RNA–Protein interactions for RNA: ENST00000558155.1

SPG11-208, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-208ENST00000558155 ZNF365Q70YC5 407 aa6.3□□□□□ -1.4
SPG11-208ENST00000558155 MSL3Q8N5Y2 521 aaKnown RBP6.3□□□□□ -1.4
SPG11-208ENST00000558155 MIGA1Q8NAN2 632 aa6.3□□□□□ -1.4
SPG11-208ENST00000558155 PCSK9Q8NBP7 692 aaKnown RBP6.3□□□□□ -1.4
SPG11-208ENST00000558155 ARHGAP45Q92619 1136 aa6.3□□□□□ -1.4
SPG11-208ENST00000558155 RNF25Q96BH1 459 aaPredicted RBP6.3□□□□□ -1.4
SPG11-208ENST00000558155 GLT1D1Q96MS3 346 aa6.3□□□□□ -1.4
SPG11-208ENST00000558155 PBX4Q9BYU1 374 aa6.3□□□□□ -1.4
SPG11-208ENST00000558155 SH2D4AQ9H788 454 aa6.3□□□□□ -1.4
SPG11-208ENST00000558155 SLC28A3Q9HAS3 691 aa6.3□□□□□ -1.4
SPG11-208ENST00000558155 SPC25Q9HBM1 224 aa6.3□□□□□ -1.4
SPG11-208ENST00000558155 ARHGEF10LQ9HCE6 1279 aa6.3□□□□□ -1.4
SPG11-208ENST00000558155 FAM184BQ9ULE4 1060 aa6.3□□□□□ -1.4
SPG11-208ENST00000558155 CNPY2Q9Y2B0 182 aa6.3□□□□□ -1.4
SPG11-208ENST00000558155 FOCADQ5VW36 1801 aa6.29□□□□□ -1.4
SPG11-208ENST00000558155 IPO8O15397 1037 aaKnown RBP6.29□□□□□ -1.4
SPG11-208ENST00000558155 TLR3O15455 904 aaKnown RBP6.29□□□□□ -1.4
SPG11-208ENST00000558155 FGBP02675 491 aa6.29□□□□□ -1.4
SPG11-208ENST00000558155 ZNF865P0CJ78 1059 aaPredicted RBP6.29□□□□□ -1.4
SPG11-208ENST00000558155 BMP1P13497 986 aa6.29□□□□□ -1.4
SPG11-208ENST00000558155 GUCY1A2P33402 732 aa6.29□□□□□ -1.4
SPG11-208ENST00000558155 SHMT1P34896 483 aa6.29□□□□□ -1.4
SPG11-208ENST00000558155 COPB2P35606 906 aa6.29□□□□□ -1.4
SPG11-208ENST00000558155 STAT3P40763 770 aa6.29□□□□□ -1.4
SPG11-208ENST00000558155 CDK7P50613 346 aa6.29□□□□□ -1.4
SPG11-208ENST00000558155 ZNF792Q3KQV3 632 aa6.29□□□□□ -1.4
SPG11-208ENST00000558155 TNNI3KQ59H18 835 aa6.29□□□□□ -1.4
SPG11-208ENST00000558155 RASIP1Q5U651 963 aa6.29□□□□□ -1.4
SPG11-208ENST00000558155 TMEM179Q6ZVK1 233 aa6.29□□□□□ -1.4
SPG11-208ENST00000558155 C16orf59Q7L2K0 433 aa6.29□□□□□ -1.4
SPG11-208ENST00000558155 MAGEB6Q8N7X4 407 aa6.29□□□□□ -1.4
SPG11-208ENST00000558155 KLHDC9Q8NEP7 349 aa6.29□□□□□ -1.4
SPG11-208ENST00000558155 DBNDD2Q9BQY9 259 aa6.29□□□□□ -1.4
SPG11-208ENST00000558155 PIH1D3Q9NQM4 214 aaKnown RBP6.29□□□□□ -1.4
SPG11-208ENST00000558155 CXXC1Q9P0U4 656 aaPredicted RBP6.29□□□□□ -1.4
SPG11-208ENST00000558155 DAXXQ9UER7 740 aaPredicted RBP6.29□□□□□ -1.4
SPG11-208ENST00000558155 HCN4Q9Y3Q4 1203 aa6.29□□□□□ -1.4
SPG11-208ENST00000558155 FPGT-TNNI3KV9GXZ4 949 aa6.29□□□□□ -1.4
SPG11-208ENST00000558155 NCOR1O75376 2440 aa6.29□□□□□ -1.4
SPG11-208ENST00000558155 ZNF236Q9UL36 1845 aa6.28□□□□□ -1.4
SPG11-208ENST00000558155 PNMA6EA0A0J9YXQ4 647 aa6.28□□□□□ -1.4
SPG11-208ENST00000558155 A0A1W2PRG0 241 aa6.28□□□□□ -1.4
SPG11-208ENST00000558155 ARVCFO00192 962 aa6.28□□□□□ -1.4
SPG11-208ENST00000558155 APBB1O00213 710 aa6.28□□□□□ -1.4
SPG11-208ENST00000558155 ADAMTS4O75173 837 aa6.28□□□□□ -1.4
SPG11-208ENST00000558155 DUSP11O75319 330 aaKnown RBP6.28□□□□□ -1.4
SPG11-208ENST00000558155 PGK2P07205 417 aa6.28□□□□□ -1.4
SPG11-208ENST00000558155 ACRP10323 421 aa6.28□□□□□ -1.4
SPG11-208ENST00000558155 CSF2RAP15509 400 aa6.28□□□□□ -1.4
SPG11-208ENST00000558155 TAL1P17542 331 aaPredicted RBP6.28□□□□□ -1.4
SPG11-208ENST00000558155 GABPAQ06546 454 aa6.28□□□□□ -1.4
SPG11-208ENST00000558155 ADGRE1Q14246 886 aa6.28□□□□□ -1.4
SPG11-208ENST00000558155 TMEM132BQ14DG7 1078 aa6.28□□□□□ -1.4
SPG11-208ENST00000558155 RIOX2Q8IUF8 465 aa6.28□□□□□ -1.4
SPG11-208ENST00000558155 RPUSD2Q8IZ73 545 aaKnown RBP6.28□□□□□ -1.4
SPG11-208ENST00000558155 HERVK_113Q902F9 699 aa6.28□□□□□ -1.4
SPG11-208ENST00000558155 ATG4CQ96DT6 458 aa6.28□□□□□ -1.4
SPG11-208ENST00000558155 DDX11Q96FC9 970 aa6.28□□□□□ -1.4
SPG11-208ENST00000558155 CDCA7LQ96GN5 454 aa6.28□□□□□ -1.4
SPG11-208ENST00000558155 CCDC17Q96LX7 622 aa6.28□□□□□ -1.4
SPG11-208ENST00000558155 CRNKL1Q9BZJ0 848 aaKnown RBP6.28□□□□□ -1.4
SPG11-208ENST00000558155 NKX2-4Q9H2Z4 354 aa6.28□□□□□ -1.4
SPG11-208ENST00000558155 VCPKMTQ9H867 229 aa6.28□□□□□ -1.4
SPG11-208ENST00000558155 IL23AQ9NPF7 189 aa6.28□□□□□ -1.4
SPG11-208ENST00000558155 MCM9Q9NXL9 1143 aa6.28□□□□□ -1.4
SPG11-208ENST00000558155 SWAP70Q9UH65 585 aa6.28□□□□□ -1.4
SPG11-208ENST00000558155 TBX21Q9UL17 535 aa6.28□□□□□ -1.4
SPG11-208ENST00000558155 ADAMTS5Q9UNA0 930 aa6.28□□□□□ -1.4
SPG11-208ENST00000558155 TMX2Q9Y320 296 aa6.28□□□□□ -1.4
SPG11-208ENST00000558155 MYO5AQ9Y4I1 1855 aaKnown RBP6.28□□□□□ -1.4
SPG11-208ENST00000558155 SYNGAP1Q96PV0 1343 aa6.27□□□□□ -1.41
SPG11-208ENST00000558155 MAGEB6P1A0A0J9YX57 407 aa6.27□□□□□ -1.41
SPG11-208ENST00000558155 A0A0U1RQG5 324 aaPredicted RBP6.27□□□□□ -1.41
SPG11-208ENST00000558155 ZNF316A6NFI3 1004 aaPredicted RBP6.27□□□□□ -1.41
SPG11-208ENST00000558155 WDR46O15213 610 aaKnown RBP6.27□□□□□ -1.41
SPG11-208ENST00000558155 GTPBP6O43824 516 aaPredicted RBP6.27□□□□□ -1.41
SPG11-208ENST00000558155 SURF6O75683 361 aaKnown RBP6.27□□□□□ -1.41
SPG11-208ENST00000558155 ASGR1P07306 291 aa6.27□□□□□ -1.41
SPG11-208ENST00000558155 C6orf222P0C671 652 aaPredicted RBP6.27□□□□□ -1.41
SPG11-208ENST00000558155 CST5P28325 142 aaPredicted RBP6.27□□□□□ -1.41
SPG11-208ENST00000558155 LSM11P83369 360 aaKnown RBP eCLIP6.27□□□□□ -1.41
SPG11-208ENST00000558155 ATP8B2P98198 1209 aa6.27□□□□□ -1.41
SPG11-208ENST00000558155 SKIV2LQ15477 1246 aaKnown RBP6.27□□□□□ -1.41
SPG11-208ENST00000558155 GNASQ5JWF2 1037 aa6.27□□□□□ -1.41
SPG11-208ENST00000558155 TMEM31Q5JXX7 168 aa6.27□□□□□ -1.41
SPG11-208ENST00000558155 CCSAPQ6IQ19 270 aaPredicted RBP6.27□□□□□ -1.41
SPG11-208ENST00000558155 MAMDC4Q6UXC1 1216 aa6.27□□□□□ -1.41
SPG11-208ENST00000558155 TRMT2AQ8IZ69 625 aaKnown RBP6.27□□□□□ -1.41
SPG11-208ENST00000558155 SPICE1Q8N0Z3 855 aa6.27□□□□□ -1.41
SPG11-208ENST00000558155 LRFN3Q9BTN0 628 aa6.27□□□□□ -1.41
SPG11-208ENST00000558155 SEZ6LQ9BYH1 1024 aa6.27□□□□□ -1.41
SPG11-208ENST00000558155 CCDC8Q9H0W5 538 aaPredicted RBP6.27□□□□□ -1.41
SPG11-208ENST00000558155 ZHX1Q9UKY1 873 aaPredicted RBP6.27□□□□□ -1.41
SPG11-208ENST00000558155 SYNRGQ9UMZ2 1314 aa6.26□□□□□ -1.41
SPG11-208ENST00000558155 VWA5AO00534 786 aa6.26□□□□□ -1.41
SPG11-208ENST00000558155 ERC2O15083 957 aa6.26□□□□□ -1.41
SPG11-208ENST00000558155 ZEB2O60315 1214 aa6.26□□□□□ -1.41
SPG11-208ENST00000558155 GPR37L1O60883 481 aa6.26□□□□□ -1.41
SPG11-208ENST00000558155 SNAI1O95863 264 aaPredicted RBP6.26□□□□□ -1.41
SPG11-208ENST00000558155 CYP2C18P33260 490 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms