa8.08□□□□□ -1.12
VPS13C-208ENST00000559119 AFF3P51826 1226 aaKnown RBP8.08□□□□□ -1.12
VPS13C-208ENST00000559119 CWF19L1Q69YN2 538 aaKnown RBP8.08□□□□□ -1.12
VPS13C-208ENST00000559119 TMC6Q7Z403 805 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms