RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 EPHB4P54760 987 aa15.32■□□□□ 0.04
SHMT2-226ENST00000556825 SEPT2Q15019 361 aa15.32■□□□□ 0.04
SHMT2-226ENST00000556825 QPCTQ16769 361 aa15.32■□□□□ 0.04
SHMT2-226ENST00000556825 CMPK2Q5EBM0 449 aa15.32■□□□□ 0.04
SHMT2-226ENST00000556825 OLFML1Q6UWY5 402 aa15.32■□□□□ 0.04
SHMT2-226ENST00000556825 CAVIN3Q969G5 261 aa15.32■□□□□ 0.04
SHMT2-226ENST00000556825 SLC12A4Q9UP95 1085 aa15.32■□□□□ 0.04
SHMT2-226ENST00000556825 CEMIPQ8WUJ3 1361 aa15.32■□□□□ 0.04
SHMT2-226ENST00000556825 CCT8L1PA6NM43 557 aa15.32■□□□□ 0.04
SHMT2-226ENST00000556825 EIF4E1BA6NMX2 242 aaKnown RBP15.32■□□□□ 0.04
SHMT2-226ENST00000556825 ATP2A2P16615 1042 aaKnown RBP15.32■□□□□ 0.04
SHMT2-226ENST00000556825 ZFXP17010 805 aaPredicted RBP15.32■□□□□ 0.04
SHMT2-226ENST00000556825 KCNA4P22459 653 aa15.32■□□□□ 0.04
SHMT2-226ENST00000556825 BPIFB4P59827 614 aa15.32■□□□□ 0.04
SHMT2-226ENST00000556825 PHEXP78562 749 aa15.32■□□□□ 0.04
SHMT2-226ENST00000556825 ADCY1Q08828 1119 aa15.32■□□□□ 0.04
SHMT2-226ENST00000556825 ARFGAP2Q8N6H7 521 aa15.32■□□□□ 0.04
SHMT2-226ENST00000556825 POLD4Q9HCU8 107 aa15.32■□□□□ 0.04
SHMT2-226ENST00000556825 CABP2Q9NPB3 220 aa15.32■□□□□ 0.04
SHMT2-226ENST00000556825 LRRC42Q9Y546 428 aa15.32■□□□□ 0.04
SHMT2-226ENST00000556825 A2ML1A8K2U0 1454 aa15.32■□□□□ 0.04
SHMT2-226ENST00000556825 ZKSCAN1P17029 563 aaPredicted RBP15.31■□□□□ 0.04
SHMT2-226ENST00000556825 SP100P23497 879 aaPredicted RBP15.31■□□□□ 0.04
SHMT2-226ENST00000556825 PSMA5P28066 241 aa15.31■□□□□ 0.04
SHMT2-226ENST00000556825 GET4Q7L5D6 327 aaPredicted RBP15.31■□□□□ 0.04
SHMT2-226ENST00000556825 CD302Q8IX05 232 aa15.31■□□□□ 0.04
SHMT2-226ENST00000556825 C19orf44Q9H6X5 657 aa15.31■□□□□ 0.04
SHMT2-226ENST00000556825 MBIPQ9NS73 344 aa15.31■□□□□ 0.04
SHMT2-226ENST00000556825 ABCC6O95255 1503 aa15.31■□□□□ 0.04
SHMT2-226ENST00000556825 COL3A1P02461 1466 aaPredicted RBP15.31■□□□□ 0.04
SHMT2-226ENST00000556825 HMGB1P1B2RPK0 211 aaPredicted RBP15.31■□□□□ 0.04
SHMT2-226ENST00000556825 FLOT1O75955 427 aa15.31■□□□□ 0.04
SHMT2-226ENST00000556825 TRIM37O94972 964 aa15.31■□□□□ 0.04
SHMT2-226ENST00000556825 ITGB3BPQ13352 177 aaPredicted RBP15.31■□□□□ 0.04
SHMT2-226ENST00000556825 GKAP1Q5VSY0 366 aaPredicted RBP15.31■□□□□ 0.04
SHMT2-226ENST00000556825 SYNE3Q6ZMZ3 975 aa15.31■□□□□ 0.04
SHMT2-226ENST00000556825 TBC1D1Q86TI0 1168 aaPredicted RBP15.31■□□□□ 0.04
SHMT2-226ENST00000556825 C8orf58Q8NAV2 365 aa15.31■□□□□ 0.04
SHMT2-226ENST00000556825 SMC1BQ8NDV3 1235 aa15.31■□□□□ 0.04
SHMT2-226ENST00000556825 RBM33Q96EV2 1170 aaKnown RBP15.31■□□□□ 0.04
SHMT2-226ENST00000556825 IFT43Q96FT9 208 aa15.31■□□□□ 0.04
SHMT2-226ENST00000556825 TRAIPQ9BWF2 469 aa15.31■□□□□ 0.04
SHMT2-226ENST00000556825 CIDEBQ9UHD4 219 aa15.31■□□□□ 0.04
SHMT2-226ENST00000556825 CEP131Q9UPN4 1083 aa15.31■□□□□ 0.04
SHMT2-226ENST00000556825 SAR1BQ9Y6B6 198 aa15.31■□□□□ 0.04
SHMT2-226ENST00000556825 ALKQ9UM73 1620 aa15.3■□□□□ 0.04
SHMT2-226ENST00000556825 GFPT2O94808 682 aa15.3■□□□□ 0.04
SHMT2-226ENST00000556825 ABL1P00519 1130 aa15.3■□□□□ 0.04
SHMT2-226ENST00000556825 KRT14P02533 472 aa15.3■□□□□ 0.04
SHMT2-226ENST00000556825 HARSP12081 509 aaKnown RBP15.3■□□□□ 0.04
SHMT2-226ENST00000556825 ALOX15P16050 662 aaPredicted RBP15.3■□□□□ 0.04
SHMT2-226ENST00000556825 NECTIN1Q15223 517 aa15.3■□□□□ 0.04
SHMT2-226ENST00000556825 RBM26Q5T8P6 1007 aaKnown RBP15.3■□□□□ 0.04
SHMT2-226ENST00000556825 NAA16Q6N069 864 aaPredicted RBP15.3■□□□□ 0.04
SHMT2-226ENST00000556825 SAMD3Q8N6K7 520 aa15.3■□□□□ 0.04
SHMT2-226ENST00000556825 MLKLQ8NB16 471 aa15.3■□□□□ 0.04
SHMT2-226ENST00000556825 PPP1R14BQ96C90 147 aa15.3■□□□□ 0.04
SHMT2-226ENST00000556825 ATP6V1G3Q96LB4 118 aa15.3■□□□□ 0.04
SHMT2-226ENST00000556825 SEC62Q99442 399 aaKnown RBP15.3■□□□□ 0.04
SHMT2-226ENST00000556825 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.3■□□□□ 0.047e-8■■□□□ 13.7
SHMT2-226ENST00000556825 TUBE1Q9UJT0 475 aa15.3■□□□□ 0.04
SHMT2-226ENST00000556825 PSMD14O00487 310 aa15.29■□□□□ 0.04
SHMT2-226ENST00000556825 JAK2O60674 1132 aa15.29■□□□□ 0.04
SHMT2-226ENST00000556825 PFDN1O60925 122 aa15.29■□□□□ 0.04
SHMT2-226ENST00000556825 PTH1RQ03431 593 aa15.29■□□□□ 0.04
SHMT2-226ENST00000556825 RNF220Q5VTB9 566 aa15.29■□□□□ 0.04
SHMT2-226ENST00000556825 PAPD7Q5XG87 772 aaKnown RBP15.29■□□□□ 0.04
SHMT2-226ENST00000556825 NCCRP1Q6ZVX7 275 aaPredicted RBP15.29■□□□□ 0.04
SHMT2-226ENST00000556825 MYOCDQ8IZQ8 938 aa15.29■□□□□ 0.04
SHMT2-226ENST00000556825 IQCKQ8N0W5 287 aa15.29■□□□□ 0.04
SHMT2-226ENST00000556825 SPICE1Q8N0Z3 855 aa15.29■□□□□ 0.04
SHMT2-226ENST00000556825 LINS1Q8NG48 757 aa15.29■□□□□ 0.04
SHMT2-226ENST00000556825 DDX54Q8TDD1 881 aaKnown RBP15.29■□□□□ 0.04
SHMT2-226ENST00000556825 VCXQ9H320 206 aa15.29■□□□□ 0.04
SHMT2-226ENST00000556825 VCX3BQ9H321 246 aa15.29■□□□□ 0.04
SHMT2-226ENST00000556825 VCX3AQ9NNX9 186 aa15.29■□□□□ 0.04
SHMT2-226ENST00000556825 RIMS2Q9UQ26 1411 aa15.29■□□□□ 0.04
SHMT2-226ENST00000556825 SLC27A2O14975 620 aa15.29■□□□□ 0.04
SHMT2-226ENST00000556825 KIF5AQ12840 1032 aa15.29■□□□□ 0.04
SHMT2-226ENST00000556825 TRIM68Q6AZZ1 485 aa15.29■□□□□ 0.04
SHMT2-226ENST00000556825 IQCEQ6IPM2 695 aa15.29■□□□□ 0.04
SHMT2-226ENST00000556825 TMEM154Q6P9G4 183 aa15.29■□□□□ 0.04
SHMT2-226ENST00000556825 KLHDC4Q8TBB5 520 aa15.29■□□□□ 0.04
SHMT2-226ENST00000556825 POLR3CQ9BUI4 534 aaPredicted RBP15.29■□□□□ 0.04
SHMT2-226ENST00000556825 OXCT2Q9BYC2 517 aaPredicted RBP15.29■□□□□ 0.04
SHMT2-226ENST00000556825 GPCPD1Q9NPB8 672 aa15.29■□□□□ 0.04
SHMT2-226ENST00000556825 ZNHIT6Q9NWK9 470 aaKnown RBP15.29■□□□□ 0.04
SHMT2-226ENST00000556825 ZNF233A6NK53 670 aa15.28■□□□□ 0.04
SHMT2-226ENST00000556825 USO1O60763 962 aaKnown RBP15.28■□□□□ 0.04
SHMT2-226ENST00000556825 NLRP5P59047 1200 aa15.28■□□□□ 0.04
SHMT2-226ENST00000556825 OLFM4Q6UX06 510 aa15.28■□□□□ 0.04
SHMT2-226ENST00000556825 SAPCD2Q86UD0 394 aa15.28■□□□□ 0.04
SHMT2-226ENST00000556825 WHAMMQ8TF30 809 aa15.28■□□□□ 0.04
SHMT2-226ENST00000556825 MPHOSPH6Q99547 160 aaKnown RBP15.28■□□□□ 0.04
SHMT2-226ENST00000556825 ARHGEF10LQ9HCE6 1279 aa15.28■□□□□ 0.04
SHMT2-226ENST00000556825 KRT38O76015 456 aa15.28■□□□□ 0.04
SHMT2-226ENST00000556825 IDO1P14902 403 aa15.28■□□□□ 0.04
SHMT2-226ENST00000556825 NQO1P15559 274 aaKnown RBP15.28■□□□□ 0.04
SHMT2-226ENST00000556825 CFAP58Q5T655 872 aa15.28■□□□□ 0.04
SHMT2-226ENST00000556825 OR52E8Q6IFG1 317 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms